comparison gene_family_classifier.xml @ 5:fd170580a6c9 draft

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4:79adf9087193

    --hmmscan_log '$output_hmmscan_log'
#end if
    ]]></command>
    <inputs>
        <param name="input" format="fasta" type="data" label="Proteins fasta file"/>
        <param name="scaffold" type="select" label="Gene family scaffold">
            <options from_data_table="plant_tribes_scaffolds" />
            <validator type="no_options" message="No PlantTribes scaffolds are available.  Use the PlantTribes Scaffolds Download Data Manager tool in Galaxy to install and populate the PlantTribes scaffolds data table."/>
        </param>
        <param name="method" type="select" label="Protein clustering method">
            <option value="gfam" selected="true">GFam</option>
            <option value="orthofinder">OrthoFinder</option>
            <option value="orthomcl">OrthoMCL</option>
        </param>

5:fd170580a6c9

    --hmmscan_log '$output_hmmscan_log'
#end if
    ]]></command>
    <inputs>
        <param name="input" format="fasta" type="data" label="Proteins fasta file"/>
        <expand macro="param_scaffold" />
        <param name="method" type="select" label="Protein clustering method">
            <option value="gfam" selected="true">GFam</option>
            <option value="orthofinder">OrthoFinder</option>
            <option value="orthomcl">OrthoMCL</option>
        </param>