Mercurial > repos > greg > vsnp_add_zero_coverage
diff vsnp_add_zero_coverage.xml @ 12:4f68ac34612d draft
"planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_add_zero_coverage commit 12290f30f18c10e0e74994b39bdee35ee3d6a726"
author | greg |
---|---|
date | Mon, 15 Nov 2021 21:36:44 +0000 |
parents | fdfcdc9548ec |
children |
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--- a/vsnp_add_zero_coverage.xml Fri Nov 12 16:09:39 2021 +0000 +++ b/vsnp_add_zero_coverage.xml Mon Nov 15 21:36:44 2021 +0000 @@ -58,15 +58,31 @@ <param name="vcf_input" value="vcf_input.vcf" ftype="vcf" dbkey="89"/> <param name="reference_source" value="history"/> <param name="reference" value="NC_002945v4.fasta" ftype="fasta"/> - <output name="output_vcf" value="output_vcf.vcf" ftype="vcf" compare="contains"/> - <output name="output_metrics" file="output_metrics.tabular" ftype="tabular"/> + <output name="output_vcf" ftype="vcf"> + <assert_contents> + <has_size value="259726"/> + </assert_contents> + </output> + <output name="output_metrics" ftype="tabular"> + <assert_contents> + <has_size value="109"/> + </assert_contents> + </output> </test> <test expect_num_outputs="2"> <param name="bam_input" value="bam_input.bam" ftype="bam" dbkey="89"/> <param name="vcf_input" value="vcf_input.vcf" ftype="vcf" dbkey="89"/> <param name="reference_source" value="cached"/> - <output name="output_vcf" value="output_vcf.vcf" ftype="vcf" compare="contains"/> - <output name="output_metrics" file="output_metrics.tabular" ftype="tabular" compare="contains"/> + <output name="output_vcf" ftype="vcf"> + <assert_contents> + <has_size value="259726"/> + </assert_contents> + </output> + <output name="output_metrics" ftype="tabular"> + <assert_contents> + <has_size value="109"/> + </assert_contents> + </output> </test> </tests> <help>