Mercurial > repos > greg > plant_tribes_gene_family_phylogeny_builder
comparison gene_family_phylogeny_builder.xml @ 7:c088c185f63f draft
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author | greg |
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date | Thu, 21 Dec 2017 09:16:25 -0500 |
parents | a7867769a706 |
children | 994e90ae9217 |
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6:a7867769a706 | 7:c088c185f63f |
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40 --bootstrap_replicates $bootstrap_replicates | 40 --bootstrap_replicates $bootstrap_replicates |
41 #end if | 41 #end if |
42 --min_orthogroup_size $min_orthogroup_size | 42 --min_orthogroup_size $min_orthogroup_size |
43 --max_orthogroup_size $max_orthogroup_size | 43 --max_orthogroup_size $max_orthogroup_size |
44 --num_threads \${GALAXY_SLOTS:-4} | 44 --num_threads \${GALAXY_SLOTS:-4} |
45 &>proc.log | 45 &>gene_family_phylogeny_builder_log.txt; |
46 if [[ $? -ne 0 ]]; then | |
47 find geneFamilyPhylogenies_dir -type d -maxdepth 1 -exec cp gene_family_phylogeny_builder_log.txt {} \; | |
48 exit 1; | |
49 fi | |
46 ]]></command> | 50 ]]></command> |
47 <inputs> | 51 <inputs> |
48 <param name="input" format="fasta" type="data_collection" collection_type="list" label="Proteins orthogroup alignments" /> | 52 <param name="input" format="fasta" type="data_collection" collection_type="list" label="Proteins orthogroup alignments" /> |
49 <conditional name="tree_inference_cond"> | 53 <conditional name="tree_inference_cond"> |
50 <param name="tree_inference" type="select" label="Phylogenetic inference method"> | 54 <param name="tree_inference" type="select" label="Phylogenetic inference method"> |