Mercurial > repos > greg > validate_affy_metadata
changeset 1:b5f5c3d0f349 draft
Uploaded
| author | greg |
|---|---|
| date | Fri, 13 Sep 2019 13:55:24 -0400 |
| parents | 80d672b3e6dd |
| children | 72e79ed7ca41 |
| files | validate_affy_metadata.py validate_affy_metadata.xml |
| diffstat | 2 files changed, 2 insertions(+), 5 deletions(-) [+] |
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--- a/validate_affy_metadata.py Thu Aug 15 13:17:41 2019 -0400 +++ b/validate_affy_metadata.py Fri Sep 13 13:55:24 2019 -0400 @@ -74,9 +74,6 @@ # Keep 1-based line value for error messages. line_no = i + 1 line = line.rstrip("\r\n") - if i > 97: - accumulated_msgs = add_error_msg(accumulated_msgs, "The input file contains more than 97 lines (must be 1 header line and no more than 96 data lines).") - stop_error(accumulated_msgs) items = line.split("\t") if len(items) != 32: accumulated_msgs = add_error_msg(accumulated_msgs, "Line %d contains %s columns, (must be 32)." % (line_no, len(items)))
--- a/validate_affy_metadata.xml Thu Aug 15 13:17:41 2019 -0400 +++ b/validate_affy_metadata.xml Fri Sep 13 13:55:24 2019 -0400 @@ -6,7 +6,7 @@ --output '$output']]></command> <inputs> <param name="input" type="data" format="tabular" label="Affymetrix 96 well plate metadata file"> - <validator type="expression" message="96 well plate data must have 32 columns and no more than 96 lines of data"><![CDATA[value is not None and value.metadata.columns==32 and value.metadata.data_lines<=96]]></validator> + <validator type="expression" message="96 well plate data must have 32 columns"><![CDATA[value is not None and value.metadata.columns==32]]></validator> </param> </inputs> <outputs> @@ -21,7 +21,7 @@ <help> **What it does** -Validates an Affymetrix metadata file for 96 well plate data. These files consist of 32 columns and no more than 96 data lines. +Validates an Affymetrix metadata file for 96 well plate data consisting of 32 columns. The tool will output the input file if it is valid. -----