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4
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1 ##fileformat=VCFv4.2
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2 ##FILTER=<ID=LowQual,Description="Low quality">
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3 ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
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4 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
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5 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
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6 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
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7 ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
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8 ##GATKCommandLine.HaplotypeCaller=<ID=HaplotypeCaller,Version=3.8-0-ge9d806836,Date="Fri Dec 22 16:41:19 CST 2017",Epoch=1513982479531,CommandLineOptions="analysis_type=HaplotypeCaller input_file=[/scratch/analysis_staging/a_script/bovis_reanalysis_af2122_2017-12-14/2001-2008/01-1787/01-1787-quality.bam] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/scratch/analysis_staging/a_script/bovis_reanalysis_af2122_2017-12-14/2001-2008/01-1787/NC_002945v4.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=500 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null use_jdk_deflater=false use_jdk_inflater=false disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false out=/scratch/analysis_staging/a_script/bovis_reanalysis_af2122_2017-12-14/2001-2008/01-1787/01-1787-hapall.vcf likelihoodCalculationEngine=PairHMM heterogeneousKmerSizeResolution=COMBO_MIN dbsnp=(RodBinding name= source=UNBOUND) dontTrimActiveRegions=false maxDiscARExtension=25 maxGGAARExtension=300 paddingAroundIndels=150 paddingAroundSNPs=20 comp=[] annotation=[] excludeAnnotation=[] group=[StandardAnnotation, StandardHCAnnotation] debug=false useFilteredReadsForAnnotations=false emitRefConfidence=NONE bamWriterType=CALLED_HAPLOTYPES emitDroppedReads=false disableOptimizations=false annotateNDA=false useNewAFCalculator=false heterozygosity=0.001 indel_heterozygosity=1.25E-4 heterozygosity_stdev=0.01 standard_min_confidence_threshold_for_calling=10.0 standard_min_confidence_threshold_for_emitting=30.0 max_alternate_alleles=6 max_genotype_count=1024 max_num_PL_values=100 input_prior=[] sample_ploidy=2 genotyping_mode=DISCOVERY alleles=(RodBinding name= source=UNBOUND) contamination_fraction_to_filter=0.0 contamination_fraction_per_sample_file=null p_nonref_model=null exactcallslog=null output_mode=EMIT_VARIANTS_ONLY allSitePLs=false gcpHMM=10 pair_hmm_implementation=FASTEST_AVAILABLE phredScaledGlobalReadMismappingRate=45 noFpga=false nativePairHmmThreads=1 useDoublePrecision=false sample_name=null kmerSize=[10, 25] dontIncreaseKmerSizesForCycles=false allowNonUniqueKmersInRef=true numPruningSamples=1 recoverDanglingHeads=false doNotRecoverDanglingBranches=false minDanglingBranchLength=4 consensus=false maxNumHaplotypesInPopulation=128 errorCorrectKmers=false minPruning=2 debugGraphTransformations=false allowCyclesInKmerGraphToGeneratePaths=false graphOutput=null kmerLengthForReadErrorCorrection=25 minObservationsForKmerToBeSolid=20 GVCFGQBands=[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 70, 80, 90, 99] indelSizeToEliminateInRefModel=10 min_base_quality_score=10 includeUmappedReads=false useAllelesTrigger=false doNotRunPhysicalPhasing=true keepRG=null justDetermineActiveRegions=false dontGenotype=false dontUseSoftClippedBases=true captureAssemblyFailureBAM=false errorCorrectReads=false pcr_indel_model=CONSERVATIVE maxReadsInRegionPerSample=10000 minReadsPerAlignmentStart=10 mergeVariantsViaLD=false activityProfileOut=null activeRegionOut=null activeRegionIn=null activeRegionExtension=null forceActive=false activeRegionMaxSize=null bandPassSigma=null maxReadsInMemoryPerSample=30000 maxTotalReadsInMemory=10000000 maxProbPropagationDistance=50 activeProbabilityThreshold=0.002 min_mapping_quality_score=20 filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
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9 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
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10 ##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
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11 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
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12 ##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
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13 ##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref number of hard clipped bases">
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14 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
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15 ##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
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16 ##INFO=<ID=ExcessHet,Number=1,Type=Float,Description="Phred-scaled p-value for exact test of excess heterozygosity">
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17 ##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
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18 ##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
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19 ##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
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20 ##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed">
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21 ##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed">
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22 ##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
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23 ##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
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24 ##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
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25 ##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
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26 ##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
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27 ##contig=<ID=NC_002945.4,length=4349904>
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28 ##reference=file:///scratch/analysis_staging/a_script/bovis_reanalysis_af2122_2017-12-14/2001-2008/01-1787/NC_002945v4.fasta
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29 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT 01-1787
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30 NC_002945.4 1057 . A G 10912.77 . AC=2;AF=1.00;AN=2;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.56;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,396:396:99:10941,1177,0
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31 NC_002945.4 8741 . T C 8362.77 . AC=2;AF=1.00;AN=2;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.45;SOR=1.392 GT:AD:DP:GQ:PL 1/1:0,250:250:99:8391,748,0
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32 NC_002945.4 14487 . C G 6175.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=31.88;ReadPosRankSum=-0.324;SOR=4.804 GT:AD:DP:GQ:PL 1/1:1,159:160:99:6204,468,0
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33 NC_002945.4 33788 . A G 7640.77 . AC=2;AF=1.00;AN=2;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.31;SOR=4.828 GT:AD:DP:GQ:PL 1/1:0,180:180:99:7669,542,0
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34 NC_002945.4 41437 . T C 10083.77 . AC=2;AF=1.00;AN=2;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.48;SOR=0.870 GT:AD:DP:GQ:PL 1/1:0,342:342:99:10112,1020,0
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35 NC_002945.4 57197 . G C 3714.77 . AC=2;AF=1.00;AN=2;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.21;SOR=3.809 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3743,315,0
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36 NC_002945.4 67098 . G A 7793.77 . AC=2;AF=1.00;AN=2;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.09;SOR=0.867 GT:AD:DP:GQ:PL 1/1:0,259:259:99:7822,775,0
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37 NC_002945.4 69913 . T C 10036.77 . AC=2;AF=1.00;AN=2;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.27;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,321:321:99:10065,956,0
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38 NC_002945.4 103928 . G C 4649.77 . AC=2;AF=1.00;AN=2;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=50.64;QD=27.17;SOR=2.573 GT:AD:DP:GQ:PL 1/1:0,110:110:99:4678,331,0
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39 NC_002945.4 103931 . G C 4505.77 . AC=2;AF=1.00;AN=2;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=50.18;QD=26.01;SOR=2.509 GT:AD:DP:GQ:PL 1/1:0,107:107:99:4534,321,0
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40 NC_002945.4 104264 . A G 241.80 . AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=34.54;QD=34.54;SOR=4.174 GT:AD:DP:GQ:PL 1/1:0,7:7:21:270,21,0
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41 NC_002945.4 119328 . G T 12064.77 . AC=2;AF=1.00;AN=2;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.52;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,423:423:99:12093,1260,0
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42 NC_002945.4 127447 . G C 6051.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.843;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=31.52;ReadPosRankSum=-0.504;SOR=0.572 GT:AD:DP:GQ:PL 1/1:1,191:192:99:6080,562,0
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43 NC_002945.4 130237 . T C 8833.77 . AC=2;AF=1.00;AN=2;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.15;SOR=1.012 GT:AD:DP:GQ:PL 1/1:0,293:293:99:8862,869,0
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44 NC_002945.4 159370 . A G 6799.77 . AC=2;AF=1.00;AN=2;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.34;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6828,648,0
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45 NC_002945.4 160535 . T C 8515.77 . AC=2;AF=1.00;AN=2;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.63;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,278:278:99:8544,826,0
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46 NC_002945.4 165799 . G A 8624.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.926;ClippingRankSum=0.000;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.19;ReadPosRankSum=1.442;SOR=0.272 GT:AD:DP:GQ:PL 1/1:1,305:306:99:8653,897,0
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47 NC_002945.4 166696 . A G 6491.77 . AC=2;AF=1.00;AN=2;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.77;SOR=1.079 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6520,627,0
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48 NC_002945.4 180444 . T C 8771.77 . AC=2;AF=1.00;AN=2;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.94;SOR=1.168 GT:AD:DP:GQ:PL 1/1:0,314:314:99:8800,931,0
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49 NC_002945.4 182704 . G A 7366.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=2.976;ClippingRankSum=0.000;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.49;ReadPosRankSum=1.545;SOR=0.382 GT:AD:DP:GQ:PL 1/1:3,265:268:99:7395,761,0
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50 NC_002945.4 185429 . T C 6597.77 . AC=2;AF=1.00;AN=2;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.02;SOR=2.760 GT:AD:DP:GQ:PL 1/1:0,187:187:99:6626,561,0
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51 NC_002945.4 228660 . C T 6295.77 . AC=2;AF=1.00;AN=2;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.49;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,229:229:99:6324,681,0
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52 NC_002945.4 232188 . G C 4879.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.94;ReadPosRankSum=1.419;SOR=0.712 GT:AD:DP:GQ:PL 1/1:1,162:163:99:4908,474,0
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53 NC_002945.4 246207 . C T 8706.77 . AC=2;AF=1.00;AN=2;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.22;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,298:298:99:8735,889,0
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54 NC_002945.4 255465 . A G 9237.77 . AC=2;AF=1.00;AN=2;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.53;SOR=0.875 GT:AD:DP:GQ:PL 1/1:0,284:284:99:9266,848,0
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55 NC_002945.4 295519 . T C 9658.77 . AC=2;AF=1.00;AN=2;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.36;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,308:308:99:9687,920,0
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56 NC_002945.4 306689 . N . . . . GT ./.
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57 NC_002945.4 306690 . N . . . . GT ./.
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58 NC_002945.4 306691 . N . . . . GT ./.
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59 NC_002945.4 306692 . N . . . . GT ./.
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60 NC_002945.4 306693 . N . . . . GT ./.
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61 NC_002945.4 306694 . N . . . . GT ./.
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62 NC_002945.4 306695 . N . . . . GT ./.
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63 NC_002945.4 306696 . N . . . . GT ./.
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64 NC_002945.4 306697 . N . . . . GT ./.
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65 NC_002945.4 306698 . N . . . . GT ./.
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66 NC_002945.4 306699 . N . . . . GT ./.
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67 NC_002945.4 306700 . N . . . . GT ./.
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68 NC_002945.4 306701 . N . . . . GT ./.
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69 NC_002945.4 306702 . N . . . . GT ./.
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70 NC_002945.4 306703 . N . . . . GT ./.
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71 NC_002945.4 306704 . N . . . . GT ./.
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72 NC_002945.4 306705 . N . . . . GT ./.
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73 NC_002945.4 306706 . N . . . . GT ./.
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74 NC_002945.4 306707 . N . . . . GT ./.
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75 NC_002945.4 306708 . N . . . . GT ./.
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76 NC_002945.4 306709 . N . . . . GT ./.
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77 NC_002945.4 324581 . G A 8321.77 . AC=2;AF=1.00;AN=2;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.72;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,280:280:99:8350,837,0
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78 NC_002945.4 333332 . N . . . . GT ./.
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79 NC_002945.4 333333 . N . . . . GT ./.
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80 NC_002945.4 333334 . N . . . . GT ./.
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81 NC_002945.4 333335 . N . . . . GT ./.
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82 NC_002945.4 333336 . N . . . . GT ./.
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83 NC_002945.4 333337 . N . . . . GT ./.
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84 NC_002945.4 333338 . N . . . . GT ./.
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85 NC_002945.4 333342 . N . . . . GT ./.
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86 NC_002945.4 333343 . N . . . . GT ./.
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87 NC_002945.4 333344 . N . . . . GT ./.
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88 NC_002945.4 333345 . N . . . . GT ./.
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89 NC_002945.4 333346 . N . . . . GT ./.
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90 NC_002945.4 333347 . N . . . . GT ./.
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91 NC_002945.4 333363 . N . . . . GT ./.
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92 NC_002945.4 333364 . N . . . . GT ./.
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93 NC_002945.4 333365 . N . . . . GT ./.
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94 NC_002945.4 333366 . N . . . . GT ./.
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95 NC_002945.4 333367 . N . . . . GT ./.
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96 NC_002945.4 333368 . N . . . . GT ./.
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97 NC_002945.4 333369 . N . . . . GT ./.
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98 NC_002945.4 333370 . N . . . . GT ./.
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99 NC_002945.4 333371 . N . . . . GT ./.
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100 NC_002945.4 333372 . N . . . . GT ./.
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101 NC_002945.4 333373 . N . . . . GT ./.
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102 NC_002945.4 333374 . N . . . . GT ./.
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103 NC_002945.4 333375 . N . . . . GT ./.
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104 NC_002945.4 333376 . N . . . . GT ./.
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105 NC_002945.4 333377 . N . . . . GT ./.
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106 NC_002945.4 333378 . N . . . . GT ./.
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107 NC_002945.4 333379 . N . . . . GT ./.
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108 NC_002945.4 333380 . N . . . . GT ./.
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109 NC_002945.4 333381 . N . . . . GT ./.
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110 NC_002945.4 333382 . N . . . . GT ./.
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111 NC_002945.4 333383 . N . . . . GT ./.
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112 NC_002945.4 333384 . N . . . . GT ./.
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113 NC_002945.4 333385 . N . . . . GT ./.
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114 NC_002945.4 333386 . N . . . . GT ./.
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115 NC_002945.4 333387 . N . . . . GT ./.
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116 NC_002945.4 333388 . N . . . . GT ./.
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117 NC_002945.4 333389 . N . . . . GT ./.
