Mercurial > repos > greg > plant_tribes_gene_family_phylogeny_builder
comparison gene_family_phylogeny_builder.xml @ 12:13d2d138e0e2 draft default tip
"planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/phylogenetics/plant_tribes/gene_family_phylogeny_builder commit f1998b1af463af68d71cb4697fc4e1fa471cdd5a"
| author | greg |
|---|---|
| date | Tue, 20 Jul 2021 20:29:00 +0000 |
| parents | 800402ed6eb7 |
| children |
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| 11:800402ed6eb7 | 12:13d2d138e0e2 |
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| 1 <tool id="plant_tribes_gene_family_phylogeny_builder" name="GeneFamilyPhylogenyBuilder" version="@WRAPPER_VERSION@.3.1" profile="18.09"> | 1 <tool id="plant_tribes_gene_family_phylogeny_builder" name="GeneFamilyPhylogenyBuilder" version="@WRAPPER_VERSION@.4.1" profile="18.09"> |
| 2 <description>builds phylogenetic trees of aligned orthologous gene family clusters</description> | 2 <description>builds phylogenetic trees of aligned orthologous gene family clusters</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <requirements> | 6 <requirements> |
| 7 <requirement type="package" version="1.0.3">plant_tribes_gene_family_phylogeny_builder</requirement> | 7 <requirement type="package" version="1.0.4">plant_tribes_gene_family_phylogeny_builder</requirement> |
| 8 </requirements> | 8 </requirements> |
| 9 <code file="get_clustering_methods.py"/> | 9 <code file="get_clustering_methods.py"/> |
| 10 <command detect_errors="exit_code"><![CDATA[ | 10 <command detect_errors="exit_code"><![CDATA[ |
| 11 #set input_dir = 'input_dir' | 11 #set input_dir = 'input_dir' |
| 12 #set tree_inference = $tree_inference_cond.tree_inference | 12 #set tree_inference = $tree_inference_cond.tree_inference |
| 92 <element name="3722.faa.aln" value="3722.faa.aln"/> | 92 <element name="3722.faa.aln" value="3722.faa.aln"/> |
| 93 </collection> | 93 </collection> |
| 94 </param> | 94 </param> |
| 95 <param name="tree_inference" value="fasttree"/> | 95 <param name="tree_inference" value="fasttree"/> |
| 96 <output_collection name="tree" type="list"> | 96 <output_collection name="tree" type="list"> |
| 97 <element name="3722.faa.aln.tree" file="3722.faa.aln.tree" ftype="newick"/> | 97 <element name="3722.faa.aln.tree" file="3722.faa.aln.tree" ftype="newick" compare="contains"/> |
| 98 </output_collection> | 98 </output_collection> |
| 99 </test> | 99 </test> |
| 100 </tests> | 100 </tests> |
| 101 <help> | 101 <help> |
| 102 This tool is one of the PlantTribes collection of automated modular analysis pipelines for comparative and evolutionary | 102 This tool is one of the PlantTribes collection of automated modular analysis pipelines for comparative and evolutionary |