comparison validate_affy_metadata.py @ 3:7f95329251f0 draft

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2:72e79ed7ca41

    elif len(email) > EMAIL_MAX_LEN:
        return add_error_msg(accumulated_msgs, "Line %d contains an email address (%) that is longer than the maximum length, %d characters." % (line_no, email))
    return accumulated_msgs


def validate_integer(line_no, integer_string, column, accumulated_msgs):
    try:
        integer_string.isdigit()
        return accumulated_msgs
    except Exception:
        return add_error_msg(accumulated_msgs, "Line %d contains an incorrect integer value (%s) for column %s." % (line_no, integer_string, column))


accumulated_msgs = ""
# Parse the input file, skipping the header, and validating
# that each data line consists of 31 comma-separated items.
with open(args.input, "r") as ih:
    for i, line in enumerate(ih):

        # Optional.
        geographic_origin = items[8]
        # Optional.
        colony_location = items[9]
        depth = items[10]
        # If depth has a value, then it must be integer.
        if len(depth) > 0:
            accumulated_msgs = validate_integer(line_no, depth, "depth", accumulated_msgs)
        # Optional.
        disease_resist = items[11]
        # Optional.
        bleach_resist = items[12]
        # Optional.

3:7f95329251f0

    elif len(email) > EMAIL_MAX_LEN:
        return add_error_msg(accumulated_msgs, "Line %d contains an email address (%) that is longer than the maximum length, %d characters." % (line_no, email))
    return accumulated_msgs


accumulated_msgs = ""
# Parse the input file, skipping the header, and validating
# that each data line consists of 31 comma-separated items.
with open(args.input, "r") as ih:
    for i, line in enumerate(ih):

        # Optional.
        geographic_origin = items[8]
        # Optional.
        colony_location = items[9]
        depth = items[10]
        # If depth has a value, then it must be a decimal.
        if len(depth) > 0:
            accumulated_msgs = validate_decimal(line_no, depth, "depth", accumulated_msgs)
        # Optional.
        disease_resist = items[11]
        # Optional.
        bleach_resist = items[12]
        # Optional.