|
|
|
118 NC_002945.4 333390 . N . . . . GT ./.
|
|
|
119 NC_002945.4 333391 . N . . . . GT ./.
|
|
|
120 NC_002945.4 333392 . N . . . . GT ./.
|
|
|
121 NC_002945.4 333393 . N . . . . GT ./.
|
|
|
122 NC_002945.4 333394 . N . . . . GT ./.
|
|
|
123 NC_002945.4 333395 . N . . . . GT ./.
|
|
|
124 NC_002945.4 333396 . N . . . . GT ./.
|
|
|
125 NC_002945.4 333397 . N . . . . GT ./.
|
|
|
126 NC_002945.4 333398 . N . . . . GT ./.
|
|
|
127 NC_002945.4 333399 . N . . . . GT ./.
|
|
|
128 NC_002945.4 333400 . N . . . . GT ./.
|
|
|
129 NC_002945.4 333401 . N . . . . GT ./.
|
|
|
130 NC_002945.4 333402 . N . . . . GT ./.
|
|
|
131 NC_002945.4 333403 . N . . . . GT ./.
|
|
|
132 NC_002945.4 333404 . N . . . . GT ./.
|
|
|
133 NC_002945.4 333405 . N . . . . GT ./.
|
|
|
134 NC_002945.4 333406 . N . . . . GT ./.
|
|
|
135 NC_002945.4 333407 . N . . . . GT ./.
|
|
|
136 NC_002945.4 333408 . N . . . . GT ./.
|
|
|
137 NC_002945.4 333409 . N . . . . GT ./.
|
|
|
138 NC_002945.4 333410 . N . . . . GT ./.
|
|
|
139 NC_002945.4 333495 . N . . . . GT ./.
|
|
|
140 NC_002945.4 333496 . N . . . . GT ./.
|
|
|
141 NC_002945.4 333497 . N . . . . GT ./.
|
|
|
142 NC_002945.4 333498 . N . . . . GT ./.
|
|
|
143 NC_002945.4 333499 . N . . . . GT ./.
|
|
|
144 NC_002945.4 333500 . N . . . . GT ./.
|
|
|
145 NC_002945.4 333501 . N . . . . GT ./.
|
|
|
146 NC_002945.4 333502 . N . . . . GT ./.
|
|
|
147 NC_002945.4 333503 . N . . . . GT ./.
|
|
|
148 NC_002945.4 333504 . N . . . . GT ./.
|
|
|
149 NC_002945.4 333505 . N . . . . GT ./.
|
|
|
150 NC_002945.4 333506 . N . . . . GT ./.
|
|
|
151 NC_002945.4 333507 . N . . . . GT ./.
|
|
|
152 NC_002945.4 333508 . N . . . . GT ./.
|
|
|
153 NC_002945.4 333509 . N . . . . GT ./.
|
|
|
154 NC_002945.4 333510 . N . . . . GT ./.
|
|
|
155 NC_002945.4 333511 . N . . . . GT ./.
|
|
|
156 NC_002945.4 333512 . N . . . . GT ./.
|
|
|
157 NC_002945.4 333513 . N . . . . GT ./.
|
|
|
158 NC_002945.4 333514 . N . . . . GT ./.
|
|
|
159 NC_002945.4 333515 . N . . . . GT ./.
|
|
|
160 NC_002945.4 333516 . N . . . . GT ./.
|
|
|
161 NC_002945.4 333517 . N . . . . GT ./.
|
|
|
162 NC_002945.4 333518 . N . . . . GT ./.
|
|
|
163 NC_002945.4 333519 . N . . . . GT ./.
|
|
|
164 NC_002945.4 333520 . N . . . . GT ./.
|
|
|
165 NC_002945.4 333574 . N . . . . GT ./.
|
|
|
166 NC_002945.4 333575 . N . . . . GT ./.
|
|
|
167 NC_002945.4 333576 . N . . . . GT ./.
|
|
|
168 NC_002945.4 333577 . N . . . . GT ./.
|
|
|
169 NC_002945.4 333578 . N . . . . GT ./.
|
|
|
170 NC_002945.4 333579 . N . . . . GT ./.
|
|
|
171 NC_002945.4 333580 . N . . . . GT ./.
|
|
|
172 NC_002945.4 333581 . N . . . . GT ./.
|
|
|
173 NC_002945.4 333582 . N . . . . GT ./.
|
|
|
174 NC_002945.4 333583 . N . . . . GT ./.
|
|
|
175 NC_002945.4 333584 . N . . . . GT ./.
|
|
|
176 NC_002945.4 333585 . N . . . . GT ./.
|
|
|
177 NC_002945.4 333586 . N . . . . GT ./.
|
|
|
178 NC_002945.4 333587 . N . . . . GT ./.
|
|
|
179 NC_002945.4 333588 . N . . . . GT ./.
|
|
|
180 NC_002945.4 333589 . N . . . . GT ./.
|
|
|
181 NC_002945.4 333590 . N . . . . GT ./.
|
|
|
182 NC_002945.4 333591 . N . . . . GT ./.
|
|
|
183 NC_002945.4 333592 . N . . . . GT ./.
|
|
|
184 NC_002945.4 333593 . N . . . . GT ./.
|
|
|
185 NC_002945.4 333594 . N . . . . GT ./.
|
|
|
186 NC_002945.4 333595 . N . . . . GT ./.
|
|
|
187 NC_002945.4 333596 . N . . . . GT ./.
|
|
|
188 NC_002945.4 333597 . N . . . . GT ./.
|
|
|
189 NC_002945.4 333598 . N . . . . GT ./.
|
|
|
190 NC_002945.4 333599 . N . . . . GT ./.
|
|
|
191 NC_002945.4 333600 . N . . . . GT ./.
|
|
|
192 NC_002945.4 333601 . N . . . . GT ./.
|
|
|
193 NC_002945.4 333602 . N . . . . GT ./.
|
|
|
194 NC_002945.4 333603 . N . . . . GT ./.
|
|
|
195 NC_002945.4 333604 . N . . . . GT ./.
|
|
|
196 NC_002945.4 333605 . N . . . . GT ./.
|
|
|
197 NC_002945.4 333606 . N . . . . GT ./.
|
|
|
198 NC_002945.4 333607 . N . . . . GT ./.
|
|
|
199 NC_002945.4 333608 . N . . . . GT ./.
|
|
|
200 NC_002945.4 333609 . N . . . . GT ./.
|
|
|
201 NC_002945.4 333610 . N . . . . GT ./.
|
|
|
202 NC_002945.4 333611 . N . . . . GT ./.
|
|
|
203 NC_002945.4 333612 . N . . . . GT ./.
|
|
|
204 NC_002945.4 333613 . N . . . . GT ./.
|
|
|
205 NC_002945.4 333614 . N . . . . GT ./.
|
|
|
206 NC_002945.4 333615 . N . . . . GT ./.
|
|
|
207 NC_002945.4 333616 . N . . . . GT ./.
|
|
|
208 NC_002945.4 333617 . N . . . . GT ./.
|
|
|
209 NC_002945.4 333618 . N . . . . GT ./.
|
|
|
210 NC_002945.4 333619 . N . . . . GT ./.
|
|
|
211 NC_002945.4 333620 . N . . . . GT ./.
|
|
|
212 NC_002945.4 333621 . N . . . . GT ./.
|
|
|
213 NC_002945.4 333622 . N . . . . GT ./.
|
|
|
214 NC_002945.4 333623 . N . . . . GT ./.
|
|
|
215 NC_002945.4 333624 . N . . . . GT ./.
|
|
|
216 NC_002945.4 333625 . N . . . . GT ./.
|
|
|
217 NC_002945.4 333626 . N . . . . GT ./.
|
|
|
218 NC_002945.4 333627 . N . . . . GT ./.
|
|
|
219 NC_002945.4 333628 . N . . . . GT ./.
|
|
|
220 NC_002945.4 333629 . N . . . . GT ./.
|
|
|
221 NC_002945.4 333630 . N . . . . GT ./.
|
|
|
222 NC_002945.4 333631 . N . . . . GT ./.
|
|
|
223 NC_002945.4 333632 . N . . . . GT ./.
|
|
|
224 NC_002945.4 333633 . N . . . . GT ./.
|
|
|
225 NC_002945.4 333634 . N . . . . GT ./.
|
|
|
226 NC_002945.4 333635 . N . . . . GT ./.
|
|
|
227 NC_002945.4 333636 . N . . . . GT ./.
|
|
|
228 NC_002945.4 333637 . N . . . . GT ./.
|
|
|
229 NC_002945.4 333638 . N . . . . GT ./.
|
|
|
230 NC_002945.4 333639 . N . . . . GT ./.
|
|
|
231 NC_002945.4 333640 . N . . . . GT ./.
|
|
|
232 NC_002945.4 333641 . N . . . . GT ./.
|
|
|
233 NC_002945.4 333642 . N . . . . GT ./.
|
|
|
234 NC_002945.4 333643 . N . . . . GT ./.
|
|
|
235 NC_002945.4 333644 . N . . . . GT ./.
|
|
|
236 NC_002945.4 333645 . N . . . . GT ./.
|
|
|
237 NC_002945.4 333646 . N . . . . GT ./.
|
|
|
238 NC_002945.4 333647 . N . . . . GT ./.
|
|
|
239 NC_002945.4 333648 . N . . . . GT ./.
|
|
|
240 NC_002945.4 333649 . N . . . . GT ./.
|
|
|
241 NC_002945.4 333650 . N . . . . GT ./.
|
|
|
242 NC_002945.4 334320 . T C 6159.77 . AC=2;AF=1.00;AN=2;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.82;QD=34.79;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,140:140:99:6188,430,0
|
|
|
243 NC_002945.4 334323 . T C 6159.77 . AC=2;AF=1.00;AN=2;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.88;QD=30.48;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,140:140:99:6188,430,0
|
|
|
244 NC_002945.4 334911 . T C 1126.77 . AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.75;QD=34.14;SOR=1.981 GT:AD:DP:GQ:PL 1/1:0,33:33:99:1155,99,0
|
|
|
245 NC_002945.4 339207 . C T 1731.77 . AC=2;AF=1.00;AN=2;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.53;QD=27.70;SOR=5.464 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1760,141,0
|
|
|
246 NC_002945.4 340088 . G T 7466.77 . AC=2;AF=1.00;AN=2;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.52;QD=31.90;SOR=0.951 GT:AD:DP:GQ:PL 1/1:0,163:163:99:7495,503,0
|
|
|
247 NC_002945.4 340097 . C G 7625.77 . AC=2;AF=1.00;AN=2;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.55;QD=26.48;SOR=0.950 GT:AD:DP:GQ:PL 1/1:0,172:172:99:7654,518,0
|
|
|
248 NC_002945.4 341466 . C T 580.77 . AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.66;SOR=1.508 GT:AD:DP:GQ:PL 1/1:0,21:21:61:609,61,0
|
|
|
249 NC_002945.4 362818 . T C 475.77 . AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.98;SOR=2.985 GT:AD:DP:GQ:PL 1/1:0,14:14:41:504,41,0
|
|
|
250 NC_002945.4 364560 . A G 8761.77 . AC=2;AF=1.00;AN=2;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.63;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,277:277:99:8790,827,0
|
|
|
251 NC_002945.4 364804 . T C 8881.77 . AC=2;AF=1.00;AN=2;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.52;SOR=0.928 GT:AD:DP:GQ:PL 1/1:0,291:291:99:8910,868,0
|
|
|
252 NC_002945.4 364938 . A G 8855.77 . AC=2;AF=1.00;AN=2;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.52;SOR=0.955 GT:AD:DP:GQ:PL 1/1:0,281:281:99:8884,838,0
|
|
|
253 NC_002945.4 366022 . T C 7240.77 . AC=2;AF=1.00;AN=2;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.17;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7269,717,0
|
|
|
254 NC_002945.4 397805 . N . . . . GT ./.
|
|
|
255 NC_002945.4 425171 . A G 9315.77 . AC=2;AF=1.00;AN=2;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.58;SOR=1.337 GT:AD:DP:GQ:PL 1/1:0,295:295:99:9344,882,0
|
|
|
256 NC_002945.4 425180 . C G 12925.77 . AC=2;AF=1.00;AN=2;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.45;SOR=1.249 GT:AD:DP:GQ:PL 1/1:0,284:284:99:12954,888,0
|
|
|
257 NC_002945.4 430077 . C T 8390.77 . AC=2;AF=1.00;AN=2;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.35;SOR=0.982 GT:AD:DP:GQ:PL 1/1:0,296:296:99:8419,880,0
|
|
|
258 NC_002945.4 441762 . C T 5249.77 . AC=2;AF=1.00;AN=2;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.53;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5278,544,0
|
|
|
259 NC_002945.4 467343 . C T 7100.77 . AC=2;AF=1.00;AN=2;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.29;SOR=0.950 GT:AD:DP:GQ:PL 1/1:0,251:251:99:7129,743,0
|
|
|
260 NC_002945.4 490878 . G A 10603.77 . AC=2;AF=1.00;AN=2;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.37;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,361:361:99:10632,1077,0
|
|
|
261 NC_002945.4 507929 . T C 8684.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;ClippingRankSum=0.000;DP=305;ExcessHet=3.0103;FS=6.064;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.47;ReadPosRankSum=1.196;SOR=0.141 GT:AD:DP:GQ:PL 1/1:2,303:305:99:8713,890,0
|
|
|
262 NC_002945.4 519412 . T C 5638.77 . AC=2;AF=1.00;AN=2;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.68;SOR=1.055 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5667,529,0
|
|
|
263 NC_002945.4 544180 . C T 8067.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.894;ClippingRankSum=0.000;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.31;ReadPosRankSum=-0.364;SOR=0.410 GT:AD:DP:GQ:PL 1/1:1,284:285:99:8096,836,0
|
|
|
264 NC_002945.4 598704 . C G 9550.77 . AC=2;AF=1.00;AN=2;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.91;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,309:309:99:9579,925,0
|
|
|
265 NC_002945.4 602816 . A C 6370.77 . AC=2;AF=1.00;AN=2;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.23;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6399,609,0
|
|
|
266 NC_002945.4 611077 . A G 8592.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.869;ClippingRankSum=0.000;DP=289;ExcessHet=3.0103;FS=4.300;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.84;ReadPosRankSum=3.109;SOR=1.145 GT:AD:DP:GQ:PL 1/1:1,287:288:99:8621,846,0
|
|
|
267 NC_002945.4 616758 . C T 5823.77 . AC=2;AF=1.00;AN=2;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.83;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5852,601,0
|
|
|
268 NC_002945.4 622386 . C G 7860.77 . AC=2;AF=1.00;AN=2;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.22;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7889,731,0
|
|
|
269 NC_002945.4 624481 . N . . . . GT ./.
|
|
|
270 NC_002945.4 624482 . N . . . . GT ./.
|
|
|
271 NC_002945.4 624483 . N . . . . GT ./.
|
|
|
272 NC_002945.4 624484 . N . . . . GT ./.
|
|
|
273 NC_002945.4 624485 . N . . . . GT ./.
|
|
|
274 NC_002945.4 624486 . N . . . . GT ./.
|
|
|
275 NC_002945.4 624487 . N . . . . GT ./.
|
|
|
276 NC_002945.4 624488 . N . . . . GT ./.
|
|
|
277 NC_002945.4 624489 . N . . . . GT ./.
|
|
|
278 NC_002945.4 624490 . N . . . . GT ./.
|
|
|
279 NC_002945.4 624491 . N . . . . GT ./.
|
|
|
280 NC_002945.4 624492 . N . . . . GT ./.
|
|
|
281 NC_002945.4 624493 . N . . . . GT ./.
|
|
|
282 NC_002945.4 624494 . N . . . . GT ./.
|
|
|
283 NC_002945.4 624495 . N . . . . GT ./.
|
|
|
284 NC_002945.4 624496 . N . . . . GT ./.
|
|
|
285 NC_002945.4 624497 . N . . . . GT ./.
|
|
|
286 NC_002945.4 624498 . N . . . . GT ./.
|
|
|
287 NC_002945.4 624499 . N . . . . GT ./.
|
|
|
288 NC_002945.4 624500 . N . . . . GT ./.
|
|
|
289 NC_002945.4 624501 . N . . . . GT ./.
|
|
|
290 NC_002945.4 624502 . N . . . . GT ./.
|
|
|
291 NC_002945.4 624503 . N . . . . GT ./.
|
|
|
292 NC_002945.4 624504 . N . . . . GT ./.
|
|
|
293 NC_002945.4 624505 . N . . . . GT ./.
|
|
|
294 NC_002945.4 624506 . N . . . . GT ./.
|
|
|
295 NC_002945.4 624507 . N . . . . GT ./.
|
|
|
296 NC_002945.4 624508 . N . . . . GT ./.
|
|
|
297 NC_002945.4 624509 . N . . . . GT ./.
|
|
|
298 NC_002945.4 624510 . N . . . . GT ./.
|
|
|
299 NC_002945.4 624511 . N . . . . GT ./.
|
|
|
300 NC_002945.4 624512 . N . . . . GT ./.
|
|
|
301 NC_002945.4 624513 . N . . . . GT ./.
|
|
|
302 NC_002945.4 624514 . N . . . . GT ./.
|
|
|
303 NC_002945.4 624515 . N . . . . GT ./.
|
|
|
304 NC_002945.4 624516 . N . . . . GT ./.
|
|
|
305 NC_002945.4 624517 . N . . . . GT ./.
|
|
|
306 NC_002945.4 624518 . N . . . . GT ./.
|
|
|
307 NC_002945.4 624519 . N . . . . GT ./.
|
|
|
308 NC_002945.4 624520 . N . . . . GT ./.
|
|
|
309 NC_002945.4 624521 . N . . . . GT ./.
|
|
|
310 NC_002945.4 624522 . N . . . . GT ./.
|
|
|
311 NC_002945.4 624523 . N . . . . GT ./.
|
|
|
312 NC_002945.4 624524 . N . . . . GT ./.
|
|
|
313 NC_002945.4 624525 . N . . . . GT ./.
|
|
|
314 NC_002945.4 624526 . N . . . . GT ./.
|
|
|
315 NC_002945.4 624527 . N . . . . GT ./.
|
|
|
316 NC_002945.4 624528 . N . . . . GT ./.
|
|
|
317 NC_002945.4 624529 . N . . . . GT ./.
|
|
|
318 NC_002945.4 624530 . N . . . . GT ./.
|
|
|
319 NC_002945.4 624531 . N . . . . GT ./.
|
|
|
320 NC_002945.4 624532 . N . . . . GT ./.
|
|
|
321 NC_002945.4 624533 . N . . . . GT ./.
|
|
|
322 NC_002945.4 624534 . N . . . . GT ./.
|
|
|
323 NC_002945.4 624535 . N . . . . GT ./.
|
|
|
324 NC_002945.4 624536 . N . . . . GT ./.
|
|
|
325 NC_002945.4 624537 . N . . . . GT ./.
|
|
|
326 NC_002945.4 624538 . N . . . . GT ./.
|
|
|
327 NC_002945.4 624539 . N . . . . GT ./.
|
|
|
328 NC_002945.4 624540 . N . . . . GT ./.
|
|
|
329 NC_002945.4 624541 . N . . . . GT ./.
|
|
|
330 NC_002945.4 624542 . N . . . . GT ./.
|
|
|
331 NC_002945.4 624543 . N . . . . GT ./.
|
|
|
332 NC_002945.4 624544 . N . . . . GT ./.
|
|
|
333 NC_002945.4 624545 . N . . . . GT ./.
|
|
|
334 NC_002945.4 624546 . N . . . . GT ./.
|
|
|
335 NC_002945.4 624547 . N . . . . GT ./.
|
|
|
336 NC_002945.4 624548 . N . . . . GT ./.
|
|
|
337 NC_002945.4 624549 . N . . . . GT ./.
|
|
|
338 NC_002945.4 624550 . N . . . . GT ./.
|
|
|
339 NC_002945.4 624551 . N . . . . GT ./.
|
|
|
340 NC_002945.4 624552 . N . . . . GT ./.
|
|
|
341 NC_002945.4 624553 . N . . . . GT ./.
|
|
|
342 NC_002945.4 624554 . N . . . . GT ./.
|
|
|
343 NC_002945.4 624555 . N . . . . GT ./.
|
|
|
344 NC_002945.4 624556 . N . . . . GT ./.
|
|
|
345 NC_002945.4 624557 . N . . . . GT ./.
|
|
|
346 NC_002945.4 624558 . N . . . . GT ./.
|
|
|
347 NC_002945.4 624559 . N . . . . GT ./.
|
|
|
348 NC_002945.4 624560 . N . . . . GT ./.
|
|
|
349 NC_002945.4 624561 . N . . . . GT ./.
|
|
|
350 NC_002945.4 624562 . N . . . . GT ./.
|
|
|
351 NC_002945.4 624563 . N . . . . GT ./.
|
|
|
352 NC_002945.4 624564 . N . . . . GT ./.
|
|
|
353 NC_002945.4 624565 . N . . . . GT ./.
|
|
|
354 NC_002945.4 624566 . N . . . . GT ./.
|
|
|
355 NC_002945.4 624567 . N . . . . GT ./.
|
|
|
356 NC_002945.4 624568 . N . . . . GT ./.
|
|
|
357 NC_002945.4 624569 . N . . . . GT ./.
|
|
|
358 NC_002945.4 624570 . N . . . . GT ./.
|
|
|
359 NC_002945.4 624571 . N . . . . GT ./.
|
|
|
360 NC_002945.4 624572 . N . . . . GT ./.
|
|
|
361 NC_002945.4 624573 . N . . . . GT ./.
|
|
|
362 NC_002945.4 624574 . N . . . . GT ./.
|
|
|
363 NC_002945.4 624575 . N . . . . GT ./.
|
|
|
364 NC_002945.4 624576 . N . . . . GT ./.
|
|
|
365 NC_002945.4 624577 . N . . . . GT ./.
|
|
|
366 NC_002945.4 624578 . N . . . . GT ./.
|
|
|
367 NC_002945.4 624579 . N . . . . GT ./.
|
|
|
368 NC_002945.4 624580 . N . . . . GT ./.
|
|
|
369 NC_002945.4 624581 . N . . . . GT ./.
|
|
|
370 NC_002945.4 624582 . N . . . . GT ./.
|
|
|
371 NC_002945.4 624583 . N . . . . GT ./.
|
|
|
372 NC_002945.4 624584 . N . . . . GT ./.
|
|
|
373 NC_002945.4 624585 . N . . . . GT ./.
|
|
|
374 NC_002945.4 624586 . N . . . . GT ./.
|
|
|
375 NC_002945.4 624587 . N . . . . GT ./.
|
|
|
376 NC_002945.4 624588 . N . . . . GT ./.
|
|
|
377 NC_002945.4 624589 . N . . . . GT ./.
|
|
|
378 NC_002945.4 624590 . N . . . . GT ./.
|
|
|
379 NC_002945.4 624591 . N . . . . GT ./.
|
|
|
380 NC_002945.4 624592 . N . . . . GT ./.
|
|
|
381 NC_002945.4 624593 . N . . . . GT ./.
|
|
|
382 NC_002945.4 624594 . N . . . . GT ./.
|
|
|
383 NC_002945.4 624595 . N . . . . GT ./.
|
|
|
384 NC_002945.4 624596 . N . . . . GT ./.
|
|
|
385 NC_002945.4 624597 . N . . . . GT ./.
|
|
|
386 NC_002945.4 624598 . N . . . . GT ./.
|
|
|
387 NC_002945.4 624599 . N . . . . GT ./.
|
|
|
388 NC_002945.4 624600 . N . . . . GT ./.
|
|
|
389 NC_002945.4 624601 . N . . . . GT ./.
|
|
|
390 NC_002945.4 624602 . N . . . . GT ./.
|
|
|
391 NC_002945.4 624603 . N . . . . GT ./.
|
|
|
392 NC_002945.4 624604 . N . . . . GT ./.
|
|
|
393 NC_002945.4 624605 . N . . . . GT ./.
|
|
|
394 NC_002945.4 624606 . N . . . . GT ./.
|
|
|
395 NC_002945.4 624607 . N . . . . GT ./.
|
|
|
396 NC_002945.4 624608 . N . . . . GT ./.
|
|
|
397 NC_002945.4 624609 . N . . . . GT ./.
|
|
|
398 NC_002945.4 624610 . N . . . . GT ./.
|
|
|
399 NC_002945.4 624611 . N . . . . GT ./.
|
|
|
400 NC_002945.4 624612 . N . . . . GT ./.
|
|
|
401 NC_002945.4 624613 . N . . . . GT ./.
|
|
|
402 NC_002945.4 624614 . N . . . . GT ./.
|
|
|
403 NC_002945.4 624615 . N . . . . GT ./.
|
|
|
404 NC_002945.4 624616 . N . . . . GT ./.
|
|
|
405 NC_002945.4 624617 . N . . . . GT ./.
|
|
|
406 NC_002945.4 624618 . N . . . . GT ./.
|
|
|
407 NC_002945.4 624619 . N . . . . GT ./.
|
|
|
408 NC_002945.4 624620 . N . . . . GT ./.
|
|
|
409 NC_002945.4 624621 . N . . . . GT ./.
|
|
|
410 NC_002945.4 624622 . N . . . . GT ./.
|
|
|
411 NC_002945.4 624623 . N . . . . GT ./.
|
|
|
412 NC_002945.4 624624 . N . . . . GT ./.
|
|
|
413 NC_002945.4 624625 . N . . . . GT ./.
|
|
|
414 NC_002945.4 624626 . N . . . . GT ./.
|
|
|
415 NC_002945.4 624627 . N . . . . GT ./.
|
|
|
416 NC_002945.4 624628 . N . . . . GT ./.
|
|
|
417 NC_002945.4 624629 . N . . . . GT ./.
|
|
|
418 NC_002945.4 624630 . N . . . . GT ./.
|
|
|
419 NC_002945.4 624631 . N . . . . GT ./.
|
|
|
420 NC_002945.4 624632 . N . . . . GT ./.
|
|
|
421 NC_002945.4 624633 . N . . . . GT ./.
|
|
|
422 NC_002945.4 624634 . N . . . . GT ./.
|
|
|
423 NC_002945.4 624635 . N . . . . GT ./.
|
|
|
424 NC_002945.4 624636 . N . . . . GT ./.
|
|
|
425 NC_002945.4 624637 . N . . . . GT ./.
|
|
|
426 NC_002945.4 624638 . N . . . . GT ./.
|
|
|
427 NC_002945.4 624639 . N . . . . GT ./.
|
|
|
428 NC_002945.4 624640 . N . . . . GT ./.
|
|
|
429 NC_002945.4 624641 . N . . . . GT ./.
|
|
|
430 NC_002945.4 624642 . N . . . . GT ./.
|
|
|
431 NC_002945.4 624643 . N . . . . GT ./.
|
|
|
432 NC_002945.4 624644 . N . . . . GT ./.
|
|
|
433 NC_002945.4 624645 . N . . . . GT ./.
|
|
|
434 NC_002945.4 624646 . N . . . . GT ./.
|
|
|
435 NC_002945.4 624647 . N . . . . GT ./.
|
|
|
436 NC_002945.4 624648 . N . . . . GT ./.
|
|
|
437 NC_002945.4 624649 . N . . . . GT ./.
|
|
|
438 NC_002945.4 624650 . N . . . . GT ./.
|
|
|
439 NC_002945.4 624651 . N . . . . GT ./.
|
|
|
440 NC_002945.4 624652 . N . . . . GT ./.
|
|
|
441 NC_002945.4 624653 . N . . . . GT ./.
|
|
|
442 NC_002945.4 624654 . N . . . . GT ./.
|
|
|
443 NC_002945.4 624655 . N . . . . GT ./.
|
|
|
444 NC_002945.4 624656 . N . . . . GT ./.
|
|
|
445 NC_002945.4 624657 . N . . . . GT ./.
|
|
|
446 NC_002945.4 624658 . N . . . . GT ./.
|
|
|
447 NC_002945.4 624659 . N . . . . GT ./.
|
|
|
448 NC_002945.4 624660 . N . . . . GT ./.
|
|
|
449 NC_002945.4 624661 . N . . . . GT ./.
|
|
|
450 NC_002945.4 624662 . N . . . . GT ./.
|
|
|
451 NC_002945.4 624663 . N . . . . GT ./.
|
|
|
452 NC_002945.4 624664 . N . . . . GT ./.
|
|
|
453 NC_002945.4 624665 . N . . . . GT ./.
|
|
|
454 NC_002945.4 624666 . N . . . . GT ./.
|
|
|
455 NC_002945.4 624667 . N . . . . GT ./.
|
|
|
456 NC_002945.4 624668 . N . . . . GT ./.
|
|
|
457 NC_002945.4 624890 . N . . . . GT ./.
|
|
|
458 NC_002945.4 624891 . N . . . . GT ./.
|
|
|
459 NC_002945.4 624892 . N . . . . GT ./.
|
|
|
460 NC_002945.4 624893 . N . . . . GT ./.
|
|
|
461 NC_002945.4 624894 . N . . . . GT ./.
|
|
|
462 NC_002945.4 624895 . N . . . . GT ./.
|
|
|
463 NC_002945.4 624896 . N . . . . GT ./.
|
|
|
464 NC_002945.4 624897 . N . . . . GT ./.
|
|
|
465 NC_002945.4 624898 . N . . . . GT ./.
|
|
|
466 NC_002945.4 624899 . N . . . . GT ./.
|
|
|
467 NC_002945.4 624900 . N . . . . GT ./.
|
|
|
468 NC_002945.4 624901 . N . . . . GT ./.
|
|
|
469 NC_002945.4 624902 . N . . . . GT ./.
|
|
|
470 NC_002945.4 624903 . N . . . . GT ./.
|
|
|
471 NC_002945.4 624904 . N . . . . GT ./.
|
|
|
472 NC_002945.4 624905 . N . . . . GT ./.
|
|
|
473 NC_002945.4 624906 . N . . . . GT ./.
|
|
|
474 NC_002945.4 624907 . N . . . . GT ./.
|
|
|
475 NC_002945.4 624908 . N . . . . GT ./.
|
|
|
476 NC_002945.4 624909 . N . . . . GT ./.
|
|
|
477 NC_002945.4 624910 . N . . . . GT ./.
|
|
|
478 NC_002945.4 624911 . N . . . . GT ./.
|
|
|
479 NC_002945.4 624912 . N . . . . GT ./.
|
|
|
480 NC_002945.4 624913 . N . . . . GT ./.
|
|
|
481 NC_002945.4 624914 . N . . . . GT ./.
|
|
|
482 NC_002945.4 624915 . N . . . . GT ./.
|
|
|
483 NC_002945.4 624916 . N . . . . GT ./.
|
|
|
484 NC_002945.4 624917 . N . . . . GT ./.
|
|
|
485 NC_002945.4 639982 . A C 7683.77 . AC=2;AF=1.00;AN=2;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.15;SOR=0.964 GT:AD:DP:GQ:PL 1/1:0,239:239:99:7712,711,0
|
|
|
486 NC_002945.4 644245 . C G 7458.77 . AC=2;AF=1.00;AN=2;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.91;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,258:258:99:7487,767,0
|
|
|
487 NC_002945.4 649910 . T C 9252.77 . AC=2;AF=1.00;AN=2;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.44;SOR=0.878 GT:AD:DP:GQ:PL 1/1:0,304:304:99:9281,906,0
|
|
|
488 NC_002945.4 669797 . C T 7566.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.881;ClippingRankSum=0.000;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.03;ReadPosRankSum=1.178;SOR=0.245 GT:AD:DP:GQ:PL 1/1:1,269:270:99:7595,789,0
|
|
|
489 NC_002945.4 673880 . T C 1212.77 . AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.69;SOR=1.371 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1241,107,0
