Mercurial > repos > greg > vsnp_build_tables

changeset 12:c082261eecea draft

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Uploaded
author greg
date Mon, 02 Aug 2021 16:31:44 +0000
parents be32fbc45ae8
children 34757e490411
files .shed.yml macros.xml static/images/._table_description.png vsnp_build_tables.xml
diffstat 4 files changed, 38 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/.shed.yml	Mon Aug 02 16:31:44 2021 +0000
@@ -0,0 +1,11 @@
+name: vsnp_build_tables
+owner: greg
+description: |
+  Contains a tool that produces Excel spreadsheets from outputs produced by the vsnp_get_snps tool.
+homepage_url: https://github.com/USDA-VS/vSNP
+long_description: |
+  Contains a tool that produces Excel spreadsheets from outputs produced by the vsnp_get_snps tool.
+remote_repository_url: https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_build_tables
+type: unrestricted
+categories:
+  - Sequence Analysis
--- a/macros.xml	Thu Jul 29 15:11:06 2021 +0000
+++ b/macros.xml	Mon Aug 02 16:31:44 2021 +0000
@@ -1,7 +1,31 @@
 <?xml version='1.0' encoding='UTF-8'?>
 <macros>
     <token name="@WRAPPER_VERSION@">1.0</token>
-    <token name="@PROFILE@">19.09</token>
+    <token name="@PROFILE@">20.09</token>
+    <xml name="biopython_requirement">
+        <requirement type="package" version="1.79">biopython</requirement>
+    </xml>
+    <xml name="numpy_requirement">
+        <requirement type="package" version="1.21.1">numpy</requirement>
+    </xml>
+    <xml name="openpyxl_requirement">
+        <requirement type="package" version="3.0.7">openpyxl</requirement>
+    </xml>
+    <xml name="pandas_requirement">
+        <requirement type="package" version="1.3.0">pandas</requirement>
+    </xml>
+    <xml name="pysam_requirement">
+        <requirement type="package" version="0.15.4">pysam</requirement>
+    </xml>
+    <xml name="pyyaml_requirement">
+        <requirement type="package" version="5.3">pyyaml</requirement>
+    </xml>
+    <xml name="xlrd_requirement">
+        <requirement type="package" version="2.0.1">xlrd</requirement>
+    </xml>
+    <xml name="xlsxwriter_requirement">
+        <requirement type="package" version="1.4.4">xlsxwriter</requirement>
+    </xml>
     <xml name="param_reference_source">
         <param name="reference_source" type="select" label="Choose the source for the reference genome">
             <option value="cached" selected="true">locally cached</option>
Binary file static/images/._table_description.png has changed
--- a/vsnp_build_tables.xml	Thu Jul 29 15:11:06 2021 +0000
+++ b/vsnp_build_tables.xml	Mon Aug 02 16:31:44 2021 +0000
@@ -4,9 +4,9 @@
         <import>macros.xml</import>
     </macros>
     <requirements>
-        <requirement type="package" version="1.79">biopython</requirement>
+        <expand macro="biopython_requirement"/>
         <requirement type="package" version="0.25.3">pandas</requirement>
-        <requirement type="package" version="1.4.4">xlsxwriter</requirement>
+        <expand macro="xlsxwriter_requirement"/>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
 #import re