Mercurial > repos > greg > plant_tribes_gene_family_phylogeny_builder
changeset 8:994e90ae9217 draft
Uploaded
author | greg |
---|---|
date | Wed, 06 Jun 2018 09:24:38 -0400 (2018-06-06) |
parents | c088c185f63f |
children | ea8cbe5a8cd0 |
files | gene_family_phylogeny_builder.xml |
diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/gene_family_phylogeny_builder.xml Thu Dec 21 09:16:25 2017 -0500 +++ b/gene_family_phylogeny_builder.xml Wed Jun 06 09:24:38 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="plant_tribes_gene_family_phylogeny_builder" name="GeneFamilyPhylogenyBuilder" version="@WRAPPER_VERSION@.3.0"> +<tool id="plant_tribes_gene_family_phylogeny_builder" name="GeneFamilyPhylogenyBuilder" version="@WRAPPER_VERSION@.3.1"> <description>builds phylogenetic trees of aligned orthologous gene family clusters</description> <macros> <import>macros.xml</import> @@ -77,7 +77,7 @@ </inputs> <outputs> <collection name="tree" type="list" label="${tool.name} (phylogenetic trees) on ${on_string}"> - <discover_datasets pattern="__name__" directory="geneFamilyPhylogenies_dir/orthogroups_tree" format="nhx" /> + <discover_datasets pattern="__name__" directory="geneFamilyPhylogenies_dir/orthogroups_tree" format="newick" /> </collection> <collection name="phylip" type="list" label="${tool.name} (orthogroup phylip multiple sequence alignments) on ${on_string}"> <filter>tree_inference_cond['tree_inference'] == 'raxml'</filter> @@ -93,7 +93,7 @@ </param> <param name="tree_inference" value="fasttree"/> <output_collection name="tree" type="list"> - <element name="3722.faa.aln.tree" file="3722.faa.aln.tree" ftype="nhx"/> + <element name="3722.faa.aln.tree" file="3722.faa.aln.tree" ftype="newick"/> </output_collection> </test> </tests>