|
|
|
490 NC_002945.4 676376 . N . . . . GT ./.
|
|
|
491 NC_002945.4 676377 . N . . . . GT ./.
|
|
|
492 NC_002945.4 676378 . N . . . . GT ./.
|
|
|
493 NC_002945.4 676379 . N . . . . GT ./.
|
|
|
494 NC_002945.4 676380 . N . . . . GT ./.
|
|
|
495 NC_002945.4 676381 . N . . . . GT ./.
|
|
|
496 NC_002945.4 676382 . N . . . . GT ./.
|
|
|
497 NC_002945.4 676383 . N . . . . GT ./.
|
|
|
498 NC_002945.4 676384 . N . . . . GT ./.
|
|
|
499 NC_002945.4 676385 . N . . . . GT ./.
|
|
|
500 NC_002945.4 676386 . N . . . . GT ./.
|
|
|
501 NC_002945.4 676387 . N . . . . GT ./.
|
|
|
502 NC_002945.4 676388 . N . . . . GT ./.
|
|
|
503 NC_002945.4 676389 . N . . . . GT ./.
|
|
|
504 NC_002945.4 676390 . N . . . . GT ./.
|
|
|
505 NC_002945.4 676391 . N . . . . GT ./.
|
|
|
506 NC_002945.4 676392 . N . . . . GT ./.
|
|
|
507 NC_002945.4 676393 . N . . . . GT ./.
|
|
|
508 NC_002945.4 676394 . N . . . . GT ./.
|
|
|
509 NC_002945.4 676395 . N . . . . GT ./.
|
|
|
510 NC_002945.4 676396 . N . . . . GT ./.
|
|
|
511 NC_002945.4 676397 . N . . . . GT ./.
|
|
|
512 NC_002945.4 676398 . N . . . . GT ./.
|
|
|
513 NC_002945.4 676399 . N . . . . GT ./.
|
|
|
514 NC_002945.4 676400 . N . . . . GT ./.
|
|
|
515 NC_002945.4 676401 . N . . . . GT ./.
|
|
|
516 NC_002945.4 676402 . N . . . . GT ./.
|
|
|
517 NC_002945.4 676403 . N . . . . GT ./.
|
|
|
518 NC_002945.4 676404 . N . . . . GT ./.
|
|
|
519 NC_002945.4 676405 . N . . . . GT ./.
|
|
|
520 NC_002945.4 676406 . N . . . . GT ./.
|
|
|
521 NC_002945.4 676407 . N . . . . GT ./.
|
|
|
522 NC_002945.4 676408 . N . . . . GT ./.
|
|
|
523 NC_002945.4 676409 . N . . . . GT ./.
|
|
|
524 NC_002945.4 676410 . N . . . . GT ./.
|
|
|
525 NC_002945.4 676411 . N . . . . GT ./.
|
|
|
526 NC_002945.4 676412 . N . . . . GT ./.
|
|
|
527 NC_002945.4 676413 . N . . . . GT ./.
|
|
|
528 NC_002945.4 676414 . N . . . . GT ./.
|
|
|
529 NC_002945.4 676415 . N . . . . GT ./.
|
|
|
530 NC_002945.4 676416 . N . . . . GT ./.
|
|
|
531 NC_002945.4 676417 . N . . . . GT ./.
|
|
|
532 NC_002945.4 676418 . N . . . . GT ./.
|
|
|
533 NC_002945.4 676419 . N . . . . GT ./.
|
|
|
534 NC_002945.4 676420 . N . . . . GT ./.
|
|
|
535 NC_002945.4 676421 . N . . . . GT ./.
|
|
|
536 NC_002945.4 676422 . N . . . . GT ./.
|
|
|
537 NC_002945.4 676423 . N . . . . GT ./.
|
|
|
538 NC_002945.4 676424 . N . . . . GT ./.
|
|
|
539 NC_002945.4 676425 . N . . . . GT ./.
|
|
|
540 NC_002945.4 676426 . N . . . . GT ./.
|
|
|
541 NC_002945.4 676427 . N . . . . GT ./.
|
|
|
542 NC_002945.4 676428 . N . . . . GT ./.
|
|
|
543 NC_002945.4 676429 . N . . . . GT ./.
|
|
|
544 NC_002945.4 676430 . N . . . . GT ./.
|
|
|
545 NC_002945.4 676431 . N . . . . GT ./.
|
|
|
546 NC_002945.4 676432 . N . . . . GT ./.
|
|
|
547 NC_002945.4 676433 . N . . . . GT ./.
|
|
|
548 NC_002945.4 676434 . N . . . . GT ./.
|
|
|
549 NC_002945.4 676435 . N . . . . GT ./.
|
|
|
550 NC_002945.4 676436 . N . . . . GT ./.
|
|
|
551 NC_002945.4 676437 . N . . . . GT ./.
|
|
|
552 NC_002945.4 676438 . N . . . . GT ./.
|
|
|
553 NC_002945.4 676439 . N . . . . GT ./.
|
|
|
554 NC_002945.4 676440 . N . . . . GT ./.
|
|
|
555 NC_002945.4 676441 . N . . . . GT ./.
|
|
|
556 NC_002945.4 676442 . N . . . . GT ./.
|
|
|
557 NC_002945.4 676443 . N . . . . GT ./.
|
|
|
558 NC_002945.4 676444 . N . . . . GT ./.
|
|
|
559 NC_002945.4 676445 . N . . . . GT ./.
|
|
|
560 NC_002945.4 676446 . N . . . . GT ./.
|
|
|
561 NC_002945.4 676447 . N . . . . GT ./.
|
|
|
562 NC_002945.4 676448 . N . . . . GT ./.
|
|
|
563 NC_002945.4 676449 . N . . . . GT ./.
|
|
|
564 NC_002945.4 676450 . N . . . . GT ./.
|
|
|
565 NC_002945.4 676451 . N . . . . GT ./.
|
|
|
566 NC_002945.4 676452 . N . . . . GT ./.
|
|
|
567 NC_002945.4 676453 . N . . . . GT ./.
|
|
|
568 NC_002945.4 676454 . N . . . . GT ./.
|
|
|
569 NC_002945.4 676455 . N . . . . GT ./.
|
|
|
570 NC_002945.4 676456 . N . . . . GT ./.
|
|
|
571 NC_002945.4 676457 . N . . . . GT ./.
|
|
|
572 NC_002945.4 676458 . N . . . . GT ./.
|
|
|
573 NC_002945.4 676459 . N . . . . GT ./.
|
|
|
574 NC_002945.4 676460 . N . . . . GT ./.
|
|
|
575 NC_002945.4 676461 . N . . . . GT ./.
|
|
|
576 NC_002945.4 676462 . N . . . . GT ./.
|
|
|
577 NC_002945.4 676463 . N . . . . GT ./.
|
|
|
578 NC_002945.4 676464 . N . . . . GT ./.
|
|
|
579 NC_002945.4 676465 . N . . . . GT ./.
|
|
|
580 NC_002945.4 676466 . N . . . . GT ./.
|
|
|
581 NC_002945.4 676467 . N . . . . GT ./.
|
|
|
582 NC_002945.4 676468 . N . . . . GT ./.
|
|
|
583 NC_002945.4 676469 . N . . . . GT ./.
|
|
|
584 NC_002945.4 676470 . N . . . . GT ./.
|
|
|
585 NC_002945.4 676471 . N . . . . GT ./.
|
|
|
586 NC_002945.4 676472 . N . . . . GT ./.
|
|
|
587 NC_002945.4 676473 . N . . . . GT ./.
|
|
|
588 NC_002945.4 676474 . N . . . . GT ./.
|
|
|
589 NC_002945.4 676475 . N . . . . GT ./.
|
|
|
590 NC_002945.4 676476 . N . . . . GT ./.
|
|
|
591 NC_002945.4 676477 . N . . . . GT ./.
|
|
|
592 NC_002945.4 676478 . N . . . . GT ./.
|
|
|
593 NC_002945.4 676479 . N . . . . GT ./.
|
|
|
594 NC_002945.4 676480 . N . . . . GT ./.
|
|
|
595 NC_002945.4 676481 . N . . . . GT ./.
|
|
|
596 NC_002945.4 676482 . N . . . . GT ./.
|
|
|
597 NC_002945.4 676483 . N . . . . GT ./.
|
|
|
598 NC_002945.4 676484 . N . . . . GT ./.
|
|
|
599 NC_002945.4 676485 . N . . . . GT ./.
|
|
|
600 NC_002945.4 676486 . N . . . . GT ./.
|
|
|
601 NC_002945.4 676487 . N . . . . GT ./.
|
|
|
602 NC_002945.4 676488 . N . . . . GT ./.
|
|
|
603 NC_002945.4 676489 . N . . . . GT ./.
|
|
|
604 NC_002945.4 676490 . N . . . . GT ./.
|
|
|
605 NC_002945.4 676491 . N . . . . GT ./.
|
|
|
606 NC_002945.4 676492 . N . . . . GT ./.
|
|
|
607 NC_002945.4 676493 . N . . . . GT ./.
|
|
|
608 NC_002945.4 676494 . N . . . . GT ./.
|
|
|
609 NC_002945.4 676495 . N . . . . GT ./.
|
|
|
610 NC_002945.4 676496 . N . . . . GT ./.
|
|
|
611 NC_002945.4 676497 . N . . . . GT ./.
|
|
|
612 NC_002945.4 676498 . N . . . . GT ./.
|
|
|
613 NC_002945.4 676499 . N . . . . GT ./.
|
|
|
614 NC_002945.4 676500 . N . . . . GT ./.
|
|
|
615 NC_002945.4 676501 . N . . . . GT ./.
|
|
|
616 NC_002945.4 676502 . N . . . . GT ./.
|
|
|
617 NC_002945.4 676503 . N . . . . GT ./.
|
|
|
618 NC_002945.4 676504 . N . . . . GT ./.
|
|
|
619 NC_002945.4 676505 . N . . . . GT ./.
|
|
|
620 NC_002945.4 676506 . N . . . . GT ./.
|
|
|
621 NC_002945.4 676507 . N . . . . GT ./.
|
|
|
622 NC_002945.4 676508 . N . . . . GT ./.
|
|
|
623 NC_002945.4 676509 . N . . . . GT ./.
|
|
|
624 NC_002945.4 676510 . N . . . . GT ./.
|
|
|
625 NC_002945.4 676511 . N . . . . GT ./.
|
|
|
626 NC_002945.4 676512 . N . . . . GT ./.
|
|
|
627 NC_002945.4 676513 . N . . . . GT ./.
|
|
|
628 NC_002945.4 676514 . N . . . . GT ./.
|
|
|
629 NC_002945.4 676515 . N . . . . GT ./.
|
|
|
630 NC_002945.4 676516 . N . . . . GT ./.
|
|
|
631 NC_002945.4 676517 . N . . . . GT ./.
|
|
|
632 NC_002945.4 676518 . N . . . . GT ./.
|
|
|
633 NC_002945.4 676519 . N . . . . GT ./.
|
|
|
634 NC_002945.4 676520 . N . . . . GT ./.
|
|
|
635 NC_002945.4 676521 . N . . . . GT ./.
|
|
|
636 NC_002945.4 676522 . N . . . . GT ./.
|
|
|
637 NC_002945.4 676523 . N . . . . GT ./.
|
|
|
638 NC_002945.4 676524 . N . . . . GT ./.
|
|
|
639 NC_002945.4 676525 . N . . . . GT ./.
|
|
|
640 NC_002945.4 676526 . N . . . . GT ./.
|
|
|
641 NC_002945.4 676527 . N . . . . GT ./.
|
|
|
642 NC_002945.4 676528 . N . . . . GT ./.
|
|
|
643 NC_002945.4 676529 . N . . . . GT ./.
|
|
|
644 NC_002945.4 676530 . N . . . . GT ./.
|
|
|
645 NC_002945.4 676531 . N . . . . GT ./.
|
|
|
646 NC_002945.4 676532 . N . . . . GT ./.
|
|
|
647 NC_002945.4 676533 . N . . . . GT ./.
|
|
|
648 NC_002945.4 676534 . N . . . . GT ./.
|
|
|
649 NC_002945.4 676535 . N . . . . GT ./.
|
|
|
650 NC_002945.4 676536 . N . . . . GT ./.
|
|
|
651 NC_002945.4 676537 . N . . . . GT ./.
|
|
|
652 NC_002945.4 676538 . N . . . . GT ./.
|
|
|
653 NC_002945.4 676539 . N . . . . GT ./.
|
|
|
654 NC_002945.4 676540 . N . . . . GT ./.
|
|
|
655 NC_002945.4 676541 . N . . . . GT ./.
|
|
|
656 NC_002945.4 676542 . N . . . . GT ./.
|
|
|
657 NC_002945.4 676543 . N . . . . GT ./.
|
|
|
658 NC_002945.4 676544 . N . . . . GT ./.
|
|
|
659 NC_002945.4 676545 . N . . . . GT ./.
|
|
|
660 NC_002945.4 676546 . N . . . . GT ./.
|
|
|
661 NC_002945.4 676547 . N . . . . GT ./.
|
|
|
662 NC_002945.4 676548 . N . . . . GT ./.
|
|
|
663 NC_002945.4 676549 . N . . . . GT ./.
|
|
|
664 NC_002945.4 676550 . N . . . . GT ./.
|
|
|
665 NC_002945.4 676551 . N . . . . GT ./.
|
|
|
666 NC_002945.4 676552 . N . . . . GT ./.
|
|
|
667 NC_002945.4 676553 . N . . . . GT ./.
|
|
|
668 NC_002945.4 676554 . N . . . . GT ./.
|
|
|
669 NC_002945.4 676555 . N . . . . GT ./.
|
|
|
670 NC_002945.4 676556 . N . . . . GT ./.
|
|
|
671 NC_002945.4 676557 . N . . . . GT ./.
|
|
|
672 NC_002945.4 676558 . N . . . . GT ./.
|
|
|
673 NC_002945.4 676559 . N . . . . GT ./.
|
|
|
674 NC_002945.4 676560 . N . . . . GT ./.
|
|
|
675 NC_002945.4 676561 . N . . . . GT ./.
|
|
|
676 NC_002945.4 676562 . N . . . . GT ./.
|
|
|
677 NC_002945.4 676563 . N . . . . GT ./.
|
|
|
678 NC_002945.4 676564 . N . . . . GT ./.
|
|
|
679 NC_002945.4 676565 . N . . . . GT ./.
|
|
|
680 NC_002945.4 676566 . N . . . . GT ./.
|
|
|
681 NC_002945.4 676567 . N . . . . GT ./.
|
|
|
682 NC_002945.4 676568 . N . . . . GT ./.
|
|
|
683 NC_002945.4 676569 . N . . . . GT ./.
|
|
|
684 NC_002945.4 676570 . N . . . . GT ./.
|
|
|
685 NC_002945.4 676571 . N . . . . GT ./.
|
|
|
686 NC_002945.4 676572 . N . . . . GT ./.
|
|
|
687 NC_002945.4 676573 . N . . . . GT ./.
|
|
|
688 NC_002945.4 676574 . N . . . . GT ./.
|
|
|
689 NC_002945.4 676575 . N . . . . GT ./.
|
|
|
690 NC_002945.4 676576 . N . . . . GT ./.
|
|
|
691 NC_002945.4 676577 . N . . . . GT ./.
|
|
|
692 NC_002945.4 676578 . N . . . . GT ./.
|
|
|
693 NC_002945.4 676579 . N . . . . GT ./.
|
|
|
694 NC_002945.4 676580 . N . . . . GT ./.
|
|
|
695 NC_002945.4 676581 . N . . . . GT ./.
|
|
|
696 NC_002945.4 676582 . N . . . . GT ./.
|
|
|
697 NC_002945.4 676583 . N . . . . GT ./.
|
|
|
698 NC_002945.4 676584 . N . . . . GT ./.
|
|
|
699 NC_002945.4 676585 . N . . . . GT ./.
|
|
|
700 NC_002945.4 676586 . N . . . . GT ./.
|
|
|
701 NC_002945.4 676587 . N . . . . GT ./.
|
|
|
702 NC_002945.4 676588 . N . . . . GT ./.
|
|
|
703 NC_002945.4 676589 . N . . . . GT ./.
|
|
|
704 NC_002945.4 676590 . N . . . . GT ./.
|
|
|
705 NC_002945.4 676591 . N . . . . GT ./.
|
|
|
706 NC_002945.4 676592 . N . . . . GT ./.
|
|
|
707 NC_002945.4 680416 . C T 9113.77 . AC=2;AF=1.00;AN=2;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.40;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,310:310:99:9142,919,0
|
|
|
708 NC_002945.4 685069 . T C 4998.77 . AC=2;AF=1.00;AN=2;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.67;SOR=1.482 GT:AD:DP:GQ:PL 1/1:0,163:163:99:5027,487,0
|
|
|
709 NC_002945.4 698889 . T C 253.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=1.769;ClippingRankSum=0.000;DP=270;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=0.959;SOR=0.459 GT:AD:DP:GQ:PL 0/1:235,31:266:99:282,0,7083
|
|
|
710 NC_002945.4 701329 . G C 4240.77 . AC=2;AF=1.00;AN=2;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.62;SOR=2.961 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4269,387,0
|
|
|
711 NC_002945.4 701386 . A G 5073.77 . AC=2;AF=1.00;AN=2;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.99;SOR=1.710 GT:AD:DP:GQ:PL 1/1:0,145:145:99:5102,435,0
|
|
|
712 NC_002945.4 704374 . A G 7568.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=3.841;ClippingRankSum=0.000;DP=262;ExcessHet=3.0103;FS=28.810;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.89;ReadPosRankSum=3.213;SOR=2.109 GT:AD:DP:GQ:PL 1/1:5,257:262:99:7597,720,0
|
|
|
713 NC_002945.4 712319 . T C 6346.77 . AC=2;AF=1.00;AN=2;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.38;SOR=0.938 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6375,641,0
|
|
|
714 NC_002945.4 726979 . A G 4985.77 . AC=2;AF=1.00;AN=2;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.59;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,163:163:99:5014,486,0
|
|
|
715 NC_002945.4 736081 . T C 6125.77 . AC=2;AF=1.00;AN=2;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.58;SOR=1.345 GT:AD:DP:GQ:PL 1/1:0,194:194:99:6154,576,0
|
|
|
716 NC_002945.4 754315 . G T 6871.77 . AC=2;AF=1.00;AN=2;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.56;SOR=0.948 GT:AD:DP:GQ:PL 1/1:0,156:156:99:6900,472,0
|
|
|
717 NC_002945.4 754317 . C T 6871.77 . AC=2;AF=1.00;AN=2;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.60;SOR=0.980 GT:AD:DP:GQ:PL 1/1:0,156:156:99:6900,472,0
|
|
|
718 NC_002945.4 759943 . C T 7848.77 . AC=2;AF=1.00;AN=2;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.54;SOR=0.873 GT:AD:DP:GQ:PL 1/1:0,275:275:99:7877,812,0
|
|
|
719 NC_002945.4 776314 . A C 5932.77 . AC=2;AF=1.00;AN=2;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.80;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5961,609,0
|
|
|
720 NC_002945.4 804997 . T C 7945.77 . AC=2;AF=1.00;AN=2;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.83;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,242:242:99:7974,721,0
|
|
|
721 NC_002945.4 808092 . T C 10525.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.833;ClippingRankSum=0.000;DP=343;ExcessHet=3.0103;FS=4.209;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.96;ReadPosRankSum=0.319;SOR=1.082 GT:AD:DP:GQ:PL 1/1:1,339:340:99:10554,1001,0
|
|
|
722 NC_002945.4 808601 . T G 11137.77 . AC=2;AF=1.00;AN=2;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.86;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,373:373:99:11166,1112,0
|
|
|
723 NC_002945.4 811737 . C A 8235.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=2.698;ClippingRankSum=0.000;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.30;ReadPosRankSum=-0.582;SOR=0.772 GT:AD:DP:GQ:PL 1/1:2,289:291:99:8264,843,0
|
|
|
724 NC_002945.4 812709 . G A 6893.77 . AC=2;AF=1.00;AN=2;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.79;SOR=0.907 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6922,609,0
|
|
|
725 NC_002945.4 828003 . C G 4476.77 . AC=2;AF=1.00;AN=2;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.53;SOR=2.985 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4505,421,0
