comparison gene_family_integrator.xml @ 4:8ef8997aaa0c draft

Uploaded

3:276f0f31ddb0

#end for
GeneFamilyIntegrator
--orthogroup_fasta '$input_dir'
--scaffold '$scaffold.fields.path'
--method $method
&>proc.log
    ]]></command>
    <inputs>
        <param name="input" format="fasta" type="data_collection" collection_type="list" label="Classified orthogroup fasta files" />
        <expand macro="param_scaffold" />
        <expand macro="param_method" />

4:8ef8997aaa0c

#end for
GeneFamilyIntegrator
--orthogroup_fasta '$input_dir'
--scaffold '$scaffold.fields.path'
--method $method
&>gene_family_integrator_log.txt;
if [[ $? -ne 0 ]]; then
    cp gene_family_integrator_log.txt integratedGeneFamilies_dir;
    exit 1;
fi
    ]]></command>
    <inputs>
        <param name="input" format="fasta" type="data_collection" collection_type="list" label="Classified orthogroup fasta files" />
        <expand macro="param_scaffold" />
        <expand macro="param_method" />