# HG changeset patch
# User greg
# Date 1574094449 18000
# Node ID 36f8098ff52844c650a930b869e7be05f407daea
# Parent  fa50d7c895c2b4c9b63e99372d5f9c904fb62951
Uploaded

diff -r fa50d7c895c2 -r 36f8098ff528 queue_genotype_workflow.xml
--- a/queue_genotype_workflow.xml	Mon Sep 16 14:01:09 2019 -0400
+++ b/queue_genotype_workflow.xml	Mon Nov 18 11:27:29 2019 -0500
@@ -55,6 +55,18 @@
 Uses the Galaxy/Bioblend API to execute the complete multilocus genotype analysis pipeline for corals or symbiants.
 This tool must be able to access the corals (stag) database.
 
+**Required options**
+
+ * **Affymetrix 96 well plate metadata file** - a tabular file created by the user to describe their samples - it can be exported from Excel using this example as a template: http://baumslab.org/documents/SNPChip/STAG_Metadata_Template_v3.xlsm
+ * **Sample attributes file** - the Sample Attributes tabular file created by the Affymetrix sequencer for the plate
+ * **Probeset annotation file** - the annotation CSV file created by the Affymetrix sequencer for the plate
+ * **Apt-probeset genotype summary file** - the summary CSV file created by the Affymetrix sequencer for the plate
+ * **Apt-probeset genotype snp-posteriors file** - the snp-posteriors CSV file created by the Affymetrix sequencer for the plate
+ * **Apt-probeset genotype report file** - the report CSV file created by the Affymetrix sequencer for the plate
+ * **Apt-probeset genotype confidences file** - the confidences CSV file created by the Affymetrix sequencer for the plate
+ * **Apt-probeset genotype calls file** - the calls CSV file created by the Affymetrix sequencer for the plate
+ * **Fasta reference sequence** - selected fasta reference dataset for the samples
+
     </help>
     <citations>
         <citation type="bibtex">