|
|
|
726 NC_002945.4 838144 . N . . . . GT ./.
|
|
|
727 NC_002945.4 838145 . N . . . . GT ./.
|
|
|
728 NC_002945.4 838146 . N . . . . GT ./.
|
|
|
729 NC_002945.4 838147 . N . . . . GT ./.
|
|
|
730 NC_002945.4 838148 . N . . . . GT ./.
|
|
|
731 NC_002945.4 838149 . N . . . . GT ./.
|
|
|
732 NC_002945.4 838150 . N . . . . GT ./.
|
|
|
733 NC_002945.4 838151 . N . . . . GT ./.
|
|
|
734 NC_002945.4 838152 . N . . . . GT ./.
|
|
|
735 NC_002945.4 838153 . N . . . . GT ./.
|
|
|
736 NC_002945.4 838154 . N . . . . GT ./.
|
|
|
737 NC_002945.4 838155 . N . . . . GT ./.
|
|
|
738 NC_002945.4 838156 . N . . . . GT ./.
|
|
|
739 NC_002945.4 838157 . N . . . . GT ./.
|
|
|
740 NC_002945.4 838158 . N . . . . GT ./.
|
|
|
741 NC_002945.4 838159 . N . . . . GT ./.
|
|
|
742 NC_002945.4 838160 . N . . . . GT ./.
|
|
|
743 NC_002945.4 838161 . N . . . . GT ./.
|
|
|
744 NC_002945.4 838162 . N . . . . GT ./.
|
|
|
745 NC_002945.4 838163 . N . . . . GT ./.
|
|
|
746 NC_002945.4 838164 . N . . . . GT ./.
|
|
|
747 NC_002945.4 838165 . N . . . . GT ./.
|
|
|
748 NC_002945.4 838166 . N . . . . GT ./.
|
|
|
749 NC_002945.4 838167 . N . . . . GT ./.
|
|
|
750 NC_002945.4 838168 . N . . . . GT ./.
|
|
|
751 NC_002945.4 838169 . N . . . . GT ./.
|
|
|
752 NC_002945.4 838170 . N . . . . GT ./.
|
|
|
753 NC_002945.4 838171 . N . . . . GT ./.
|
|
|
754 NC_002945.4 838172 . N . . . . GT ./.
|
|
|
755 NC_002945.4 838173 . N . . . . GT ./.
|
|
|
756 NC_002945.4 838174 . N . . . . GT ./.
|
|
|
757 NC_002945.4 838175 . N . . . . GT ./.
|
|
|
758 NC_002945.4 838176 . N . . . . GT ./.
|
|
|
759 NC_002945.4 838177 . N . . . . GT ./.
|
|
|
760 NC_002945.4 838178 . N . . . . GT ./.
|
|
|
761 NC_002945.4 838179 . N . . . . GT ./.
|
|
|
762 NC_002945.4 838180 . N . . . . GT ./.
|
|
|
763 NC_002945.4 838181 . N . . . . GT ./.
|
|
|
764 NC_002945.4 838182 . N . . . . GT ./.
|
|
|
765 NC_002945.4 838183 . N . . . . GT ./.
|
|
|
766 NC_002945.4 838184 . N . . . . GT ./.
|
|
|
767 NC_002945.4 838185 . N . . . . GT ./.
|
|
|
768 NC_002945.4 838186 . N . . . . GT ./.
|
|
|
769 NC_002945.4 838187 . N . . . . GT ./.
|
|
|
770 NC_002945.4 838188 . N . . . . GT ./.
|
|
|
771 NC_002945.4 838189 . N . . . . GT ./.
|
|
|
772 NC_002945.4 838190 . N . . . . GT ./.
|
|
|
773 NC_002945.4 838191 . N . . . . GT ./.
|
|
|
774 NC_002945.4 838192 . N . . . . GT ./.
|
|
|
775 NC_002945.4 838193 . N . . . . GT ./.
|
|
|
776 NC_002945.4 838194 . N . . . . GT ./.
|
|
|
777 NC_002945.4 838195 . N . . . . GT ./.
|
|
|
778 NC_002945.4 838196 . N . . . . GT ./.
|
|
|
779 NC_002945.4 838197 . N . . . . GT ./.
|
|
|
780 NC_002945.4 838198 . N . . . . GT ./.
|
|
|
781 NC_002945.4 838199 . N . . . . GT ./.
|
|
|
782 NC_002945.4 838200 . N . . . . GT ./.
|
|
|
783 NC_002945.4 838201 . N . . . . GT ./.
|
|
|
784 NC_002945.4 838202 . N . . . . GT ./.
|
|
|
785 NC_002945.4 838203 . N . . . . GT ./.
|
|
|
786 NC_002945.4 838204 . N . . . . GT ./.
|
|
|
787 NC_002945.4 838205 . N . . . . GT ./.
|
|
|
788 NC_002945.4 838206 . N . . . . GT ./.
|
|
|
789 NC_002945.4 838207 . N . . . . GT ./.
|
|
|
790 NC_002945.4 838208 . N . . . . GT ./.
|
|
|
791 NC_002945.4 838209 . N . . . . GT ./.
|
|
|
792 NC_002945.4 838210 . N . . . . GT ./.
|
|
|
793 NC_002945.4 838211 . N . . . . GT ./.
|
|
|
794 NC_002945.4 838212 . N . . . . GT ./.
|
|
|
795 NC_002945.4 838213 . N . . . . GT ./.
|
|
|
796 NC_002945.4 838996 . N . . . . GT ./.
|
|
|
797 NC_002945.4 838997 . N . . . . GT ./.
|
|
|
798 NC_002945.4 838998 . N . . . . GT ./.
|
|
|
799 NC_002945.4 838999 . N . . . . GT ./.
|
|
|
800 NC_002945.4 839000 . N . . . . GT ./.
|
|
|
801 NC_002945.4 839001 . N . . . . GT ./.
|
|
|
802 NC_002945.4 839002 . N . . . . GT ./.
|
|
|
803 NC_002945.4 839003 . N . . . . GT ./.
|
|
|
804 NC_002945.4 839004 . N . . . . GT ./.
|
|
|
805 NC_002945.4 839005 . N . . . . GT ./.
|
|
|
806 NC_002945.4 839006 . N . . . . GT ./.
|
|
|
807 NC_002945.4 839007 . N . . . . GT ./.
|
|
|
808 NC_002945.4 839008 . N . . . . GT ./.
|
|
|
809 NC_002945.4 839009 . N . . . . GT ./.
|
|
|
810 NC_002945.4 839010 . N . . . . GT ./.
|
|
|
811 NC_002945.4 839011 . N . . . . GT ./.
|
|
|
812 NC_002945.4 839012 . N . . . . GT ./.
|
|
|
813 NC_002945.4 839013 . N . . . . GT ./.
|
|
|
814 NC_002945.4 839014 . N . . . . GT ./.
|
|
|
815 NC_002945.4 839015 . N . . . . GT ./.
|
|
|
816 NC_002945.4 839016 . N . . . . GT ./.
|
|
|
817 NC_002945.4 839017 . N . . . . GT ./.
|
|
|
818 NC_002945.4 839018 . N . . . . GT ./.
|
|
|
819 NC_002945.4 839019 . N . . . . GT ./.
|
|
|
820 NC_002945.4 839020 . N . . . . GT ./.
|
|
|
821 NC_002945.4 839021 . N . . . . GT ./.
|
|
|
822 NC_002945.4 839022 . N . . . . GT ./.
|
|
|
823 NC_002945.4 839023 . N . . . . GT ./.
|
|
|
824 NC_002945.4 839024 . N . . . . GT ./.
|
|
|
825 NC_002945.4 839025 . N . . . . GT ./.
|
|
|
826 NC_002945.4 839026 . N . . . . GT ./.
|
|
|
827 NC_002945.4 839027 . N . . . . GT ./.
|
|
|
828 NC_002945.4 839028 . N . . . . GT ./.
|
|
|
829 NC_002945.4 839029 . N . . . . GT ./.
|
|
|
830 NC_002945.4 839030 . N . . . . GT ./.
|
|
|
831 NC_002945.4 839031 . N . . . . GT ./.
|
|
|
832 NC_002945.4 839032 . N . . . . GT ./.
|
|
|
833 NC_002945.4 839033 . N . . . . GT ./.
|
|
|
834 NC_002945.4 839034 . N . . . . GT ./.
|
|
|
835 NC_002945.4 839035 . N . . . . GT ./.
|
|
|
836 NC_002945.4 839036 . N . . . . GT ./.
|
|
|
837 NC_002945.4 839037 . N . . . . GT ./.
|
|
|
838 NC_002945.4 839038 . N . . . . GT ./.
|
|
|
839 NC_002945.4 839039 . N . . . . GT ./.
|
|
|
840 NC_002945.4 839040 . N . . . . GT ./.
|
|
|
841 NC_002945.4 839041 . N . . . . GT ./.
|
|
|
842 NC_002945.4 839042 . N . . . . GT ./.
|
|
|
843 NC_002945.4 839043 . N . . . . GT ./.
|
|
|
844 NC_002945.4 839044 . N . . . . GT ./.
|
|
|
845 NC_002945.4 839045 . N . . . . GT ./.
|
|
|
846 NC_002945.4 839046 . N . . . . GT ./.
|
|
|
847 NC_002945.4 839047 . N . . . . GT ./.
|
|
|
848 NC_002945.4 839048 . N . . . . GT ./.
|
|
|
849 NC_002945.4 839049 . N . . . . GT ./.
|
|
|
850 NC_002945.4 839050 . N . . . . GT ./.
|
|
|
851 NC_002945.4 839051 . N . . . . GT ./.
|
|
|
852 NC_002945.4 839052 . N . . . . GT ./.
|
|
|
853 NC_002945.4 839053 . N . . . . GT ./.
|
|
|
854 NC_002945.4 839054 . N . . . . GT ./.
|
|
|
855 NC_002945.4 839055 . N . . . . GT ./.
|
|
|
856 NC_002945.4 839056 . N . . . . GT ./.
|
|
|
857 NC_002945.4 839057 . N . . . . GT ./.
|
|
|
858 NC_002945.4 839058 . N . . . . GT ./.
|
|
|
859 NC_002945.4 839059 . N . . . . GT ./.
|
|
|
860 NC_002945.4 839060 . N . . . . GT ./.
|
|
|
861 NC_002945.4 839061 . N . . . . GT ./.
|
|
|
862 NC_002945.4 839062 . N . . . . GT ./.
|
|
|
863 NC_002945.4 839063 . N . . . . GT ./.
|
|
|
864 NC_002945.4 839064 . N . . . . GT ./.
|
|
|
865 NC_002945.4 839065 . N . . . . GT ./.
|
|
|
866 NC_002945.4 839066 . N . . . . GT ./.
|
|
|
867 NC_002945.4 839067 . N . . . . GT ./.
|
|
|
868 NC_002945.4 839068 . N . . . . GT ./.
|
|
|
869 NC_002945.4 839069 . N . . . . GT ./.
|
|
|
870 NC_002945.4 839070 . N . . . . GT ./.
|
|
|
871 NC_002945.4 839071 . N . . . . GT ./.
|
|
|
872 NC_002945.4 839072 . N . . . . GT ./.
|
|
|
873 NC_002945.4 839073 . N . . . . GT ./.
|
|
|
874 NC_002945.4 839074 . N . . . . GT ./.
|
|
|
875 NC_002945.4 839075 . N . . . . GT ./.
|
|
|
876 NC_002945.4 839076 . N . . . . GT ./.
|
|
|
877 NC_002945.4 839077 . N . . . . GT ./.
|
|
|
878 NC_002945.4 839078 . N . . . . GT ./.
|
|
|
879 NC_002945.4 839079 . N . . . . GT ./.
|
|
|
880 NC_002945.4 839080 . N . . . . GT ./.
|
|
|
881 NC_002945.4 839081 . N . . . . GT ./.
|
|
|
882 NC_002945.4 839082 . N . . . . GT ./.
|
|
|
883 NC_002945.4 839083 . N . . . . GT ./.
|
|
|
884 NC_002945.4 839084 . N . . . . GT ./.
|
|
|
885 NC_002945.4 839085 . N . . . . GT ./.
|
|
|
886 NC_002945.4 839086 . N . . . . GT ./.
|
|
|
887 NC_002945.4 839087 . N . . . . GT ./.
|
|
|
888 NC_002945.4 839088 . N . . . . GT ./.
|
|
|
889 NC_002945.4 839089 . N . . . . GT ./.
|
|
|
890 NC_002945.4 839090 . N . . . . GT ./.
|
|
|
891 NC_002945.4 839091 . N . . . . GT ./.
|
|
|
892 NC_002945.4 839092 . N . . . . GT ./.
|
|
|
893 NC_002945.4 839093 . N . . . . GT ./.
|
|
|
894 NC_002945.4 839094 . N . . . . GT ./.
|
|
|
895 NC_002945.4 839095 . N . . . . GT ./.
|
|
|
896 NC_002945.4 839096 . N . . . . GT ./.
|
|
|
897 NC_002945.4 839097 . N . . . . GT ./.
|
|
|
898 NC_002945.4 839098 . N . . . . GT ./.
|
|
|
899 NC_002945.4 839099 . N . . . . GT ./.
|
|
|
900 NC_002945.4 839100 . N . . . . GT ./.
|
|
|
901 NC_002945.4 839101 . N . . . . GT ./.
|
|
|
902 NC_002945.4 839102 . N . . . . GT ./.
|
|
|
903 NC_002945.4 839103 . N . . . . GT ./.
|
|
|
904 NC_002945.4 839104 . N . . . . GT ./.
|
|
|
905 NC_002945.4 839105 . N . . . . GT ./.
|
|
|
906 NC_002945.4 839106 . N . . . . GT ./.
|
|
|
907 NC_002945.4 839107 . N . . . . GT ./.
|
|
|
908 NC_002945.4 839108 . N . . . . GT ./.
|
|
|
909 NC_002945.4 839109 . N . . . . GT ./.
|
|
|
910 NC_002945.4 839110 . N . . . . GT ./.
|
|
|
911 NC_002945.4 839111 . N . . . . GT ./.
|
|
|
912 NC_002945.4 839112 . N . . . . GT ./.
|
|
|
913 NC_002945.4 839113 . N . . . . GT ./.
|
|
|
914 NC_002945.4 839172 . N . . . . GT ./.
|
|
|
915 NC_002945.4 839173 . N . . . . GT ./.
|
|
|
916 NC_002945.4 839174 . N . . . . GT ./.
|
|
|
917 NC_002945.4 839175 . N . . . . GT ./.
|
|
|
918 NC_002945.4 839176 . N . . . . GT ./.
|
|
|
919 NC_002945.4 839177 . N . . . . GT ./.
|
|
|
920 NC_002945.4 839178 . N . . . . GT ./.
|
|
|
921 NC_002945.4 839179 . N . . . . GT ./.
|
|
|
922 NC_002945.4 839180 . N . . . . GT ./.
|
|
|
923 NC_002945.4 839308 . A G 375.77 . AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.45;SOR=3.258 GT:AD:DP:GQ:PL 1/1:0,10:10:30:404,30,0
