# HG changeset patch
# User greg
# Date 1538415416 14400
# Node ID cb101ec1a0dd81daf7f65437c99a7cc6d50e449a
# Parent  794951c24c864d67e3589104aed5892779d578a3
Uploaded

diff -r 794951c24c86 -r cb101ec1a0dd gene_family_scaffold_loader.py
--- a/gene_family_scaffold_loader.py	Mon Oct 01 13:36:28 2018 -0400
+++ b/gene_family_scaffold_loader.py	Mon Oct 01 13:36:56 2018 -0400
@@ -105,7 +105,7 @@
         """
         scaffold_id = os.path.basename(self.args.scaffold_path)
         file_dir = os.path.join(self.args.scaffold_path, 'annot')
-        # The scaffol naming convention must follow this pattern:
+        # The scaffold naming convention must follow this pattern:
         # <integer1>Gv<integer2>.<integer3>
         # where integer 1 is the number of genomes in the scaffold_id.  For example:
         # 22Gv1.1 -> 22 genomes
@@ -137,6 +137,7 @@
                     if i2 == 0:
                         # Skip first line.
                         continue
+                    line = line.rstrip('\n')
                     num_genes = 0
                     num_species = 0
                     items = line.split("\t")