Mercurial > repos > greg > vsnp_build_tables

changeset 4:b67a6326a96b draft

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"planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_build_tables commit 23762af1ec5da6c6f7407f6194d7a2bf9d242618"
author greg
date Wed, 16 Jun 2021 15:26:36 +0000
parents abfb861df879
children 2ec51816eaac
files .shed.yml static/images/._table_description.png vsnp_build_tables.xml
diffstat 3 files changed, 7 insertions(+), 18 deletions(-) [+]
line wrap: on
line diff
--- a/.shed.yml	Sun Jan 03 16:21:29 2021 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,11 +0,0 @@
-name: vsnp_build_tables
-owner: greg
-description: |
-  Contains a tool that produces Excel spreadsheets from outputs produced by the vsnp_get_snps tool.
-homepage_url: https://github.com/USDA-VS/vSNP
-long_description: |
-  Contains a tool that produces Excel spreadsheets from outputs produced by the vsnp_get_snps tool.
-remote_repository_url: https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_build_tables
-type: unrestricted
-categories:
-  - Sequence Analysis
Binary file static/images/._table_description.png has changed
--- a/vsnp_build_tables.xml	Sun Jan 03 16:21:29 2021 +0000
+++ b/vsnp_build_tables.xml	Wed Jun 16 15:26:36 2021 +0000
@@ -69,7 +69,7 @@
         </conditional>
     </inputs>
     <outputs>
-        <collection name="excel" type="list" label="${tool.name} on ${on_string}">
+        <collection name="excel" type="list" format="xlsx" label="${tool.name} on ${on_string}">
             <discover_datasets pattern="(?P&lt;designation&gt;.+)\.(?P&lt;ext&gt;xlsx)" directory="output_excel_dir"/>
         </collection>
     </outputs>
@@ -90,8 +90,8 @@
             <param name="input_avg_mq_json" value="Mbovis-01_avg_mq.json" ftype="json" dbkey="89"/>
             <param name="gbk_param" value="no"/>
             <output_collection name="excel" type="list" count="2">
-                <element name="Mbovis-01_snps_cascade_table" file="Mbovis-01_cascade_table.xlsx" ftype="xlsx" compare="sim_size"/>
-                <element name="Mbovis-01_snps_sort_table" file="Mbovis-01_sort_table.xlsx" ftype="xlsx" compare="sim_size"/>
+                <element name="Mbovis-01_snps_newick_cascade_table" file="Mbovis-01_cascade_table.xlsx" ftype="xlsx" compare="sim_size"/>
+                <element name="Mbovis-01_snps_newick_sort_table" file="Mbovis-01_sort_table.xlsx" ftype="xlsx" compare="sim_size"/>
             </output_collection>
         </test>
         <test>
@@ -100,8 +100,8 @@
             <param name="input_avg_mq_json" value="Mbovis-01D_avg_mq.json" ftype="json" dbkey="89"/>
             <param name="gbk_param" value="no"/>
             <output_collection name="excel" type="list" count="2">
-                <element name="Mbovis-01D_snps_cascade_table" file="Mbovis-01D_cascade_table.xlsx" ftype="xlsx" compare="sim_size"/>
-                <element name="Mbovis-01D_sort_table" file="Mbovis-01D_sort_table.xlsx" ftype="xlsx" compare="sim_size"/>
+                <element name="Mbovis-01D_snps_newick_cascade_table" file="Mbovis-01D_cascade_table.xlsx" ftype="xlsx" compare="sim_size"/>
+                <element name="Mbovis-01D_snps_newick_sort_table" file="Mbovis-01D_sort_table.xlsx" ftype="xlsx" compare="sim_size"/>
             </output_collection>
         </test>
         <test>
@@ -110,8 +110,8 @@
             <param name="input_avg_mq_json" value="Mbovis-01D6_avg_mq.json" ftype="json" dbkey="89"/>
             <param name="gbk_param" value="no"/>
             <output_collection name="excel" type="list" count="2">
-                <element name="Mbovis-01D6_cascade_table" file="Mbovis-01D6_cascade_table.xlsx" ftype="xlsx" compare="sim_size"/>
-                <element name="Mbovis-01D6_sort_table" file="Mbovis-01D6_sort_table.xlsx" ftype="xlsx" compare="sim_size"/>
+                <element name="Mbovis-01D6_snps_newick_cascade_table" file="Mbovis-01D6_cascade_table.xlsx" ftype="xlsx" compare="sim_size"/>
+                <element name="Mbovis-01D6_snps_newick_sort_table" file="Mbovis-01D6_sort_table.xlsx" ftype="xlsx" compare="sim_size"/>
             </output_collection>
         </test>
     </tests>