|
|
|
924 NC_002945.4 840813 . N . . . . GT ./.
|
|
|
925 NC_002945.4 840814 . N . . . . GT ./.
|
|
|
926 NC_002945.4 840815 . N . . . . GT ./.
|
|
|
927 NC_002945.4 840816 . N . . . . GT ./.
|
|
|
928 NC_002945.4 840817 . N . . . . GT ./.
|
|
|
929 NC_002945.4 840818 . N . . . . GT ./.
|
|
|
930 NC_002945.4 840819 . N . . . . GT ./.
|
|
|
931 NC_002945.4 840820 . N . . . . GT ./.
|
|
|
932 NC_002945.4 840821 . N . . . . GT ./.
|
|
|
933 NC_002945.4 840822 . N . . . . GT ./.
|
|
|
934 NC_002945.4 840823 . N . . . . GT ./.
|
|
|
935 NC_002945.4 840824 . N . . . . GT ./.
|
|
|
936 NC_002945.4 840825 . N . . . . GT ./.
|
|
|
937 NC_002945.4 840826 . N . . . . GT ./.
|
|
|
938 NC_002945.4 840827 . N . . . . GT ./.
|
|
|
939 NC_002945.4 840828 . N . . . . GT ./.
|
|
|
940 NC_002945.4 840829 . N . . . . GT ./.
|
|
|
941 NC_002945.4 840830 . N . . . . GT ./.
|
|
|
942 NC_002945.4 840831 . N . . . . GT ./.
|
|
|
943 NC_002945.4 840832 . N . . . . GT ./.
|
|
|
944 NC_002945.4 840833 . N . . . . GT ./.
|
|
|
945 NC_002945.4 840834 . N . . . . GT ./.
|
|
|
946 NC_002945.4 840835 . N . . . . GT ./.
|
|
|
947 NC_002945.4 840836 . N . . . . GT ./.
|
|
|
948 NC_002945.4 840837 . N . . . . GT ./.
|
|
|
949 NC_002945.4 840838 . N . . . . GT ./.
|
|
|
950 NC_002945.4 840839 . N . . . . GT ./.
|
|
|
951 NC_002945.4 840840 . N . . . . GT ./.
|
|
|
952 NC_002945.4 840841 . N . . . . GT ./.
|
|
|
953 NC_002945.4 840842 . N . . . . GT ./.
|
|
|
954 NC_002945.4 840843 . N . . . . GT ./.
|
|
|
955 NC_002945.4 840844 . N . . . . GT ./.
|
|
|
956 NC_002945.4 840845 . N . . . . GT ./.
|
|
|
957 NC_002945.4 840846 . N . . . . GT ./.
|
|
|
958 NC_002945.4 840847 . N . . . . GT ./.
|
|
|
959 NC_002945.4 840848 . N . . . . GT ./.
|
|
|
960 NC_002945.4 840849 . N . . . . GT ./.
|
|
|
961 NC_002945.4 840850 . N . . . . GT ./.
|
|
|
962 NC_002945.4 840851 . N . . . . GT ./.
|
|
|
963 NC_002945.4 840852 . N . . . . GT ./.
|
|
|
964 NC_002945.4 840853 . N . . . . GT ./.
|
|
|
965 NC_002945.4 840854 . N . . . . GT ./.
|
|
|
966 NC_002945.4 840855 . N . . . . GT ./.
|
|
|
967 NC_002945.4 840856 . N . . . . GT ./.
|
|
|
968 NC_002945.4 840857 . N . . . . GT ./.
|
|
|
969 NC_002945.4 840858 . N . . . . GT ./.
|
|
|
970 NC_002945.4 840859 . N . . . . GT ./.
|
|
|
971 NC_002945.4 840860 . N . . . . GT ./.
|
|
|
972 NC_002945.4 840861 . N . . . . GT ./.
|
|
|
973 NC_002945.4 840862 . N . . . . GT ./.
|
|
|
974 NC_002945.4 840863 . N . . . . GT ./.
|
|
|
975 NC_002945.4 840864 . N . . . . GT ./.
|
|
|
976 NC_002945.4 840865 . N . . . . GT ./.
|
|
|
977 NC_002945.4 840866 . N . . . . GT ./.
|
|
|
978 NC_002945.4 840867 . N . . . . GT ./.
|
|
|
979 NC_002945.4 840868 . N . . . . GT ./.
|
|
|
980 NC_002945.4 840869 . N . . . . GT ./.
|
|
|
981 NC_002945.4 840870 . N . . . . GT ./.
|
|
|
982 NC_002945.4 840871 . N . . . . GT ./.
|
|
|
983 NC_002945.4 840872 . N . . . . GT ./.
|
|
|
984 NC_002945.4 840873 . N . . . . GT ./.
|
|
|
985 NC_002945.4 840874 . N . . . . GT ./.
|
|
|
986 NC_002945.4 840875 . N . . . . GT ./.
|
|
|
987 NC_002945.4 840876 . N . . . . GT ./.
|
|
|
988 NC_002945.4 840877 . N . . . . GT ./.
|
|
|
989 NC_002945.4 840878 . N . . . . GT ./.
|
|
|
990 NC_002945.4 840879 . N . . . . GT ./.
|
|
|
991 NC_002945.4 840880 . N . . . . GT ./.
|
|
|
992 NC_002945.4 840881 . N . . . . GT ./.
|
|
|
993 NC_002945.4 840882 . N . . . . GT ./.
|
|
|
994 NC_002945.4 840883 . N . . . . GT ./.
|
|
|
995 NC_002945.4 840884 . N . . . . GT ./.
|
|
|
996 NC_002945.4 840885 . N . . . . GT ./.
|
|
|
997 NC_002945.4 840886 . N . . . . GT ./.
|
|
|
998 NC_002945.4 840887 . N . . . . GT ./.
|
|
|
999 NC_002945.4 840888 . N . . . . GT ./.
|
|
|
1000 NC_002945.4 840889 . N . . . . GT ./.
|
|
|
1001 NC_002945.4 840890 . N . . . . GT ./.
|
|
|
1002 NC_002945.4 840891 . N . . . . GT ./.
|
|
|
1003 NC_002945.4 840892 . N . . . . GT ./.
|
|
|
1004 NC_002945.4 840893 . N . . . . GT ./.
|
|
|
1005 NC_002945.4 840894 . N . . . . GT ./.
|
|
|
1006 NC_002945.4 840895 . N . . . . GT ./.
|
|
|
1007 NC_002945.4 840896 . N . . . . GT ./.
|
|
|
1008 NC_002945.4 840897 . N . . . . GT ./.
|
|
|
1009 NC_002945.4 840898 . N . . . . GT ./.
|
|
|
1010 NC_002945.4 840899 . N . . . . GT ./.
|
|
|
1011 NC_002945.4 840900 . N . . . . GT ./.
|
|
|
1012 NC_002945.4 840901 . N . . . . GT ./.
|
|
|
1013 NC_002945.4 840902 . N . . . . GT ./.
|
|
|
1014 NC_002945.4 840903 . N . . . . GT ./.
|
|
|
1015 NC_002945.4 840904 . N . . . . GT ./.
|
|
|
1016 NC_002945.4 840905 . N . . . . GT ./.
|
|
|
1017 NC_002945.4 840906 . N . . . . GT ./.
|
|
|
1018 NC_002945.4 840907 . N . . . . GT ./.
|
|
|
1019 NC_002945.4 840908 . N . . . . GT ./.
|
|
|
1020 NC_002945.4 840909 . N . . . . GT ./.
|
|
|
1021 NC_002945.4 840910 . N . . . . GT ./.
|
|
|
1022 NC_002945.4 840911 . N . . . . GT ./.
|
|
|
1023 NC_002945.4 840912 . N . . . . GT ./.
|
|
|
1024 NC_002945.4 840913 . N . . . . GT ./.
|
|
|
1025 NC_002945.4 840914 . N . . . . GT ./.
|
|
|
1026 NC_002945.4 840915 . N . . . . GT ./.
|
|
|
1027 NC_002945.4 840916 . N . . . . GT ./.
|
|
|
1028 NC_002945.4 840917 . N . . . . GT ./.
|
|
|
1029 NC_002945.4 840918 . N . . . . GT ./.
|
|
|
1030 NC_002945.4 840919 . N . . . . GT ./.
|
|
|
1031 NC_002945.4 840920 . N . . . . GT ./.
|
|
|
1032 NC_002945.4 840921 . N . . . . GT ./.
|
|
|
1033 NC_002945.4 840922 . N . . . . GT ./.
|
|
|
1034 NC_002945.4 840923 . N . . . . GT ./.
|
|
|
1035 NC_002945.4 840924 . N . . . . GT ./.
|
|
|
1036 NC_002945.4 840925 . N . . . . GT ./.
|
|
|
1037 NC_002945.4 840926 . N . . . . GT ./.
|
|
|
1038 NC_002945.4 840927 . N . . . . GT ./.
|
|
|
1039 NC_002945.4 840928 . N . . . . GT ./.
|
|
|
1040 NC_002945.4 840929 . N . . . . GT ./.
|
|
|
1041 NC_002945.4 840930 . N . . . . GT ./.
|
|
|
1042 NC_002945.4 840931 . N . . . . GT ./.
|
|
|
1043 NC_002945.4 840932 . N . . . . GT ./.
|
|
|
1044 NC_002945.4 840933 . N . . . . GT ./.
|
|
|
1045 NC_002945.4 840934 . N . . . . GT ./.
|
|
|
1046 NC_002945.4 840935 . N . . . . GT ./.
|
|
|
1047 NC_002945.4 840936 . N . . . . GT ./.
|
|
|
1048 NC_002945.4 840937 . N . . . . GT ./.
|
|
|
1049 NC_002945.4 840938 . N . . . . GT ./.
|
|
|
1050 NC_002945.4 840939 . N . . . . GT ./.
|
|
|
1051 NC_002945.4 840940 . N . . . . GT ./.
|
|
|
1052 NC_002945.4 840941 . N . . . . GT ./.
|
|
|
1053 NC_002945.4 840942 . N . . . . GT ./.
|
|
|
1054 NC_002945.4 840943 . N . . . . GT ./.
|
|
|
1055 NC_002945.4 840944 . N . . . . GT ./.
|
|
|
1056 NC_002945.4 840945 . N . . . . GT ./.
|
|
|
1057 NC_002945.4 840946 . N . . . . GT ./.
|
|
|
1058 NC_002945.4 840947 . N . . . . GT ./.
|
|
|
1059 NC_002945.4 840948 . N . . . . GT ./.
|
|
|
1060 NC_002945.4 840949 . N . . . . GT ./.
|
|
|
1061 NC_002945.4 840950 . N . . . . GT ./.
|
|
|
1062 NC_002945.4 840951 . N . . . . GT ./.
|
|
|
1063 NC_002945.4 840952 . N . . . . GT ./.
|
|
|
1064 NC_002945.4 840953 . N . . . . GT ./.
|
|
|
1065 NC_002945.4 840954 . N . . . . GT ./.
|
|
|
1066 NC_002945.4 840955 . N . . . . GT ./.
|
|
|
1067 NC_002945.4 840956 . N . . . . GT ./.
|
|
|
1068 NC_002945.4 840957 . N . . . . GT ./.
|
|
|
1069 NC_002945.4 840958 . N . . . . GT ./.
|
|
|
1070 NC_002945.4 840959 . N . . . . GT ./.
|
|
|
1071 NC_002945.4 840960 . N . . . . GT ./.
|
|
|
1072 NC_002945.4 840961 . N . . . . GT ./.
|
|
|
1073 NC_002945.4 840962 . N . . . . GT ./.
|
|
|
1074 NC_002945.4 840963 . N . . . . GT ./.
|
|
|
1075 NC_002945.4 840964 . N . . . . GT ./.
|
|
|
1076 NC_002945.4 840965 . N . . . . GT ./.
|
|
|
1077 NC_002945.4 840966 . N . . . . GT ./.
|
|
|
1078 NC_002945.4 840967 . N . . . . GT ./.
|
|
|
1079 NC_002945.4 840968 . N . . . . GT ./.
|
|
|
1080 NC_002945.4 840969 . N . . . . GT ./.
|
|
|
1081 NC_002945.4 840970 . N . . . . GT ./.
|
|
|
1082 NC_002945.4 840971 . N . . . . GT ./.
|
|
|
1083 NC_002945.4 840972 . N . . . . GT ./.
|
|
|
1084 NC_002945.4 840973 . N . . . . GT ./.
|
|
|
1085 NC_002945.4 840974 . N . . . . GT ./.
|
|
|
1086 NC_002945.4 840975 . N . . . . GT ./.
|
|
|
1087 NC_002945.4 840976 . N . . . . GT ./.
|
|
|
1088 NC_002945.4 840977 . N . . . . GT ./.
|
|
|
1089 NC_002945.4 840978 . N . . . . GT ./.
|
|
|
1090 NC_002945.4 840979 . N . . . . GT ./.
|
|
|
1091 NC_002945.4 840980 . N . . . . GT ./.
|
|
|
1092 NC_002945.4 840981 . N . . . . GT ./.
|
|
|
1093 NC_002945.4 840982 . N . . . . GT ./.
|
|
|
1094 NC_002945.4 840983 . N . . . . GT ./.
|
|
|
1095 NC_002945.4 840984 . N . . . . GT ./.
|
|
|
1096 NC_002945.4 840985 . N . . . . GT ./.
|
|
|
1097 NC_002945.4 840986 . N . . . . GT ./.
|
|
|
1098 NC_002945.4 840987 . N . . . . GT ./.
|
|
|
1099 NC_002945.4 840988 . N . . . . GT ./.
|
|
|
1100 NC_002945.4 840989 . N . . . . GT ./.
|
|
|
1101 NC_002945.4 840990 . N . . . . GT ./.
|
|
|
1102 NC_002945.4 840991 . N . . . . GT ./.
|
|
|
1103 NC_002945.4 840992 . N . . . . GT ./.
|
|
|
1104 NC_002945.4 840993 . N . . . . GT ./.
|
|
|
1105 NC_002945.4 840994 . N . . . . GT ./.
|
|
|
1106 NC_002945.4 840995 . N . . . . GT ./.
|
|
|
1107 NC_002945.4 840996 . N . . . . GT ./.
|
|
|
1108 NC_002945.4 840997 . N . . . . GT ./.
|
|
|
1109 NC_002945.4 840998 . N . . . . GT ./.
|
|
|
1110 NC_002945.4 840999 . N . . . . GT ./.
|
|
|
1111 NC_002945.4 841000 . N . . . . GT ./.
|
|
|
1112 NC_002945.4 841001 . N . . . . GT ./.
|
|
|
1113 NC_002945.4 841002 . N . . . . GT ./.
|
|
|
1114 NC_002945.4 841003 . N . . . . GT ./.
|
|
|
1115 NC_002945.4 841004 . N . . . . GT ./.
|
|
|
1116 NC_002945.4 841005 . N . . . . GT ./.
|
|
|
1117 NC_002945.4 841006 . N . . . . GT ./.
|
|
|
1118 NC_002945.4 841007 . N . . . . GT ./.
|
|
|
1119 NC_002945.4 841008 . N . . . . GT ./.
|
|
|
1120 NC_002945.4 841009 . N . . . . GT ./.
|
|
|
1121 NC_002945.4 841010 . N . . . . GT ./.
|
|
|
1122 NC_002945.4 841011 . N . . . . GT ./.
|
|
|
1123 NC_002945.4 841012 . N . . . . GT ./.
|
|
|
1124 NC_002945.4 841013 . N . . . . GT ./.
|
|
|
1125 NC_002945.4 841014 . N . . . . GT ./.
|
|
|
1126 NC_002945.4 841015 . N . . . . GT ./.
|
|
|
1127 NC_002945.4 841016 . N . . . . GT ./.
|
|
|
1128 NC_002945.4 841017 . N . . . . GT ./.
|
|
|
1129 NC_002945.4 841018 . N . . . . GT ./.
|
|
|
1130 NC_002945.4 841019 . N . . . . GT ./.
|
|
|
1131 NC_002945.4 841020 . N . . . . GT ./.
|
|
|
1132 NC_002945.4 841021 . N . . . . GT ./.
|
|
|
1133 NC_002945.4 841022 . N . . . . GT ./.
|
|
|
1134 NC_002945.4 841023 . N . . . . GT ./.
|
|
|
1135 NC_002945.4 841024 . N . . . . GT ./.
|
|
|
1136 NC_002945.4 841025 . N . . . . GT ./.
|
|
|
1137 NC_002945.4 841026 . N . . . . GT ./.
|
|
|
1138 NC_002945.4 841027 . N . . . . GT ./.
|
|
|
1139 NC_002945.4 841028 . N . . . . GT ./.
|
|
|
1140 NC_002945.4 841029 . N . . . . GT ./.
|
|
|
1141 NC_002945.4 841030 . N . . . . GT ./.
|
|
|
1142 NC_002945.4 841031 . N . . . . GT ./.
|
|
|
1143 NC_002945.4 841032 . N . . . . GT ./.
|
|
|
1144 NC_002945.4 841033 . N . . . . GT ./.
|
|
|
1145 NC_002945.4 841034 . N . . . . GT ./.
|
|
|
1146 NC_002945.4 841035 . N . . . . GT ./.
|
|
|
1147 NC_002945.4 841036 . N . . . . GT ./.
|
|
|
1148 NC_002945.4 841037 . N . . . . GT ./.
|
|
|
1149 NC_002945.4 841038 . N . . . . GT ./.
|
|
|
1150 NC_002945.4 841039 . N . . . . GT ./.
|
|
|
1151 NC_002945.4 841040 . N . . . . GT ./.
|
|
|
1152 NC_002945.4 841041 . N . . . . GT ./.
|
|
|
1153 NC_002945.4 841042 . N . . . . GT ./.
|
|
|
1154 NC_002945.4 841043 . N . . . . GT ./.
|
|
|
1155 NC_002945.4 841044 . N . . . . GT ./.
|
|
|
1156 NC_002945.4 841045 . N . . . . GT ./.
|
|
|
1157 NC_002945.4 841046 . N . . . . GT ./.
|
|
|
1158 NC_002945.4 841047 . N . . . . GT ./.
|
|
|
1159 NC_002945.4 841048 . N . . . . GT ./.
|
|
|
1160 NC_002945.4 841049 . N . . . . GT ./.
|
|
|
1161 NC_002945.4 841050 . N . . . . GT ./.
|
|
|
1162 NC_002945.4 841051 . N . . . . GT ./.
|
|
|
1163 NC_002945.4 841052 . N . . . . GT ./.
|
|
|
1164 NC_002945.4 841053 . N . . . . GT ./.
|
|
|
1165 NC_002945.4 841054 . N . . . . GT ./.
|
|
|
1166 NC_002945.4 841055 . N . . . . GT ./.
|
|
|
1167 NC_002945.4 841056 . N . . . . GT ./.
|
|
|
1168 NC_002945.4 841057 . N . . . . GT ./.
|
|
|
1169 NC_002945.4 841058 . N . . . . GT ./.
|
|
|
1170 NC_002945.4 841059 . N . . . . GT ./.
|
|
|
1171 NC_002945.4 841060 . N . . . . GT ./.
|
|
|
1172 NC_002945.4 841061 . N . . . . GT ./.
|
|
|
1173 NC_002945.4 841062 . N . . . . GT ./.
|
|
|
1174 NC_002945.4 841063 . N . . . . GT ./.
|
|
|
1175 NC_002945.4 841064 . N . . . . GT ./.
|
|
|
1176 NC_002945.4 841065 . N . . . . GT ./.
|
|
|
1177 NC_002945.4 841066 . N . . . . GT ./.
|
|
|
1178 NC_002945.4 841067 . N . . . . GT ./.
|
|
|
1179 NC_002945.4 841068 . N . . . . GT ./.
|
|
|
1180 NC_002945.4 841069 . N . . . . GT ./.
|
|
|
1181 NC_002945.4 841070 . N . . . . GT ./.
|
|
|
1182 NC_002945.4 841071 . N . . . . GT ./.
|
|
|
1183 NC_002945.4 841072 . N . . . . GT ./.
|
|
|
1184 NC_002945.4 841073 . N . . . . GT ./.
|
|
|
1185 NC_002945.4 841074 . N . . . . GT ./.
|
|
|
1186 NC_002945.4 841075 . N . . . . GT ./.
|
|
|
1187 NC_002945.4 841076 . N . . . . GT ./.
|
|
|
1188 NC_002945.4 841077 . N . . . . GT ./.
|
|
|
1189 NC_002945.4 841078 . N . . . . GT ./.
|
|
|
1190 NC_002945.4 841079 . N . . . . GT ./.
|
|
|
1191 NC_002945.4 841080 . N . . . . GT ./.
|
|
|
1192 NC_002945.4 841081 . N . . . . GT ./.
|
|
|
1193 NC_002945.4 841082 . N . . . . GT ./.
|
|
|
1194 NC_002945.4 841083 . N . . . . GT ./.
|
|
|
1195 NC_002945.4 841084 . N . . . . GT ./.
|
|
|
1196 NC_002945.4 841085 . N . . . . GT ./.
|
|
|
1197 NC_002945.4 841086 . N . . . . GT ./.
|
|
|
1198 NC_002945.4 841087 . N . . . . GT ./.
|
|
|
1199 NC_002945.4 841088 . N . . . . GT ./.
|
|
|
1200 NC_002945.4 841089 . N . . . . GT ./.
|
|
|
1201 NC_002945.4 841090 . N . . . . GT ./.
|
|
|
1202 NC_002945.4 841091 . N . . . . GT ./.
|
|
|
1203 NC_002945.4 841092 . N . . . . GT ./.
|
|
|
1204 NC_002945.4 841093 . N . . . . GT ./.
|
|
|
1205 NC_002945.4 841094 . N . . . . GT ./.
|
|
|
1206 NC_002945.4 841095 . N . . . . GT ./.
|
|
|
1207 NC_002945.4 841096 . N . . . . GT ./.
|
|
|
1208 NC_002945.4 841097 . N . . . . GT ./.
|
|
|
1209 NC_002945.4 841098 . N . . . . GT ./.
|
|
|
1210 NC_002945.4 841099 . N . . . . GT ./.
|
|
|
1211 NC_002945.4 841100 . N . . . . GT ./.
|
|
|
1212 NC_002945.4 841101 . N . . . . GT ./.
|
|
|
1213 NC_002945.4 841102 . N . . . . GT ./.
|
|
|
1214 NC_002945.4 841103 . N . . . . GT ./.
|
|
|
1215 NC_002945.4 841104 . N . . . . GT ./.
|
|
|
1216 NC_002945.4 841105 . N . . . . GT ./.
|
|
|
1217 NC_002945.4 841106 . N . . . . GT ./.
|
|
|
1218 NC_002945.4 841107 . N . . . . GT ./.
|
|
|
1219 NC_002945.4 841108 . N . . . . GT ./.
|
|
|
1220 NC_002945.4 841109 . N . . . . GT ./.
|
|
|
1221 NC_002945.4 841110 . N . . . . GT ./.
|
|
|
1222 NC_002945.4 841111 . N . . . . GT ./.
|
|
|
1223 NC_002945.4 841112 . N . . . . GT ./.
|
|
|
1224 NC_002945.4 841113 . N . . . . GT ./.
|
|
|
1225 NC_002945.4 841114 . N . . . . GT ./.
|
|
|
1226 NC_002945.4 841115 . N . . . . GT ./.
|
|
|
1227 NC_002945.4 841116 . N . . . . GT ./.
|
|
|
1228 NC_002945.4 841117 . N . . . . GT ./.
|
|
|
1229 NC_002945.4 841118 . N . . . . GT ./.
|
|
|
1230 NC_002945.4 841119 . N . . . . GT ./.
|
|
|
1231 NC_002945.4 841120 . N . . . . GT ./.
|
|
|
1232 NC_002945.4 841121 . N . . . . GT ./.
|
|
|
1233 NC_002945.4 841122 . N . . . . GT ./.
|
|
|
1234 NC_002945.4 841123 . N . . . . GT ./.
|
|
|
1235 NC_002945.4 841124 . N . . . . GT ./.
|
|
|
1236 NC_002945.4 841125 . N . . . . GT ./.
|
|
|
1237 NC_002945.4 841126 . N . . . . GT ./.
|
|
|
1238 NC_002945.4 841127 . N . . . . GT ./.
|
|
|
1239 NC_002945.4 841128 . N . . . . GT ./.
|
|
|
1240 NC_002945.4 841129 . N . . . . GT ./.
|
|
|
1241 NC_002945.4 841130 . N . . . . GT ./.
|
|
|
1242 NC_002945.4 841131 . N . . . . GT ./.
|
|
|
1243 NC_002945.4 841132 . N . . . . GT ./.
|
|
|
1244 NC_002945.4 841133 . N . . . . GT ./.
|
|
|
1245 NC_002945.4 841134 . N . . . . GT ./.
|
|
|
1246 NC_002945.4 841135 . N . . . . GT ./.
|
|
|
1247 NC_002945.4 841136 . N . . . . GT ./.
|
|
|
1248 NC_002945.4 841137 . N . . . . GT ./.
|
|
|
1249 NC_002945.4 841138 . N . . . . GT ./.
|
|
|
1250 NC_002945.4 841139 . N . . . . GT ./.
|
|
|
1251 NC_002945.4 841140 . N . . . . GT ./.
|
|
|
1252 NC_002945.4 841141 . N . . . . GT ./.
|
|
|
1253 NC_002945.4 841142 . N . . . . GT ./.
|
|
|
1254 NC_002945.4 841143 . N . . . . GT ./.
|
|
|
1255 NC_002945.4 841144 . N . . . . GT ./.
|
|
|
1256 NC_002945.4 841145 . N . . . . GT ./.
|
|
|
1257 NC_002945.4 841146 . N . . . . GT ./.
|
|
|
1258 NC_002945.4 841147 . N . . . . GT ./.
|
|
|
1259 NC_002945.4 841148 . N . . . . GT ./.
|
|
|
