Mercurial > repos > greg > queue_genotype_workflow

comparison queue_genotype_workflow.xml @ 5:934acc64b30c draft

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author greg
date Tue, 26 Nov 2019 08:46:09 -0500
parents 36f8098ff528
children b7212fe2d597
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4:163ecfba5961 5:934acc64b30c
50 </test> 50 </test>
51 </tests> 51 </tests>
52 <help> 52 <help>
53 **What it does** 53 **What it does**
54 54
55 Uses the Galaxy/Bioblend API to execute the complete multilocus genotype analysis pipeline for corals or symbiants. 55 Uses the Galaxy/Bioblend API to execute the complete multilocus genotype analysis pipeline for corals or symbionts.
56 This tool must be able to access the corals (stag) database. 56 This tool must be able to access the corals (stag) database.
57 57
58 **Required options** 58 **Required options**
59 59
60 * **Affymetrix 96 well plate metadata file** - a tabular file created by the user to describe their samples - it can be exported from Excel using this example as a template: http://baumslab.org/documents/SNPChip/STAG_Metadata_Template_v3.xlsm 60 * **Affymetrix 96 well plate metadata file** - a tabular file created by the user to describe their samples - it can be exported from Excel using this example as a template: http://baumslab.org/documents/SNPChip/STAG_Metadata_Template_v3.xlsm