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comparison test-data/test2_report.tab @ 0:5367786dc871 draft default tip

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author greg
date Tue, 14 Mar 2023 15:21:14 +0000
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-1:000000000000 0:5367786dc871
1 Assembly contig1 contig2
2 # contigs (>= 0 bp) 3 1
3 # contigs (>= 1000 bp) 3 1
4 Total length (>= 0 bp) 6710 6650
5 Total length (>= 1000 bp) 6710 6650
6 # contigs 3 1
7 Largest contig 3980 6650
8 Total length 6710 6650
9 Reference length 6650 6650
10 GC (%) 51.28 52.00
11 Reference GC (%) 52.00 52.00
12 N50 3980 6650
13 NG50 3980 6650
14 N90 1120 6650
15 NG90 1120 6650
16 auN 2934.0 6650.0
17 auNG 2960.4 6650.0
18 L50 1 1
19 LG50 1 1
20 L90 3 1
21 LG90 3 1
22 # misassemblies 0 0
23 # misassembled contigs 0 0
24 Misassembled contigs length 0 0
25 # local misassemblies 0 0
26 # scaffold gap ext. mis. 0 0
27 # scaffold gap loc. mis. 0 0
28 # unaligned mis. contigs 0 0
29 # unaligned contigs 0 + 1 part 0 + 0 part
30 Unaligned length 1950 0
31 Genome fraction (%) 71.579 100.000
32 Duplication ratio 1.000 1.000
33 # N's per 100 kbp 0.00 0.00
34 # mismatches per 100 kbp 0.00 0.00
35 # indels per 100 kbp 0.00 0.00
36 # genomic features 7 + 7 part 13 + 1 part
37 Largest alignment 2030 6650
38 Total aligned length 4760 6650
39 NA50 1610 6650
40 NGA50 1610 6650
41 NA90 - 6650
42 NGA90 - 6650
43 auNA 1187.4 6650.0
44 auNGA 1198.1 6650.0
45 LA50 2 1
46 LGA50 2 1
47 LA90 - 1
48 LGA90 - 1
49 K-mer-based compl. (%) 68.09 100.00
50 K-mer-based cor. length (%) 100.00 100.00
51 K-mer-based mis. length (%) 0.00 0.00
52 # k-mer-based misjoins 0 0