1260 NC_002945.4 841149 . N . . . . GT ./.
|
|
|
1261 NC_002945.4 841150 . N . . . . GT ./.
|
|
|
1262 NC_002945.4 841151 . N . . . . GT ./.
|
|
|
1263 NC_002945.4 841152 . N . . . . GT ./.
|
|
|
1264 NC_002945.4 841153 . N . . . . GT ./.
|
|
|
1265 NC_002945.4 841154 . N . . . . GT ./.
|
|
|
1266 NC_002945.4 841155 . N . . . . GT ./.
|
|
|
1267 NC_002945.4 841156 . N . . . . GT ./.
|
|
|
1268 NC_002945.4 841157 . N . . . . GT ./.
|
|
|
1269 NC_002945.4 841158 . N . . . . GT ./.
|
|
|
1270 NC_002945.4 841159 . N . . . . GT ./.
|
|
|
1271 NC_002945.4 841160 . N . . . . GT ./.
|
|
|
1272 NC_002945.4 841161 . N . . . . GT ./.
|
|
|
1273 NC_002945.4 841162 . N . . . . GT ./.
|
|
|
1274 NC_002945.4 841163 . N . . . . GT ./.
|
|
|
1275 NC_002945.4 841164 . N . . . . GT ./.
|
|
|
1276 NC_002945.4 841165 . N . . . . GT ./.
|
|
|
1277 NC_002945.4 841166 . N . . . . GT ./.
|
|
|
1278 NC_002945.4 841167 . N . . . . GT ./.
|
|
|
1279 NC_002945.4 841168 . N . . . . GT ./.
|
|
|
1280 NC_002945.4 841169 . N . . . . GT ./.
|
|
|
1281 NC_002945.4 841170 . N . . . . GT ./.
|
|
|
1282 NC_002945.4 841171 . N . . . . GT ./.
|
|
|
1283 NC_002945.4 841172 . N . . . . GT ./.
|
|
|
1284 NC_002945.4 841173 . N . . . . GT ./.
|
|
|
1285 NC_002945.4 841174 . N . . . . GT ./.
|
|
|
1286 NC_002945.4 841175 . N . . . . GT ./.
|
|
|
1287 NC_002945.4 841176 . N . . . . GT ./.
|
|
|
1288 NC_002945.4 841177 . N . . . . GT ./.
|
|
|
1289 NC_002945.4 841178 . N . . . . GT ./.
|
|
|
1290 NC_002945.4 841179 . N . . . . GT ./.
|
|
|
1291 NC_002945.4 841180 . N . . . . GT ./.
|
|
|
1292 NC_002945.4 841181 . N . . . . GT ./.
|
|
|
1293 NC_002945.4 841182 . N . . . . GT ./.
|
|
|
1294 NC_002945.4 841183 . N . . . . GT ./.
|
|
|
1295 NC_002945.4 841184 . N . . . . GT ./.
|
|
|
1296 NC_002945.4 841185 . N . . . . GT ./.
|
|
|
1297 NC_002945.4 841186 . N . . . . GT ./.
|
|
|
1298 NC_002945.4 841187 . N . . . . GT ./.
|
|
|
1299 NC_002945.4 841188 . N . . . . GT ./.
|
|
|
1300 NC_002945.4 841189 . N . . . . GT ./.
|
|
|
1301 NC_002945.4 841190 . N . . . . GT ./.
|
|
|
1302 NC_002945.4 841191 . N . . . . GT ./.
|
|
|
1303 NC_002945.4 841192 . N . . . . GT ./.
|
|
|
1304 NC_002945.4 841193 . N . . . . GT ./.
|
|
|
1305 NC_002945.4 841194 . N . . . . GT ./.
|
|
|
1306 NC_002945.4 841195 . N . . . . GT ./.
|
|
|
1307 NC_002945.4 841196 . N . . . . GT ./.
|
|
|
1308 NC_002945.4 841197 . N . . . . GT ./.
|
|
|
1309 NC_002945.4 841198 . N . . . . GT ./.
|
|
|
1310 NC_002945.4 841199 . N . . . . GT ./.
|
|
|
1311 NC_002945.4 841200 . N . . . . GT ./.
|
|
|
1312 NC_002945.4 841201 . N . . . . GT ./.
|
|
|
1313 NC_002945.4 841202 . N . . . . GT ./.
|
|
|
1314 NC_002945.4 841203 . N . . . . GT ./.
|
|
|
1315 NC_002945.4 842360 . N . . . . GT ./.
|
|
|
1316 NC_002945.4 842361 . N . . . . GT ./.
|
|
|
1317 NC_002945.4 842362 . N . . . . GT ./.
|
|
|
1318 NC_002945.4 842363 . N . . . . GT ./.
|
|
|
1319 NC_002945.4 842364 . N . . . . GT ./.
|
|
|
1320 NC_002945.4 842365 . N . . . . GT ./.
|
|
|
1321 NC_002945.4 842366 . N . . . . GT ./.
|
|
|
1322 NC_002945.4 842367 . N . . . . GT ./.
|
|
|
1323 NC_002945.4 842368 . N . . . . GT ./.
|
|
|
1324 NC_002945.4 842369 . N . . . . GT ./.
|
|
|
1325 NC_002945.4 842370 . N . . . . GT ./.
|
|
|
1326 NC_002945.4 842371 . N . . . . GT ./.
|
|
|
1327 NC_002945.4 842372 . N . . . . GT ./.
|
|
|
1328 NC_002945.4 842373 . N . . . . GT ./.
|
|
|
1329 NC_002945.4 842374 . N . . . . GT ./.
|
|
|
1330 NC_002945.4 842375 . N . . . . GT ./.
|
|
|
1331 NC_002945.4 842376 . N . . . . GT ./.
|
|
|
1332 NC_002945.4 842377 . N . . . . GT ./.
|
|
|
1333 NC_002945.4 842378 . N . . . . GT ./.
|
|
|
1334 NC_002945.4 842379 . N . . . . GT ./.
|
|
|
1335 NC_002945.4 842380 . N . . . . GT ./.
|
|
|
1336 NC_002945.4 842381 . N . . . . GT ./.
|
|
|
1337 NC_002945.4 842382 . N . . . . GT ./.
|
|
|
1338 NC_002945.4 842383 . N . . . . GT ./.
|
|
|
1339 NC_002945.4 842384 . N . . . . GT ./.
|
|
|
1340 NC_002945.4 842385 . N . . . . GT ./.
|
|
|
1341 NC_002945.4 855884 . A G 20.80 . AC=1;AF=0.500;AN=2;BaseQRankSum=-5.728;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=180.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.14;ReadPosRankSum=-2.646;SOR=5.205 GT:AD:DP:GQ:PL 0/1:127,27:154:49:49,0,3313
|
|
|
1342 NC_002945.4 865821 . G T 7081.77 . AC=2;AF=1.00;AN=2;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.52;SOR=0.710 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7110,690,0
|
|
|
1343 NC_002945.4 866123 . C T 7447.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.857;ClippingRankSum=0.000;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.44;ReadPosRankSum=1.415;SOR=0.243 GT:AD:DP:GQ:PL 1/1:1,252:253:99:7476,742,0
|
|
|
1344 NC_002945.4 870116 . G T 4189.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=2.021;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.31;ReadPosRankSum=-0.397;SOR=0.290 GT:AD:DP:GQ:PL 1/1:1,147:148:99:4218,431,0
|
|
|
1345 NC_002945.4 905912 . C G 7189.77 . AC=2;AF=1.00;AN=2;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.67;SOR=1.497 GT:AD:DP:GQ:PL 1/1:0,227:227:99:7218,676,0
|
|
|
1346 NC_002945.4 926342 . N . . . . GT ./.
|
|
|
1347 NC_002945.4 926343 . N . . . . GT ./.
|
|
|
1348 NC_002945.4 926344 . N . . . . GT ./.
|
|
|
1349 NC_002945.4 926345 . N . . . . GT ./.
|
|
|
1350 NC_002945.4 926346 . N . . . . GT ./.
|
|
|
1351 NC_002945.4 926347 . N . . . . GT ./.
|
|
|
1352 NC_002945.4 926348 . N . . . . GT ./.
|
|
|
1353 NC_002945.4 926349 . N . . . . GT ./.
|
|
|
1354 NC_002945.4 926350 . N . . . . GT ./.
|
|
|
1355 NC_002945.4 926351 . N . . . . GT ./.
|
|
|
1356 NC_002945.4 926352 . N . . . . GT ./.
|
|
|
1357 NC_002945.4 926572 . N . . . . GT ./.
|
|
|
1358 NC_002945.4 926573 . N . . . . GT ./.
|
|
|
1359 NC_002945.4 926574 . N . . . . GT ./.
|
|
|
1360 NC_002945.4 926575 . N . . . . GT ./.
|
|
|
1361 NC_002945.4 926576 . N . . . . GT ./.
|
|
|
1362 NC_002945.4 926689 . N . . . . GT ./.
|
|
|
1363 NC_002945.4 926690 . N . . . . GT ./.
|
|
|
1364 NC_002945.4 926691 . N . . . . GT ./.
|
|
|
1365 NC_002945.4 926692 . N . . . . GT ./.
|
|
|
1366 NC_002945.4 926693 . N . . . . GT ./.
|
|
|
1367 NC_002945.4 926694 . N . . . . GT ./.
|
|
|
1368 NC_002945.4 926695 . N . . . . GT ./.
|
|
|
1369 NC_002945.4 926696 . N . . . . GT ./.
|
|
|
1370 NC_002945.4 926697 . N . . . . GT ./.
|
|
|
1371 NC_002945.4 926698 . N . . . . GT ./.
|
|
|
1372 NC_002945.4 926699 . N . . . . GT ./.
|
|
|
1373 NC_002945.4 926700 . N . . . . GT ./.
|
|
|
1374 NC_002945.4 926701 . N . . . . GT ./.
|
|
|
1375 NC_002945.4 926702 . N . . . . GT ./.
|
|
|
1376 NC_002945.4 926703 . N . . . . GT ./.
|
|
|
1377 NC_002945.4 926704 . N . . . . GT ./.
|
|
|
1378 NC_002945.4 926705 . N . . . . GT ./.
|
|
|
1379 NC_002945.4 926706 . N . . . . GT ./.
|
|
|
1380 NC_002945.4 926707 . N . . . . GT ./.
|
|
|
1381 NC_002945.4 926708 . N . . . . GT ./.
|
|
|
1382 NC_002945.4 926709 . N . . . . GT ./.
|
|
|
1383 NC_002945.4 926710 . N . . . . GT ./.
|
|
|
1384 NC_002945.4 926711 . N . . . . GT ./.
|
|
|
1385 NC_002945.4 926712 . N . . . . GT ./.
|
|
|
1386 NC_002945.4 926713 . N . . . . GT ./.
|
|
|
1387 NC_002945.4 926714 . N . . . . GT ./.
|
|
|
1388 NC_002945.4 926715 . N . . . . GT ./.
|
|
|
1389 NC_002945.4 926716 . N . . . . GT ./.
|
|
|
1390 NC_002945.4 926717 . N . . . . GT ./.
|
|
|
1391 NC_002945.4 926718 . N . . . . GT ./.
|
|
|
1392 NC_002945.4 926719 . N . . . . GT ./.
|
|
|
1393 NC_002945.4 926720 . N . . . . GT ./.
|
|
|
1394 NC_002945.4 926721 . N . . . . GT ./.
|
|
|
1395 NC_002945.4 926722 . N . . . . GT ./.
|
|
|
1396 NC_002945.4 926723 . N . . . . GT ./.
|
|
|
1397 NC_002945.4 926724 . N . . . . GT ./.
|
|
|
1398 NC_002945.4 926848 . N . . . . GT ./.
|
|
|
1399 NC_002945.4 926849 . N . . . . GT ./.
|
|
|
1400 NC_002945.4 926850 . N . . . . GT ./.
|
|
|
1401 NC_002945.4 926851 . N . . . . GT ./.
|
|
|
1402 NC_002945.4 926852 . N . . . . GT ./.
|
|
|
1403 NC_002945.4 926853 . N . . . . GT ./.
|
|
|
1404 NC_002945.4 926854 . N . . . . GT ./.
|
|
|
1405 NC_002945.4 926855 . N . . . . GT ./.
|
|
|
1406 NC_002945.4 926856 . N . . . . GT ./.
|
|
|
1407 NC_002945.4 926857 . N . . . . GT ./.
|
|
|
1408 NC_002945.4 926858 . N . . . . GT ./.
|
|
|
1409 NC_002945.4 926859 . N . . . . GT ./.
|
|
|
1410 NC_002945.4 926860 . N . . . . GT ./.
|
|
|
1411 NC_002945.4 926861 . N . . . . GT ./.
|
|
|
1412 NC_002945.4 926862 . N . . . . GT ./.
|
|
|
1413 NC_002945.4 926863 . N . . . . GT ./.
|
|
|
1414 NC_002945.4 926864 . N . . . . GT ./.
|
|
|
1415 NC_002945.4 926865 . N . . . . GT ./.
|
|
|
1416 NC_002945.4 926866 . N . . . . GT ./.
|
|
|
1417 NC_002945.4 926867 . N . . . . GT ./.
|
|
|
1418 NC_002945.4 926868 . N . . . . GT ./.
|
|
|
1419 NC_002945.4 926869 . N . . . . GT ./.
|
|
|
1420 NC_002945.4 926870 . N . . . . GT ./.
|
|
|
1421 NC_002945.4 926871 . N . . . . GT ./.
|
|
|
1422 NC_002945.4 926872 . N . . . . GT ./.
|
|
|
1423 NC_002945.4 926873 . N . . . . GT ./.
|
|
|
1424 NC_002945.4 926874 . N . . . . GT ./.
|
|
|
1425 NC_002945.4 926875 . N . . . . GT ./.
|
|
|
1426 NC_002945.4 926876 . N . . . . GT ./.
|
|
|
1427 NC_002945.4 926877 . N . . . . GT ./.
|
|
|
1428 NC_002945.4 926878 . N . . . . GT ./.
|
|
|
1429 NC_002945.4 926879 . N . . . . GT ./.
|
|
|
1430 NC_002945.4 926880 . N . . . . GT ./.
|
|
|
1431 NC_002945.4 926881 . N . . . . GT ./.
|
|
|
1432 NC_002945.4 926882 . N . . . . GT ./.
|
|
|
1433 NC_002945.4 926883 . N . . . . GT ./.
|
|
|
1434 NC_002945.4 926884 . N . . . . GT ./.
|
|
|
1435 NC_002945.4 926885 . N . . . . GT ./.
|
|
|
1436 NC_002945.4 926886 . N . . . . GT ./.
|
|
|
1437 NC_002945.4 926887 . N . . . . GT ./.
|
|
|
1438 NC_002945.4 926888 . N . . . . GT ./.
|
|
|
1439 NC_002945.4 926889 . N . . . . GT ./.
|
|
|
1440 NC_002945.4 926890 . N . . . . GT ./.
|
|
|
1441 NC_002945.4 926891 . N . . . . GT ./.
|
|
|
1442 NC_002945.4 926892 . N . . . . GT ./.
|
|
|
1443 NC_002945.4 926893 . N . . . . GT ./.
|
|
|
1444 NC_002945.4 926894 . N . . . . GT ./.
|
|
|
1445 NC_002945.4 926895 . N . . . . GT ./.
|
|
|
1446 NC_002945.4 926896 . N . . . . GT ./.
|
|
|
1447 NC_002945.4 926897 . N . . . . GT ./.
|
|
|
1448 NC_002945.4 926898 . N . . . . GT ./.
|
|
|
1449 NC_002945.4 926899 . N . . . . GT ./.
|
|
|
1450 NC_002945.4 926900 . N . . . . GT ./.
|
|
|
1451 NC_002945.4 926901 . N . . . . GT ./.
|
|
|
1452 NC_002945.4 926902 . N . . . . GT ./.
|
|
|
1453 NC_002945.4 926903 . N . . . . GT ./.
|
|
|
1454 NC_002945.4 926904 . N . . . . GT ./.
|
|
|
1455 NC_002945.4 926905 . N . . . . GT ./.
|
|
|
1456 NC_002945.4 926906 . N . . . . GT ./.
|
|
|
1457 NC_002945.4 926907 . N . . . . GT ./.
|
|
|
1458 NC_002945.4 926908 . N . . . . GT ./.
|
|
|
1459 NC_002945.4 926909 . N . . . . GT ./.
|
|
|
1460 NC_002945.4 926910 . N . . . . GT ./.
|
|
|
1461 NC_002945.4 926911 . N . . . . GT ./.
|
|
|
1462 NC_002945.4 926912 . N . . . . GT ./.
|
|
|
1463 NC_002945.4 926913 . N . . . . GT ./.
|
|
|
1464 NC_002945.4 926914 . N . . . . GT ./.
|
|
|
1465 NC_002945.4 926915 . N . . . . GT ./.
|
|
|
1466 NC_002945.4 926916 . N . . . . GT ./.
|
|
|
1467 NC_002945.4 926917 . N . . . . GT ./.
|
|
|
1468 NC_002945.4 926918 . N . . . . GT ./.
|
|
|
1469 NC_002945.4 926919 . N . . . . GT ./.
|
|
|
1470 NC_002945.4 926920 . N . . . . GT ./.
|
|
|
1471 NC_002945.4 926921 . N . . . . GT ./.
|
|
|
1472 NC_002945.4 926922 . N . . . . GT ./.
|
|
|
1473 NC_002945.4 926923 . N . . . . GT ./.
|
|
|
1474 NC_002945.4 926924 . N . . . . GT ./.
|
|
|
1475 NC_002945.4 926925 . N . . . . GT ./.
|
|
|
1476 NC_002945.4 926926 . N . . . . GT ./.
|
|
|
1477 NC_002945.4 926927 . N . . . . GT ./.
|
|
|
1478 NC_002945.4 926928 . N . . . . GT ./.
|
|
|
1479 NC_002945.4 926929 . N . . . . GT ./.
|
|
|
1480 NC_002945.4 927689 . N . . . . GT ./.
|
|
|
1481 NC_002945.4 927690 . N . . . . GT ./.
|
|
|
1482 NC_002945.4 927691 . N . . . . GT ./.
|
|
|
1483 NC_002945.4 927692 . N . . . . GT ./.
|
|
|
1484 NC_002945.4 927693 . N . . . . GT ./.
|
|
|
1485 NC_002945.4 927694 . N . . . . GT ./.
|
|
|
1486 NC_002945.4 927695 . N . . . . GT ./.
|
|
|
1487 NC_002945.4 927696 . N . . . . GT ./.
|
|
|
1488 NC_002945.4 927697 . N . . . . GT ./.
|
|
|
1489 NC_002945.4 927698 . N . . . . GT ./.
|
|
|
1490 NC_002945.4 927699 . N . . . . GT ./.
|
|
|
1491 NC_002945.4 927700 . N . . . . GT ./.
|
|
|
1492 NC_002945.4 927701 . N . . . . GT ./.
|
|
|
1493 NC_002945.4 927702 . N . . . . GT ./.
|
|
|
1494 NC_002945.4 927703 . N . . . . GT ./.
|
|
|
1495 NC_002945.4 927704 . N . . . . GT ./.
|
|
|
1496 NC_002945.4 927705 . N . . . . GT ./.
|
|
|
1497 NC_002945.4 927706 . N . . . . GT ./.
|
|
|
1498 NC_002945.4 927707 . N . . . . GT ./.
|
|
|
1499 NC_002945.4 927708 . N . . . . GT ./.
|
|
|
1500 NC_002945.4 927709 . N . . . . GT ./.
|
|
|
1501 NC_002945.4 927710 . N . . . . GT ./.
|
|
|
1502 NC_002945.4 927711 . N . . . . GT ./.
|
|
|
1503 NC_002945.4 927712 . N . . . . GT ./.
|
|
|
1504 NC_002945.4 927713 . N . . . . GT ./.
|
|
|
1505 NC_002945.4 927714 . N . . . . GT ./.
|
|
|
1506 NC_002945.4 927715 . N . . . . GT ./.
|
|
|
1507 NC_002945.4 927716 . N . . . . GT ./.
|
|
|
1508 NC_002945.4 927717 . N . . . . GT ./.
|
|
|
1509 NC_002945.4 927718 . N . . . . GT ./.
|
|
|
1510 NC_002945.4 927719 . N . . . . GT ./.
|
|
|
1511 NC_002945.4 927720 . N . . . . GT ./.
|
|
|
1512 NC_002945.4 927721 . N . . . . GT ./.
|
|
|
1513 NC_002945.4 927722 . N . . . . GT ./.
|
|
|
1514 NC_002945.4 927723 . N . . . . GT ./.
|
|
|
1515 NC_002945.4 927724 . N . . . . GT ./.
|
|
|
1516 NC_002945.4 927725 . N . . . . GT ./.
|
|
|
1517 NC_002945.4 927726 . N . . . . GT ./.
|
|
|
1518 NC_002945.4 927727 . N . . . . GT ./.
|
|
|
1519 NC_002945.4 927728 . N . . . . GT ./.
|
|
|
1520 NC_002945.4 927729 . N . . . . GT ./.
|
|
|
1521 NC_002945.4 927730 . N . . . . GT ./.
|
|
|
1522 NC_002945.4 927731 . N . . . . GT ./.
|
|
|
1523 NC_002945.4 927732 . N . . . . GT ./.
|
|
|
1524 NC_002945.4 927733 . N . . . . GT ./.
|
|
|
1525 NC_002945.4 927734 . N . . . . GT ./.
|
|
|
1526 NC_002945.4 927735 . N . . . . GT ./.
|
|
|
1527 NC_002945.4 927736 . N . . . . GT ./.
|
|
|
1528 NC_002945.4 927737 . N . . . . GT ./.
|
|
|
1529 NC_002945.4 927738 . N . . . . GT ./.
|
|
|
1530 NC_002945.4 927739 . N . . . . GT ./.
|
|
|
1531 NC_002945.4 927740 . N . . . . GT ./.
|
|
|
1532 NC_002945.4 927741 . N . . . . GT ./.
|
|
|
1533 NC_002945.4 927742 . N . . . . GT ./.
|
|
|
1534 NC_002945.4 927743 . N . . . . GT ./.
|
|
|
1535 NC_002945.4 927744 . N . . . . GT ./.
|
|
|
1536 NC_002945.4 927745 . N . . . . GT ./.
|
|
|
1537 NC_002945.4 927746 . N . . . . GT ./.
|
|
|
1538 NC_002945.4 927747 . N . . . . GT ./.
|
|
|
1539 NC_002945.4 927748 . N . . . . GT ./.
|
|
|
1540 NC_002945.4 927749 . N . . . . GT ./.
|
|
|
1541 NC_002945.4 927750 . N . . . . GT ./.
|
|
|
1542 NC_002945.4 927751 . N . . . . GT ./.
|
|
|
1543 NC_002945.4 927752 . N . . . . GT ./.
|
|
|
1544 NC_002945.4 927753 . N . . . . GT ./.
|
|
|
1545 NC_002945.4 927754 . N . . . . GT ./.
|
|
|
1546 NC_002945.4 927755 . N . . . . GT ./.
|
|
|
1547 NC_002945.4 927756 . N . . . . GT ./.
|
|
|
1548 NC_002945.4 927757 . N . . . . GT ./.
|
|
|
1549 NC_002945.4 927758 . N . . . . GT ./.
|
|
|
1550 NC_002945.4 927759 . N . . . . GT ./.
|
|
|
1551 NC_002945.4 928976 . G A 1961.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=5.393;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=0.963;QD=13.35;ReadPosRankSum=-7.884;SOR=1.170 GT:AD:DP:GQ:PL 0/1:68,79:147:99:1990,0,4143
|
|
|
1552 NC_002945.4 928982 . G A 1892.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=7.758;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=0.339;QD=25.24;ReadPosRankSum=-2.745;SOR=2.245 GT:AD:DP:GQ:PL 0/1:73,2:75:99:1921,0,4143
|
|
|
1553 NC_002945.4 941068 . A C 8058.77 . AC=2;AF=1.00;AN=2;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.11;SOR=1.375 GT:AD:DP:GQ:PL 1/1:0,259:259:99:8087,772,0
|
|
|
1554 NC_002945.4 943719 . G A 8250.77 . AC=2;AF=1.00;AN=2;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.59;SOR=0.937 GT:AD:DP:GQ:PL 1/1:0,299:299:99:8279,889,0
|
|
|
1555 NC_002945.4 946102 . G T 8300.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=3.231;ClippingRankSum=0.000;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.61;ReadPosRankSum=3.137;SOR=0.530 GT:AD:DP:GQ:PL 1/1:3,309:312:99:8329,890,0
|
|
|
1556 NC_002945.4 967989 . T C 9648.77 . AC=2;AF=1.00;AN=2;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.51;SOR=0.975 GT:AD:DP:GQ:PL 1/1:0,327:327:99:9677,977,0
