view validate_temperature_data.xml @ 0:26415eac98c3 draft default tip

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<tool id="validate_temperature_data" name="Validate temperature data" version="1.0.0">
    <description>for insect phenology model</description>
    <command detect_errors="exit_code"><![CDATA[
#set temperature_data_type = $temperature_data_type_cond.temperature_data_type
python '$__tool_directory__/validate_temperature_data.py'
--data_type $temperature_data_type
#if str($temperature_data_type) == "normals":
    --input_normals '$temperature_data_type_cond.input_normals'
#else:
    --input_actuals '$temperature_data_type_cond.input_actuals'
#end if
--output '$output']]></command>
    <inputs>
        <conditional name="temperature_data_type_cond">
            <param name="temperature_data_type" type="select" label="Validate 30 year normals or daily actuals temperature data?">
                <option value="normals" selected="true">30 year normals</option>
                <option value="actuals">daily actuals</option>
            </param>
            <when value="normals">
                <param name="input_normals" type="data" format="csv" label="30 year normals CSV file">
                    <validator type="expression" message="30 year normals temperature data must have 10 columns and 366 rows">value is not None and value.metadata.columns==10 and value.metadata.data_lines==366</validator>
                </param>
            </when>
            <when value="actuals">
                <param name="input_actuals" type="data" format="csv" label="Daily actuals CSV file">
                     <validator type="expression" message="Daily actuals temperature data must have 6 columns">value is not None and value.metadata.columns==6</validator>
                </param>
            </when>
        </conditional>
    </inputs>
    <outputs>
        <data name="output" format="csv"/>
    </outputs>
    <tests>
        <test>
            <param name="input_normals" value="30_year_normals.csv" ftype="csv"/>
            <output name="output" file="30_year_normals.csv" ftype="csv"/>
        </test>
        <test>
            <param name="temperature_data_type" value="actuals"/>
            <param name="input_actuals" value="daily_actuals.csv" ftype="csv"/>
            <output name="output" file="daily_actuals.csv" ftype="csv"/>
        </test>
    </tests>
    <help>
**What it does**

Validates either a 30 year normals temeprature dataset or a daily actuals temperature dataset which are used
as input to the insect phenology model tool.  The tool will output the input file if it is valid.

-----

**30 year normals columns**

 * stationid
 * latitude
 * longitude
 * elev_m
 * name
 * st
 * mmdd
 * doy
 * tmin
 * tmax

**Daily actuals columns**

 * LATITUDE
 * LONGITUDE
 * DATE
 * DOY
 * TMIN
 * TMAX
    </help>
    <citations>
    </citations>
</tool>