diff macros.xml @ 0:5367786dc871 draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Tue Mar 14 15:21:14 2023 +0000
@@ -0,0 +1,32 @@
+<macros>
+    <token name="@TOOL_VERSION@">5.2.0</token>
+    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@PROFILE@">21.01</token>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">quast</requirement>
+            <requirement type="package" version="0.7.17">bwa</requirement>
+            <requirement type="package" version="2.30.0">bedtools</requirement>
+        </requirements>
+    </xml>
+    <xml name="bio_tools">
+        <xrefs>
+            <xref type="bio.tools">quast</xref>
+        </xrefs>
+    </xml>
+    <xml name="gene_thresholds">
+        <param name="gene_thresholds" argument="--gene-thresholds" type="text" value="0,300,1500,3000" label="Comma-separated list of thresholds (in bp) for gene lengths to find with a finding tool"/>
+    </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.1093/bioinformatics/bty266</citation>
+            <citation type="doi">10.1093/bioinformatics/btw379</citation>
+            <citation type="doi">10.1093/bioinformatics/btv697</citation>
+            <citation type="doi">10.1093/bioinformatics/btt086</citation>
+        </citations>
+    </xml>
+    <xml name="min_identity_macros" token_value="">
+        <param argument="--min-identity" type="float" value="@VALUE@" min="80" max="100" label="Minimum IDY% considered as proper alignment" help="Alignments with IDY% worse than this value will be filtered. Note that all alignments
+            with IDY% less than 80.0% will be filtered regardless of this threshold. "/>
+    </xml>
+</macros>