|
|
|
1557 NC_002945.4 970113 . N . . . . GT ./.
|
|
|
1558 NC_002945.4 970114 . N . . . . GT ./.
|
|
|
1559 NC_002945.4 970115 . N . . . . GT ./.
|
|
|
1560 NC_002945.4 970116 . N . . . . GT ./.
|
|
|
1561 NC_002945.4 970117 . N . . . . GT ./.
|
|
|
1562 NC_002945.4 970118 . N . . . . GT ./.
|
|
|
1563 NC_002945.4 970119 . N . . . . GT ./.
|
|
|
1564 NC_002945.4 970120 . N . . . . GT ./.
|
|
|
1565 NC_002945.4 970121 . N . . . . GT ./.
|
|
|
1566 NC_002945.4 970122 . N . . . . GT ./.
|
|
|
1567 NC_002945.4 970123 . N . . . . GT ./.
|
|
|
1568 NC_002945.4 970124 . N . . . . GT ./.
|
|
|
1569 NC_002945.4 970125 . N . . . . GT ./.
|
|
|
1570 NC_002945.4 970126 . N . . . . GT ./.
|
|
|
1571 NC_002945.4 970127 . N . . . . GT ./.
|
|
|
1572 NC_002945.4 970128 . N . . . . GT ./.
|
|
|
1573 NC_002945.4 970129 . N . . . . GT ./.
|
|
|
1574 NC_002945.4 970130 . N . . . . GT ./.
|
|
|
1575 NC_002945.4 970131 . N . . . . GT ./.
|
|
|
1576 NC_002945.4 970132 . N . . . . GT ./.
|
|
|
1577 NC_002945.4 970133 . N . . . . GT ./.
|
|
|
1578 NC_002945.4 970134 . N . . . . GT ./.
|
|
|
1579 NC_002945.4 970135 . N . . . . GT ./.
|
|
|
1580 NC_002945.4 970136 . N . . . . GT ./.
|
|
|
1581 NC_002945.4 970137 . N . . . . GT ./.
|
|
|
1582 NC_002945.4 970138 . N . . . . GT ./.
|
|
|
1583 NC_002945.4 970139 . N . . . . GT ./.
|
|
|
1584 NC_002945.4 970140 . N . . . . GT ./.
|
|
|
1585 NC_002945.4 970141 . N . . . . GT ./.
|
|
|
1586 NC_002945.4 970142 . N . . . . GT ./.
|
|
|
1587 NC_002945.4 970143 . N . . . . GT ./.
|
|
|
1588 NC_002945.4 970144 . N . . . . GT ./.
|
|
|
1589 NC_002945.4 970145 . N . . . . GT ./.
|
|
|
1590 NC_002945.4 970146 . N . . . . GT ./.
|
|
|
1591 NC_002945.4 970147 . N . . . . GT ./.
|
|
|
1592 NC_002945.4 970148 . N . . . . GT ./.
|
|
|
1593 NC_002945.4 970149 . N . . . . GT ./.
|
|
|
1594 NC_002945.4 970150 . N . . . . GT ./.
|
|
|
1595 NC_002945.4 970151 . N . . . . GT ./.
|
|
|
1596 NC_002945.4 970152 . N . . . . GT ./.
|
|
|
1597 NC_002945.4 970153 . N . . . . GT ./.
|
|
|
1598 NC_002945.4 970154 . N . . . . GT ./.
|
|
|
1599 NC_002945.4 970155 . N . . . . GT ./.
|
|
|
1600 NC_002945.4 970156 . N . . . . GT ./.
|
|
|
1601 NC_002945.4 970157 . N . . . . GT ./.
|
|
|
1602 NC_002945.4 970158 . N . . . . GT ./.
|
|
|
1603 NC_002945.4 970159 . N . . . . GT ./.
|
|
|
1604 NC_002945.4 970160 . N . . . . GT ./.
|
|
|
1605 NC_002945.4 970161 . N . . . . GT ./.
|
|
|
1606 NC_002945.4 970162 . N . . . . GT ./.
|
|
|
1607 NC_002945.4 970163 . N . . . . GT ./.
|
|
|
1608 NC_002945.4 970164 . N . . . . GT ./.
|
|
|
1609 NC_002945.4 970165 . N . . . . GT ./.
|
|
|
1610 NC_002945.4 970166 . N . . . . GT ./.
|
|
|
1611 NC_002945.4 970167 . N . . . . GT ./.
|
|
|
1612 NC_002945.4 970168 . N . . . . GT ./.
|
|
|
1613 NC_002945.4 970169 . N . . . . GT ./.
|
|
|
1614 NC_002945.4 970170 . N . . . . GT ./.
|
|
|
1615 NC_002945.4 970171 . N . . . . GT ./.
|
|
|
1616 NC_002945.4 970172 . N . . . . GT ./.
|
|
|
1617 NC_002945.4 970173 . N . . . . GT ./.
|
|
|
1618 NC_002945.4 970174 . N . . . . GT ./.
|
|
|
1619 NC_002945.4 970175 . N . . . . GT ./.
|
|
|
1620 NC_002945.4 970176 . N . . . . GT ./.
|
|
|
1621 NC_002945.4 970177 . N . . . . GT ./.
|
|
|
1622 NC_002945.4 970178 . N . . . . GT ./.
|
|
|
1623 NC_002945.4 970179 . N . . . . GT ./.
|
|
|
1624 NC_002945.4 970180 . N . . . . GT ./.
|
|
|
1625 NC_002945.4 970181 . N . . . . GT ./.
|
|
|
1626 NC_002945.4 970182 . N . . . . GT ./.
|
|
|
1627 NC_002945.4 970183 . N . . . . GT ./.
|
|
|
1628 NC_002945.4 970184 . N . . . . GT ./.
|
|
|
1629 NC_002945.4 970185 . N . . . . GT ./.
|
|
|
1630 NC_002945.4 970186 . N . . . . GT ./.
|
|
|
1631 NC_002945.4 970187 . N . . . . GT ./.
|
|
|
1632 NC_002945.4 970188 . N . . . . GT ./.
|
|
|
1633 NC_002945.4 976327 . C T 6121.77 . AC=2;AF=1.00;AN=2;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.22;SOR=2.621 GT:AD:DP:GQ:PL 1/1:0,190:190:99:6150,563,0
|
|
|
1634 NC_002945.4 982007 . G C 7198.77 . AC=2;AF=1.00;AN=2;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.38;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,245:245:99:7227,728,0
|
|
|
1635 NC_002945.4 998183 . C G 10840.77 . AC=2;AF=1.00;AN=2;DP=378;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.68;SOR=0.770 GT:AD:DP:GQ:PL 1/1:0,378:378:99:10869,1123,0
|
|
|
1636 NC_002945.4 1053067 . T G 9896.77 . AC=2;AF=1.00;AN=2;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.19;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,339:339:99:9925,1004,0
|
|
|
1637 NC_002945.4 1087368 . G A 6513.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=2.656;ClippingRankSum=0.000;DP=233;ExcessHet=3.0103;FS=2.952;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.96;ReadPosRankSum=0.578;SOR=0.168 GT:AD:DP:GQ:PL 1/1:2,231:233:99:6542,672,0
|
|
|
1638 NC_002945.4 1092430 . N . . . . GT ./.
|
|
|
1639 NC_002945.4 1092431 . N . . . . GT ./.
|
|
|
1640 NC_002945.4 1096802 . T G 6064.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQRankSum=0.042;QD=34.66;ReadPosRankSum=2.149;SOR=2.584 GT:AD:DP:GQ:PL 1/1:1,174:175:99:6093,485,0
|
|
|
1641 NC_002945.4 1104019 . T C 10941.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;ClippingRankSum=0.000;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.20;ReadPosRankSum=1.431;SOR=0.972 GT:AD:DP:GQ:PL 1/1:2,386:388:99:10970,1130,0
|
|
|
1642 NC_002945.4 1124266 . G A 9536.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=2.005;ClippingRankSum=0.000;DP=335;ExcessHet=3.0103;FS=3.102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.47;ReadPosRankSum=1.484;SOR=0.300 GT:AD:DP:GQ:PL 1/1:1,334:335:99:9565,987,0
|
|
|
1643 NC_002945.4 1137800 . G C 7224.77 . AC=2;AF=1.00;AN=2;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.11;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,225:225:99:7253,673,0
|
|
|
1644 NC_002945.4 1139489 . T C 6218.77 . AC=2;AF=1.00;AN=2;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.47;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6247,630,0
|
|
|
1645 NC_002945.4 1141124 . C T 4889.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.811;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.78;ReadPosRankSum=-0.454;SOR=0.325 GT:AD:DP:GQ:PL 1/1:1,175:176:99:4918,508,0
|
|
|
1646 NC_002945.4 1168458 . G T 6765.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=2.643;ClippingRankSum=0.000;DP=245;ExcessHet=3.0103;FS=3.016;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.62;ReadPosRankSum=1.997;SOR=0.125 GT:AD:DP:GQ:PL 1/1:2,243:245:99:6794,704,0
|
|
|
1647 NC_002945.4 1206896 . A G 7606.77 . AC=2;AF=1.00;AN=2;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.11;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,223:223:99:7635,664,0
|
|
|
1648 NC_002945.4 1214540 . T C 1448.77 . AC=2;AF=1.00;AN=2;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.64;QD=32.93;SOR=2.636 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1477,130,0
|
|
|
1649 NC_002945.4 1214767 . C T 72.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.901;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=41.217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-6.174;SOR=2.203 GT:AD:DP:GQ:PL 0/1:36,14:50:99:101,0,712
|
|
|
1650 NC_002945.4 1218462 . N . . . . GT ./.
|
|
|
1651 NC_002945.4 1218463 . N . . . . GT ./.
|
|
|
1652 NC_002945.4 1218464 . N . . . . GT ./.
|
|
|
1653 NC_002945.4 1218966 . N . . . . GT ./.
|
|
|
1654 NC_002945.4 1218967 . N . . . . GT ./.
|
|
|
1655 NC_002945.4 1218968 . N . . . . GT ./.
|
|
|
1656 NC_002945.4 1218969 . N . . . . GT ./.
|
|
|
1657 NC_002945.4 1218970 . N . . . . GT ./.
|
|
|
1658 NC_002945.4 1218971 . N . . . . GT ./.
|
|
|
1659 NC_002945.4 1218972 . N . . . . GT ./.
|
|
|
1660 NC_002945.4 1218973 . N . . . . GT ./.
|
|
|
1661 NC_002945.4 1218974 . N . . . . GT ./.
|
|
|
1662 NC_002945.4 1218975 . N . . . . GT ./.
|
|
|
1663 NC_002945.4 1218976 . N . . . . GT ./.
|
|
|
1664 NC_002945.4 1218977 . N . . . . GT ./.
|
|
|
1665 NC_002945.4 1218978 . N . . . . GT ./.
|
|
|
1666 NC_002945.4 1218979 . N . . . . GT ./.
|
|
|
1667 NC_002945.4 1218980 . N . . . . GT ./.
|
|
|
1668 NC_002945.4 1218981 . N . . . . GT ./.
|
|
|
1669 NC_002945.4 1218982 . N . . . . GT ./.
|
|
|
1670 NC_002945.4 1218983 . N . . . . GT ./.
|
|
|
1671 NC_002945.4 1218984 . N . . . . GT ./.
|
|
|
1672 NC_002945.4 1218985 . N . . . . GT ./.
|
|
|
1673 NC_002945.4 1218986 . N . . . . GT ./.
|
|
|
1674 NC_002945.4 1218987 . N . . . . GT ./.
|
|
|
1675 NC_002945.4 1218988 . N . . . . GT ./.
|
|
|
1676 NC_002945.4 1218989 . N . . . . GT ./.
|
|
|
1677 NC_002945.4 1218990 . N . . . . GT ./.
|
|
|
1678 NC_002945.4 1218991 . N . . . . GT ./.
|
|
|
1679 NC_002945.4 1218992 . N . . . . GT ./.
|
|
|
1680 NC_002945.4 1218993 . N . . . . GT ./.
|
|
|
1681 NC_002945.4 1218994 . N . . . . GT ./.
|
|
|
1682 NC_002945.4 1218995 . N . . . . GT ./.
|
|
|
1683 NC_002945.4 1218996 . N . . . . GT ./.
|
|
|
1684 NC_002945.4 1218997 . N . . . . GT ./.
|
|
|
1685 NC_002945.4 1218998 . N . . . . GT ./.
|
|
|
1686 NC_002945.4 1218999 . N . . . . GT ./.
|
|
|
1687 NC_002945.4 1219000 . N . . . . GT ./.
|
|
|
1688 NC_002945.4 1219001 . N . . . . GT ./.
|
|
|
1689 NC_002945.4 1219002 . N . . . . GT ./.
|
|
|
1690 NC_002945.4 1219003 . N . . . . GT ./.
|
|
|
1691 NC_002945.4 1219004 . N . . . . GT ./.
|
|
|
1692 NC_002945.4 1219005 . N . . . . GT ./.
|
|
|
1693 NC_002945.4 1219006 . N . . . . GT ./.
|
|
|
1694 NC_002945.4 1219007 . N . . . . GT ./.
|
|
|
1695 NC_002945.4 1219008 . N . . . . GT ./.
|
|
|
1696 NC_002945.4 1219009 . N . . . . GT ./.
|
|
|
1697 NC_002945.4 1219010 . N . . . . GT ./.
|
|
|
1698 NC_002945.4 1219011 . N . . . . GT ./.
|
|
|
1699 NC_002945.4 1219012 . N . . . . GT ./.
|
|
|
1700 NC_002945.4 1219013 . N . . . . GT ./.
|
|
|
1701 NC_002945.4 1219014 . N . . . . GT ./.
|
|
|
1702 NC_002945.4 1219015 . N . . . . GT ./.
|
|
|
1703 NC_002945.4 1219016 . N . . . . GT ./.
|
|
|
1704 NC_002945.4 1219017 . N . . . . GT ./.
|
|
|
1705 NC_002945.4 1219018 . N . . . . GT ./.
|
|
|
1706 NC_002945.4 1219019 . N . . . . GT ./.
|
|
|
1707 NC_002945.4 1219020 . N . . . . GT ./.
|
|
|
1708 NC_002945.4 1219021 . N . . . . GT ./.
|
|
|
1709 NC_002945.4 1219022 . N . . . . GT ./.
|
|
|
1710 NC_002945.4 1219023 . N . . . . GT ./.
|
|
|
1711 NC_002945.4 1219024 . N . . . . GT ./.
|
|
|
1712 NC_002945.4 1219025 . N . . . . GT ./.
|
|
|
1713 NC_002945.4 1219026 . N . . . . GT ./.
|
|
|
1714 NC_002945.4 1219027 . N . . . . GT ./.
|
|
|
1715 NC_002945.4 1219028 . N . . . . GT ./.
|
|
|
1716 NC_002945.4 1219029 . N . . . . GT ./.
|
|
|
1717 NC_002945.4 1219030 . N . . . . GT ./.
|
|
|
1718 NC_002945.4 1219031 . N . . . . GT ./.
|
|
|
1719 NC_002945.4 1219032 . N . . . . GT ./.
|
|
|
1720 NC_002945.4 1219033 . N . . . . GT ./.
|
|
|
1721 NC_002945.4 1219034 . N . . . . GT ./.
|
|
|
1722 NC_002945.4 1219035 . N . . . . GT ./.
|
|
|
1723 NC_002945.4 1219036 . N . . . . GT ./.
|
|
|
1724 NC_002945.4 1219037 . N . . . . GT ./.
|
|
|
1725 NC_002945.4 1219038 . N . . . . GT ./.
|
|
|
1726 NC_002945.4 1219039 . N . . . . GT ./.
|
|
|
1727 NC_002945.4 1219040 . N . . . . GT ./.
|
|
|
1728 NC_002945.4 1219041 . N . . . . GT ./.
|
|
|
1729 NC_002945.4 1219042 . N . . . . GT ./.
|
|
|
1730 NC_002945.4 1219043 . N . . . . GT ./.
|
|
|
1731 NC_002945.4 1219044 . N . . . . GT ./.
|
|
|
1732 NC_002945.4 1219045 . N . . . . GT ./.
|
|
|
1733 NC_002945.4 1219046 . N . . . . GT ./.
|
|
|
1734 NC_002945.4 1219387 . G A 43.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655;ClippingRankSum=0.000;DP=10;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-2.655;SOR=0.027 GT:AD:DP:GQ:PL 0/1:5,4:9:72:72,0,182
|
|
|
1735 NC_002945.4 1230875 . G T 6698.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.000;DP=238;ExcessHet=3.0103;FS=7.955;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.51;ReadPosRankSum=5.525;SOR=1.840 GT:AD:DP:GQ:PL 1/1:5,222:227:99:6727,530,0
|
|
|
1736 NC_002945.4 1285158 . C T 6685.77 . AC=2;AF=1.00;AN=2;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.24;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6714,639,0
|
|
|
1737 NC_002945.4 1295549 . C T 11485.77 . AC=2;AF=1.00;AN=2;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.15;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,408:408:99:11514,1216,0
|
|
|
1738 NC_002945.4 1329774 . C T 7694.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.889;ClippingRankSum=0.000;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.39;ReadPosRankSum=1.370;SOR=0.261 GT:AD:DP:GQ:PL 1/1:1,270:271:99:7723,794,0
|
|
|
1739 NC_002945.4 1343752 . A G 1334.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=15.563;MLEAC=2;MLEAF=1.00;MQ=39.61;MQRankSum=6.085;QD=33.38;ReadPosRankSum=-0.418;SOR=7.167 GT:AD:DP:GQ:PL 1/1:1,35:36:98:1363,98,0
|
|
|
1740 NC_002945.4 1367962 . C G 7373.77 . AC=2;AF=1.00;AN=2;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.48;SOR=2.701 GT:AD:DP:GQ:PL 1/1:0,206:206:99:7402,616,0
|
|
|
1741 NC_002945.4 1417775 . N . . . . GT ./.
|
|
|
1742 NC_002945.4 1417776 . N . . . . GT ./.
|
|
|
1743 NC_002945.4 1417777 . N . . . . GT ./.
|
|
|
1744 NC_002945.4 1417778 . N . . . . GT ./.
|
|
|
1745 NC_002945.4 1417779 . N . . . . GT ./.
|
|
|
1746 NC_002945.4 1417780 . N . . . . GT ./.
|
|
|
1747 NC_002945.4 1417781 . N . . . . GT ./.
|
|
|
1748 NC_002945.4 1417782 . N . . . . GT ./.
|
|
|
1749 NC_002945.4 1417783 . N . . . . GT ./.
|
|
|
1750 NC_002945.4 1417784 . N . . . . GT ./.
|
|
|
1751 NC_002945.4 1417785 . N . . . . GT ./.
|
|
|
1752 NC_002945.4 1417786 . N . . . . GT ./.
|
|
|
1753 NC_002945.4 1417787 . N . . . . GT ./.
|
|
|
1754 NC_002945.4 1417788 . N . . . . GT ./.
|
|
|
1755 NC_002945.4 1417789 . N . . . . GT ./.
|
|
|
1756 NC_002945.4 1417790 . N . . . . GT ./.
|
|
|
1757 NC_002945.4 1417791 . N . . . . GT ./.
|
|
|
1758 NC_002945.4 1417792 . N . . . . GT ./.
|
|
|
1759 NC_002945.4 1417793 . N . . . . GT ./.
|
|
|
1760 NC_002945.4 1417794 . N . . . . GT ./.
|
|
|
1761 NC_002945.4 1417795 . N . . . . GT ./.
|
|
|
1762 NC_002945.4 1417796 . N . . . . GT ./.
|
|
|
1763 NC_002945.4 1417797 . N . . . . GT ./.
|
|
|
1764 NC_002945.4 1417798 . N . . . . GT ./.
|
|
|
1765 NC_002945.4 1417799 . N . . . . GT ./.
|
|
|
1766 NC_002945.4 1417800 . N . . . . GT ./.
|
|
|
1767 NC_002945.4 1417801 . N . . . . GT ./.
|
|
|
1768 NC_002945.4 1417802 . N . . . . GT ./.
|
|
|
1769 NC_002945.4 1417803 . N . . . . GT ./.
|
|
|
1770 NC_002945.4 1417804 . N . . . . GT ./.
|
|
|
1771 NC_002945.4 1417805 . N . . . . GT ./.
|
|
|
1772 NC_002945.4 1421330 . G A 4105.77 . AC=2;AF=1.00;AN=2;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.66;SOR=1.565 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4134,456,0
|
|
|
1773 NC_002945.4 1421904 . T C 9463.77 . AC=2;AF=1.00;AN=2;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.34;SOR=0.819 GT:AD:DP:GQ:PL 1/1:0,302:302:99:9492,902,0
|
|
|
1774 NC_002945.4 1442194 . T G 8885.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.879;ClippingRankSum=0.000;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=31.85;ReadPosRankSum=-0.953;SOR=0.310 GT:AD:DP:GQ:PL 1/1:1,278:279:99:8914,824,0
|
|
|
1775 NC_002945.4 1491894 . N . . . . GT ./.
|
|
|
1776 NC_002945.4 1491895 . N . . . . GT ./.
|
|
|
1777 NC_002945.4 1491896 . N . . . . GT ./.
|
|
|
1778 NC_002945.4 1491897 . N . . . . GT ./.
|
|
|
1779 NC_002945.4 1491898 . N . . . . GT ./.
|
|
|
1780 NC_002945.4 1491899 . N . . . . GT ./.
|
|
|
1781 NC_002945.4 1491900 . N . . . . GT ./.
|
|
|
1782 NC_002945.4 1491901 . N . . . . GT ./.
|
|
|
1783 NC_002945.4 1491902 . N . . . . GT ./.
|
|
|
1784 NC_002945.4 1491903 . N . . . . GT ./.
|
|
|
1785 NC_002945.4 1491904 . N . . . . GT ./.
|
|
|
1786 NC_002945.4 1491905 . N . . . . GT ./.
|
|
|
1787 NC_002945.4 1491906 . N . . . . GT ./.
|
|
|
1788 NC_002945.4 1491907 . N . . . . GT ./.
|
|
|
1789 NC_002945.4 1491908 . N . . . . GT ./.
|
|
|
1790 NC_002945.4 1491909 . N . . . . GT ./.
|
|
|
1791 NC_002945.4 1491910 . N . . . . GT ./.
|
|
|
1792 NC_002945.4 1491911 . N . . . . GT ./.
|
|
|
1793 NC_002945.4 1491912 . N . . . . GT ./.
|
|
|
1794 NC_002945.4 1491913 . N . . . . GT ./.
|
|
|
1795 NC_002945.4 1491914 . N . . . . GT ./.
|
|
|
1796 NC_002945.4 1498117 . G A 8837.77 . AC=2;AF=1.00;AN=2;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.69;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,308:308:99:8866,916,0
|
|
|
1797 NC_002945.4 1509487 . A G 8127.77 . AC=2;AF=1.00;AN=2;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.14;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,261:261:99:8156,781,0
|
|
|
1798 NC_002945.4 1529147 . T G 9064.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=2.010;ClippingRankSum=0.000;DP=318;ExcessHet=3.0103;FS=3.065;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.51;ReadPosRankSum=1.715;SOR=0.274 GT:AD:DP:GQ:PL 1/1:1,317:318:99:9093,936,0
|
|
|
1799 NC_002945.4 1533175 . A G 11277.77 . AC=2;AF=1.00;AN=2;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.70;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,393:393:99:11306,1171,0
|
|
|
1800 NC_002945.4 1535271 . A T 6912.77 . AC=2;AF=1.00;AN=2;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.76;QD=29.05;SOR=1.252 GT:AD:DP:GQ:PL 1/1:0,238:238:99:6941,710,0
|
|
|
1801 NC_002945.4 1573990 . N . . . . GT ./.
|
|
|
1802 NC_002945.4 1573991 . N . . . . GT ./.
|
|
|
1803 NC_002945.4 1573992 . N . . . . GT ./.
|
|
|
1804 NC_002945.4 1573993 . N . . . . GT ./.
|
|
|
1805 NC_002945.4 1573994 . N . . . . GT ./.
|
|
|
1806 NC_002945.4 1573995 . N . . . . GT ./.
|
|
|
1807 NC_002945.4 1573996 . N . . . . GT ./.
|
|
|
1808 NC_002945.4 1573997 . N . . . . GT ./.
|
|
|
1809 NC_002945.4 1573998 . N . . . . GT ./.
|
|
|
1810 NC_002945.4 1573999 . N . . . . GT ./.
|
|
|
1811 NC_002945.4 1574000 . N . . . . GT ./.
|
|
|
1812 NC_002945.4 1574001 . N . . . . GT ./.
|
|
|
1813 NC_002945.4 1574002 . N . . . . GT ./.
|
|
|
1814 NC_002945.4 1574003 . N . . . . GT ./.
|
|
|
1815 NC_002945.4 1574004 . N . . . . GT ./.
|
|
|
1816 NC_002945.4 1574005 . N . . . . GT ./.
|
|
|
1817 NC_002945.4 1574006 . N . . . . GT ./.
|
|
|
1818 NC_002945.4 1574007 . N . . . . GT ./.
|
|
|
1819 NC_002945.4 1574008 . N . . . . GT ./.
|
|
|
1820 NC_002945.4 1574009 . N . . . . GT ./.
|
|
|
1821 NC_002945.4 1574010 . N . . . . GT ./.
|
|
|
1822 NC_002945.4 1574011 . N . . . . GT ./.
|
|
|
1823 NC_002945.4 1574012 . N . . . . GT ./.
|
|
|
1824 NC_002945.4 1574013 . N . . . . GT ./.
|
|
|
1825 NC_002945.4 1574014 . N . . . . GT ./.
|
|
|
1826 NC_002945.4 1574015 . N . . . . GT ./.
|
|
|
1827 NC_002945.4 1574016 . N . . . . GT ./.
|
|
|
1828 NC_002945.4 1574017 . N . . . . GT ./.
|
|
|
1829 NC_002945.4 1582413 . G C 7693.77 . AC=2;AF=1.00;AN=2;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.94;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,257:257:99:7722,762,0
|
|
|
1830 NC_002945.4 1601835 . G A 8195.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=-1.869;ClippingRankSum=0.000;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.27;ReadPosRankSum=-0.436;SOR=0.289 GT:AD:DP:GQ:PL 1/1:1,311:312:99:8224,868,0
|
|
|
1831 NC_002945.4 1610248 . C G 7736.77 . AC=2;AF=1.00;AN=2;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.42;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,263:263:99:7765,784,0
|
|
|
1832 NC_002945.4 1619153 . A G 2239.77 . AC=2;AF=1.00;AN=2;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=35.00;SOR=1.503 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2268,188,0
|
|
|
1833 NC_002945.4 1632869 . G T 2587.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.762;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=4.102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.75;ReadPosRankSum=1.959;SOR=1.033 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2616,255,0
