# HG changeset patch # User greg # Date 1627916849 0 # Node ID 127a00fcd4a83c3d083a46fe2f76d00353b6260a # Parent bb6cc994707db37ff657bbd73e22f4e304763641 Uploaded diff -r bb6cc994707d -r 127a00fcd4a8 macros.xml --- a/macros.xml Thu Jul 22 17:53:31 2021 +0000 +++ b/macros.xml Mon Aug 02 15:07:29 2021 +0000 @@ -1,7 +1,31 @@ <?xml version='1.0' encoding='UTF-8'?> <macros> <token name="@WRAPPER_VERSION@">1.0</token> - <token name="@PROFILE@">19.09</token> + <token name="@PROFILE@">20.09</token> + <xml name="biopython_requirement"> + <requirement type="package" version="1.79">biopython</requirement> + </xml> + <xml name="numpy_requirement"> + <requirement type="package" version="1.21.1">numpy</requirement> + </xml> + <xml name="openpyxl_requirement"> + <requirement type="package" version="3.0.7">openpyxl</requirement> + </xml> + <xml name="pandas_requirement"> + <requirement type="package" version="1.3.0">pandas</requirement> + </xml> + <xml name="pysam_requirement"> + <requirement type="package" version="0.15.4">pysam</requirement> + </xml> + <xml name="pyyaml_requirement"> + <requirement type="package" version="5.3">pyyaml</requirement> + </xml> + <xml name="xlrd_requirement"> + <requirement type="package" version="2.0.1">xlrd</requirement> + </xml> + <xml name="xlsxwriter_requirement"> + <requirement type="package" version="1.4.4">xlsxwriter</requirement> + </xml> <xml name="param_reference_source"> <param name="reference_source" type="select" label="Choose the source for the reference genome"> <option value="cached" selected="true">locally cached</option> diff -r bb6cc994707d -r 127a00fcd4a8 vsnp_add_zero_coverage.xml --- a/vsnp_add_zero_coverage.xml Thu Jul 22 17:53:31 2021 +0000 +++ b/vsnp_add_zero_coverage.xml Mon Aug 02 15:07:29 2021 +0000 @@ -4,9 +4,9 @@ <import>macros.xml</import> </macros> <requirements> - <requirement type="package" version="3.0.7">openpyxl</requirement> - <requirement type="package" version="1.79">biopython</requirement> - <requirement type="package" version="1.3.0">pandas</requirement> + <expand macro="biopython_requirement"/> + <expand macro="openpyxl_requirement"/> + <expand macro="pandas_requirement"/> <requirement type="package" version="0.16.0.1">pysam</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ @@ -85,6 +85,6 @@ * **Choose the source for the reference genome** - select "locally cached" if the reference associated with the BAM and VCF files is available within the Galaxy environment or "from history" to select the reference from the current history. </help> - <expand macro="citations" /> + <expand macro="citations"/> </tool>