Mercurial > repos > greg > quast
comparison test-data/test2_report.tab @ 0:5367786dc871 draft default tip
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author | greg |
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date | Tue, 14 Mar 2023 15:21:14 +0000 |
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-1:000000000000 | 0:5367786dc871 |
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1 Assembly contig1 contig2 | |
2 # contigs (>= 0 bp) 3 1 | |
3 # contigs (>= 1000 bp) 3 1 | |
4 Total length (>= 0 bp) 6710 6650 | |
5 Total length (>= 1000 bp) 6710 6650 | |
6 # contigs 3 1 | |
7 Largest contig 3980 6650 | |
8 Total length 6710 6650 | |
9 Reference length 6650 6650 | |
10 GC (%) 51.28 52.00 | |
11 Reference GC (%) 52.00 52.00 | |
12 N50 3980 6650 | |
13 NG50 3980 6650 | |
14 N90 1120 6650 | |
15 NG90 1120 6650 | |
16 auN 2934.0 6650.0 | |
17 auNG 2960.4 6650.0 | |
18 L50 1 1 | |
19 LG50 1 1 | |
20 L90 3 1 | |
21 LG90 3 1 | |
22 # misassemblies 0 0 | |
23 # misassembled contigs 0 0 | |
24 Misassembled contigs length 0 0 | |
25 # local misassemblies 0 0 | |
26 # scaffold gap ext. mis. 0 0 | |
27 # scaffold gap loc. mis. 0 0 | |
28 # unaligned mis. contigs 0 0 | |
29 # unaligned contigs 0 + 1 part 0 + 0 part | |
30 Unaligned length 1950 0 | |
31 Genome fraction (%) 71.579 100.000 | |
32 Duplication ratio 1.000 1.000 | |
33 # N's per 100 kbp 0.00 0.00 | |
34 # mismatches per 100 kbp 0.00 0.00 | |
35 # indels per 100 kbp 0.00 0.00 | |
36 # genomic features 7 + 7 part 13 + 1 part | |
37 Largest alignment 2030 6650 | |
38 Total aligned length 4760 6650 | |
39 NA50 1610 6650 | |
40 NGA50 1610 6650 | |
41 NA90 - 6650 | |
42 NGA90 - 6650 | |
43 auNA 1187.4 6650.0 | |
44 auNGA 1198.1 6650.0 | |
45 LA50 2 1 | |
46 LGA50 2 1 | |
47 LA90 - 1 | |
48 LGA90 - 1 | |
49 K-mer-based compl. (%) 68.09 100.00 | |
50 K-mer-based cor. length (%) 100.00 100.00 | |
51 K-mer-based mis. length (%) 0.00 0.00 | |
52 # k-mer-based misjoins 0 0 |