|
|
|
1834 NC_002945.4 1633321 . N . . . . GT ./.
|
|
|
1835 NC_002945.4 1633322 . N . . . . GT ./.
|
|
|
1836 NC_002945.4 1633323 . N . . . . GT ./.
|
|
|
1837 NC_002945.4 1633324 . N . . . . GT ./.
|
|
|
1838 NC_002945.4 1633325 . N . . . . GT ./.
|
|
|
1839 NC_002945.4 1633326 . N . . . . GT ./.
|
|
|
1840 NC_002945.4 1633327 . N . . . . GT ./.
|
|
|
1841 NC_002945.4 1633328 . N . . . . GT ./.
|
|
|
1842 NC_002945.4 1633329 . N . . . . GT ./.
|
|
|
1843 NC_002945.4 1633330 . N . . . . GT ./.
|
|
|
1844 NC_002945.4 1633331 . N . . . . GT ./.
|
|
|
1845 NC_002945.4 1633332 . N . . . . GT ./.
|
|
|
1846 NC_002945.4 1633333 . N . . . . GT ./.
|
|
|
1847 NC_002945.4 1633334 . N . . . . GT ./.
|
|
|
1848 NC_002945.4 1633335 . N . . . . GT ./.
|
|
|
1849 NC_002945.4 1633336 . N . . . . GT ./.
|
|
|
1850 NC_002945.4 1633337 . N . . . . GT ./.
|
|
|
1851 NC_002945.4 1633338 . N . . . . GT ./.
|
|
|
1852 NC_002945.4 1633339 . N . . . . GT ./.
|
|
|
1853 NC_002945.4 1633340 . N . . . . GT ./.
|
|
|
1854 NC_002945.4 1633341 . N . . . . GT ./.
|
|
|
1855 NC_002945.4 1633342 . N . . . . GT ./.
|
|
|
1856 NC_002945.4 1633343 . N . . . . GT ./.
|
|
|
1857 NC_002945.4 1633344 . N . . . . GT ./.
|
|
|
1858 NC_002945.4 1633345 . N . . . . GT ./.
|
|
|
1859 NC_002945.4 1633346 . N . . . . GT ./.
|
|
|
1860 NC_002945.4 1633347 . N . . . . GT ./.
|
|
|
1861 NC_002945.4 1633348 . N . . . . GT ./.
|
|
|
1862 NC_002945.4 1633349 . N . . . . GT ./.
|
|
|
1863 NC_002945.4 1633350 . N . . . . GT ./.
|
|
|
1864 NC_002945.4 1633351 . N . . . . GT ./.
|
|
|
1865 NC_002945.4 1634471 . N . . . . GT ./.
|
|
|
1866 NC_002945.4 1634472 . N . . . . GT ./.
|
|
|
1867 NC_002945.4 1634473 . N . . . . GT ./.
|
|
|
1868 NC_002945.4 1634474 . N . . . . GT ./.
|
|
|
1869 NC_002945.4 1634475 . N . . . . GT ./.
|
|
|
1870 NC_002945.4 1634476 . N . . . . GT ./.
|
|
|
1871 NC_002945.4 1634477 . N . . . . GT ./.
|
|
|
1872 NC_002945.4 1634478 . N . . . . GT ./.
|
|
|
1873 NC_002945.4 1634479 . N . . . . GT ./.
|
|
|
1874 NC_002945.4 1634480 . N . . . . GT ./.
|
|
|
1875 NC_002945.4 1634481 . N . . . . GT ./.
|
|
|
1876 NC_002945.4 1634482 . N . . . . GT ./.
|
|
|
1877 NC_002945.4 1634483 . N . . . . GT ./.
|
|
|
1878 NC_002945.4 1634484 . N . . . . GT ./.
|
|
|
1879 NC_002945.4 1634485 . N . . . . GT ./.
|
|
|
1880 NC_002945.4 1634486 . N . . . . GT ./.
|
|
|
1881 NC_002945.4 1634487 . N . . . . GT ./.
|
|
|
1882 NC_002945.4 1634488 . N . . . . GT ./.
|
|
|
1883 NC_002945.4 1634489 . N . . . . GT ./.
|
|
|
1884 NC_002945.4 1634490 . N . . . . GT ./.
|
|
|
1885 NC_002945.4 1634491 . N . . . . GT ./.
|
|
|
1886 NC_002945.4 1634492 . N . . . . GT ./.
|
|
|
1887 NC_002945.4 1634493 . N . . . . GT ./.
|
|
|
1888 NC_002945.4 1634494 . N . . . . GT ./.
|
|
|
1889 NC_002945.4 1634495 . N . . . . GT ./.
|
|
|
1890 NC_002945.4 1634496 . N . . . . GT ./.
|
|
|
1891 NC_002945.4 1634497 . N . . . . GT ./.
|
|
|
1892 NC_002945.4 1634498 . N . . . . GT ./.
|
|
|
1893 NC_002945.4 1634499 . N . . . . GT ./.
|
|
|
1894 NC_002945.4 1634500 . N . . . . GT ./.
|
|
|
1895 NC_002945.4 1634501 . N . . . . GT ./.
|
|
|
1896 NC_002945.4 1634502 . N . . . . GT ./.
|
|
|
1897 NC_002945.4 1634503 . N . . . . GT ./.
|
|
|
1898 NC_002945.4 1634504 . N . . . . GT ./.
|
|
|
1899 NC_002945.4 1634505 . N . . . . GT ./.
|
|
|
1900 NC_002945.4 1634506 . N . . . . GT ./.
|
|
|
1901 NC_002945.4 1634507 . N . . . . GT ./.
|
|
|
1902 NC_002945.4 1634508 . N . . . . GT ./.
|
|
|
1903 NC_002945.4 1634509 . N . . . . GT ./.
|
|
|
1904 NC_002945.4 1634510 . N . . . . GT ./.
|
|
|
1905 NC_002945.4 1634511 . N . . . . GT ./.
|
|
|
1906 NC_002945.4 1634512 . N . . . . GT ./.
|
|
|
1907 NC_002945.4 1634513 . N . . . . GT ./.
|
|
|
1908 NC_002945.4 1634514 . N . . . . GT ./.
|
|
|
1909 NC_002945.4 1634515 . N . . . . GT ./.
|
|
|
1910 NC_002945.4 1634516 . N . . . . GT ./.
|
|
|
1911 NC_002945.4 1634517 . N . . . . GT ./.
|
|
|
1912 NC_002945.4 1634518 . N . . . . GT ./.
|
|
|
1913 NC_002945.4 1634519 . N . . . . GT ./.
|
|
|
1914 NC_002945.4 1634520 . N . . . . GT ./.
|
|
|
1915 NC_002945.4 1634521 . N . . . . GT ./.
|
|
|
1916 NC_002945.4 1634522 . N . . . . GT ./.
|
|
|
1917 NC_002945.4 1634523 . N . . . . GT ./.
|
|
|
1918 NC_002945.4 1634524 . N . . . . GT ./.
|
|
|
1919 NC_002945.4 1634525 . N . . . . GT ./.
|
|
|
1920 NC_002945.4 1634526 . N . . . . GT ./.
|
|
|
1921 NC_002945.4 1634527 . N . . . . GT ./.
|
|
|
1922 NC_002945.4 1634528 . N . . . . GT ./.
|
|
|
1923 NC_002945.4 1634529 . N . . . . GT ./.
|
|
|
1924 NC_002945.4 1634530 . N . . . . GT ./.
|
|
|
1925 NC_002945.4 1634531 . N . . . . GT ./.
|
|
|
1926 NC_002945.4 1634532 . N . . . . GT ./.
|
|
|
1927 NC_002945.4 1634533 . N . . . . GT ./.
|
|
|
1928 NC_002945.4 1634534 . N . . . . GT ./.
|
|
|
1929 NC_002945.4 1634535 . N . . . . GT ./.
|
|
|
1930 NC_002945.4 1634536 . N . . . . GT ./.
|
|
|
1931 NC_002945.4 1634537 . N . . . . GT ./.
|
|
|
1932 NC_002945.4 1634538 . N . . . . GT ./.
|
|
|
1933 NC_002945.4 1634539 . N . . . . GT ./.
|
|
|
1934 NC_002945.4 1634540 . N . . . . GT ./.
|
|
|
1935 NC_002945.4 1634541 . N . . . . GT ./.
|
|
|
1936 NC_002945.4 1634542 . N . . . . GT ./.
|
|
|
1937 NC_002945.4 1634543 . N . . . . GT ./.
|
|
|
1938 NC_002945.4 1634544 . N . . . . GT ./.
|
|
|
1939 NC_002945.4 1634545 . N . . . . GT ./.
|
|
|
1940 NC_002945.4 1634546 . N . . . . GT ./.
|
|
|
1941 NC_002945.4 1634547 . N . . . . GT ./.
|
|
|
1942 NC_002945.4 1634548 . N . . . . GT ./.
|
|
|
1943 NC_002945.4 1634549 . N . . . . GT ./.
|
|
|
1944 NC_002945.4 1634550 . N . . . . GT ./.
|
|
|
1945 NC_002945.4 1634551 . N . . . . GT ./.
|
|
|
1946 NC_002945.4 1634552 . N . . . . GT ./.
|
|
|
1947 NC_002945.4 1634553 . N . . . . GT ./.
|
|
|
1948 NC_002945.4 1634554 . N . . . . GT ./.
|
|
|
1949 NC_002945.4 1634555 . N . . . . GT ./.
|
|
|
1950 NC_002945.4 1634556 . N . . . . GT ./.
|
|
|
1951 NC_002945.4 1634557 . N . . . . GT ./.
|
|
|
1952 NC_002945.4 1634558 . N . . . . GT ./.
|
|
|
1953 NC_002945.4 1634559 . N . . . . GT ./.
|
|
|
1954 NC_002945.4 1634560 . N . . . . GT ./.
|
|
|
1955 NC_002945.4 1634903 . N . . . . GT ./.
|
|
|
1956 NC_002945.4 1634904 . N . . . . GT ./.
|
|
|
1957 NC_002945.4 1634905 . N . . . . GT ./.
|
|
|
1958 NC_002945.4 1634906 . N . . . . GT ./.
|
|
|
1959 NC_002945.4 1634907 . N . . . . GT ./.
|
|
|
1960 NC_002945.4 1634908 . N . . . . GT ./.
|
|
|
1961 NC_002945.4 1634909 . N . . . . GT ./.
|
|
|
1962 NC_002945.4 1634910 . N . . . . GT ./.
|
|
|
1963 NC_002945.4 1634911 . N . . . . GT ./.
|
|
|
1964 NC_002945.4 1634912 . N . . . . GT ./.
|
|
|
1965 NC_002945.4 1634913 . N . . . . GT ./.
|
|
|
1966 NC_002945.4 1634914 . N . . . . GT ./.
|
|
|
1967 NC_002945.4 1634915 . N . . . . GT ./.
|
|
|
1968 NC_002945.4 1634916 . N . . . . GT ./.
|
|
|
1969 NC_002945.4 1634917 . N . . . . GT ./.
|
|
|
1970 NC_002945.4 1634918 . N . . . . GT ./.
|
|
|
1971 NC_002945.4 1634919 . N . . . . GT ./.
|
|
|
1972 NC_002945.4 1634920 . N . . . . GT ./.
|
|
|
1973 NC_002945.4 1634921 . N . . . . GT ./.
|
|
|
1974 NC_002945.4 1634922 . N . . . . GT ./.
|
|
|
1975 NC_002945.4 1634923 . N . . . . GT ./.
|
|
|
1976 NC_002945.4 1634924 . N . . . . GT ./.
|
|
|
1977 NC_002945.4 1634925 . N . . . . GT ./.
|
|
|
1978 NC_002945.4 1634926 . N . . . . GT ./.
|
|
|
1979 NC_002945.4 1634927 . N . . . . GT ./.
|
|
|
1980 NC_002945.4 1634928 . N . . . . GT ./.
|
|
|
1981 NC_002945.4 1634929 . N . . . . GT ./.
|
|
|
1982 NC_002945.4 1634930 . N . . . . GT ./.
|
|
|
1983 NC_002945.4 1634965 . N . . . . GT ./.
|
|
|
1984 NC_002945.4 1634966 . N . . . . GT ./.
|
|
|
1985 NC_002945.4 1634967 . N . . . . GT ./.
|
|
|
1986 NC_002945.4 1634968 . N . . . . GT ./.
|
|
|
1987 NC_002945.4 1634969 . N . . . . GT ./.
|
|
|
1988 NC_002945.4 1634970 . N . . . . GT ./.
|
|
|
1989 NC_002945.4 1634971 . N . . . . GT ./.
|
|
|
1990 NC_002945.4 1634972 . N . . . . GT ./.
|
|
|
1991 NC_002945.4 1634973 . N . . . . GT ./.
|
|
|
1992 NC_002945.4 1634974 . N . . . . GT ./.
|
|
|
1993 NC_002945.4 1634975 . N . . . . GT ./.
|
|
|
1994 NC_002945.4 1634976 . N . . . . GT ./.
|
|
|
1995 NC_002945.4 1634977 . N . . . . GT ./.
|
|
|
1996 NC_002945.4 1634978 . N . . . . GT ./.
|
|
|
1997 NC_002945.4 1634979 . N . . . . GT ./.
|
|
|
1998 NC_002945.4 1634980 . N . . . . GT ./.
|
|
|
1999 NC_002945.4 1634981 . N . . . . GT ./.
|
|
|
2000 NC_002945.4 1634982 . N . . . . GT ./.
|
|
|
2001 NC_002945.4 1634983 . N . . . . GT ./.
|
|
|
2002 NC_002945.4 1634984 . N . . . . GT ./.
|
|
|
2003 NC_002945.4 1634985 . N . . . . GT ./.
|
|
|
2004 NC_002945.4 1634986 . N . . . . GT ./.
|
|
|
2005 NC_002945.4 1634987 . N . . . . GT ./.
|
|
|
2006 NC_002945.4 1634988 . N . . . . GT ./.
|
|
|
2007 NC_002945.4 1634989 . N . . . . GT ./.
|
|
|
2008 NC_002945.4 1634990 . N . . . . GT ./.
|
|
|
2009 NC_002945.4 1634991 . N . . . . GT ./.
|
|
|
2010 NC_002945.4 1634992 . N . . . . GT ./.
|
|
|
2011 NC_002945.4 1634993 . N . . . . GT ./.
|
|
|
2012 NC_002945.4 1634994 . N . . . . GT ./.
|
|
|
2013 NC_002945.4 1634995 . N . . . . GT ./.
|
|
|
2014 NC_002945.4 1634996 . N . . . . GT ./.
|
|
|
2015 NC_002945.4 1634997 . N . . . . GT ./.
|
|
|
2016 NC_002945.4 1634998 . N . . . . GT ./.
|
|
|
2017 NC_002945.4 1634999 . N . . . . GT ./.
|
|
|
2018 NC_002945.4 1635000 . N . . . . GT ./.
|
|
|
2019 NC_002945.4 1635001 . N . . . . GT ./.
|
|
|
2020 NC_002945.4 1635002 . N . . . . GT ./.
|
|
|
2021 NC_002945.4 1635003 . N . . . . GT ./.
|
|
|
2022 NC_002945.4 1635004 . N . . . . GT ./.
|
|
|
2023 NC_002945.4 1635005 . N . . . . GT ./.
|
|
|
2024 NC_002945.4 1635006 . N . . . . GT ./.
|
|
|
2025 NC_002945.4 1635007 . N . . . . GT ./.
|
|
|
2026 NC_002945.4 1635008 . N . . . . GT ./.
|
|
|
2027 NC_002945.4 1635009 . N . . . . GT ./.
|
|
|
2028 NC_002945.4 1635010 . N . . . . GT ./.
|
|
|
2029 NC_002945.4 1635011 . N . . . . GT ./.
|
|
|
2030 NC_002945.4 1635012 . N . . . . GT ./.
|
|
|
2031 NC_002945.4 1635013 . N . . . . GT ./.
|
|
|
2032 NC_002945.4 1635014 . N . . . . GT ./.
|
|
|
2033 NC_002945.4 1635015 . N . . . . GT ./.
|
|
|
2034 NC_002945.4 1635016 . N . . . . GT ./.
|
|
|
2035 NC_002945.4 1635017 . N . . . . GT ./.
|
|
|
2036 NC_002945.4 1635018 . N . . . . GT ./.
|
|
|
2037 NC_002945.4 1635019 . N . . . . GT ./.
|
|
|
2038 NC_002945.4 1635020 . N . . . . GT ./.
|
|
|
2039 NC_002945.4 1635021 . N . . . . GT ./.
|
|
|
2040 NC_002945.4 1635022 . N . . . . GT ./.
|
|
|
2041 NC_002945.4 1635023 . N . . . . GT ./.
|
|
|
2042 NC_002945.4 1635024 . N . . . . GT ./.
|
|
|
2043 NC_002945.4 1635025 . N . . . . GT ./.
|
|
|
2044 NC_002945.4 1635026 . N . . . . GT ./.
|
|
|
2045 NC_002945.4 1635027 . N . . . . GT ./.
|
|
|
2046 NC_002945.4 1635028 . N . . . . GT ./.
|
|
|
2047 NC_002945.4 1635029 . N . . . . GT ./.
|
|
|
2048 NC_002945.4 1635030 . N . . . . GT ./.
|
|
|
2049 NC_002945.4 1635031 . N . . . . GT ./.
|
|
|
2050 NC_002945.4 1635032 . N . . . . GT ./.
|
|
|
2051 NC_002945.4 1635033 . N . . . . GT ./.
|
|
|
2052 NC_002945.4 1635034 . N . . . . GT ./.
|
|
|
2053 NC_002945.4 1635035 . N . . . . GT ./.
|
|
|
2054 NC_002945.4 1635036 . N . . . . GT ./.
|
|
|
2055 NC_002945.4 1635037 . N . . . . GT ./.
|
|
|
2056 NC_002945.4 1635038 . N . . . . GT ./.
|
|
|
2057 NC_002945.4 1635039 . N . . . . GT ./.
|
|
|
2058 NC_002945.4 1635040 . N . . . . GT ./.
|
|
|
2059 NC_002945.4 1635041 . N . . . . GT ./.
|
|
|
2060 NC_002945.4 1635042 . N . . . . GT ./.
|
|
|
2061 NC_002945.4 1635043 . N . . . . GT ./.
|
|
|
2062 NC_002945.4 1635044 . N . . . . GT ./.
|
|
|
2063 NC_002945.4 1635045 . N . . . . GT ./.
|
|
|
2064 NC_002945.4 1635046 . N . . . . GT ./.
|
|
|
2065 NC_002945.4 1635047 . N . . . . GT ./.
|
|
|
2066 NC_002945.4 1635048 . N . . . . GT ./.
|
|
|
2067 NC_002945.4 1635049 . N . . . . GT ./.
|
|
|
2068 NC_002945.4 1635050 . N . . . . GT ./.
|
|
|
2069 NC_002945.4 1635051 . N . . . . GT ./.
|
|
|
2070 NC_002945.4 1635052 . N . . . . GT ./.
|
|
|
2071 NC_002945.4 1635053 . N . . . . GT ./.
|
|
|
2072 NC_002945.4 1635054 . N . . . . GT ./.
|
|
|
2073 NC_002945.4 1635055 . N . . . . GT ./.
|
|
|
2074 NC_002945.4 1635056 . N . . . . GT ./.
|
|
|
2075 NC_002945.4 1635057 . N . . . . GT ./.
|
|
|
2076 NC_002945.4 1635058 . N . . . . GT ./.
|
|
|
2077 NC_002945.4 1635059 . N . . . . GT ./.
|
|
|
2078 NC_002945.4 1635060 . N . . . . GT ./.
|
|
|
2079 NC_002945.4 1635061 . N . . . . GT ./.
|
|
|
2080 NC_002945.4 1635062 . N . . . . GT ./.
|
|
|
2081 NC_002945.4 1635063 . N . . . . GT ./.
|
|
|
2082 NC_002945.4 1635064 . N . . . . GT ./.
|
|
|
2083 NC_002945.4 1635065 . N . . . . GT ./.
|
|
|
2084 NC_002945.4 1635066 . N . . . . GT ./.
|
|
|
2085 NC_002945.4 1635067 . N . . . . GT ./.
|
|
|
2086 NC_002945.4 1635068 . N . . . . GT ./.
|
|
|
2087 NC_002945.4 1635069 . N . . . . GT ./.
|
|
|
2088 NC_002945.4 1635070 . N . . . . GT ./.
|
|
|
2089 NC_002945.4 1635071 . N . . . . GT ./.
|
|
|
2090 NC_002945.4 1635072 . N . . . . GT ./.
|
|
|
2091 NC_002945.4 1635073 . N . . . . GT ./.
|
|
|
2092 NC_002945.4 1635074 . N . . . . GT ./.
|
|
|
2093 NC_002945.4 1635075 . N . . . . GT ./.
|
|
|
2094 NC_002945.4 1635076 . N . . . . GT ./.
|
|
|
2095 NC_002945.4 1635077 . N . . . . GT ./.
|
|
|
2096 NC_002945.4 1635078 . N . . . . GT ./.
|
|
|
2097 NC_002945.4 1635079 . N . . . . GT ./.
|
|
|
2098 NC_002945.4 1635080 . N . . . . GT ./.
|
|
|
2099 NC_002945.4 1635081 . N . . . . GT ./.
|
|
|
2100 NC_002945.4 1635082 . N . . . . GT ./.
|
|
|
2101 NC_002945.4 1635083 . N . . . . GT ./.
|
|
|
2102 NC_002945.4 1635084 . N . . . . GT ./.
|
|
|
2103 NC_002945.4 1635085 . N . . . . GT ./.
|
|
|
2104 NC_002945.4 1635086 . N . . . . GT ./.
|
|
|
2105 NC_002945.4 1635087 . N . . . . GT ./.
|
|
|
2106 NC_002945.4 1635088 . N . . . . GT ./.
|
|
|
2107 NC_002945.4 1635089 . N . . . . GT ./.
|
|
|
2108 NC_002945.4 1635090 . N . . . . GT ./.
|
|
|
2109 NC_002945.4 1635091 . N . . . . GT ./.
|
|
|
2110 NC_002945.4 1635092 . N . . . . GT ./.
|
|
|
2111 NC_002945.4 1635093 . N . . . . GT ./.
|
|
|
2112 NC_002945.4 1635094 . N . . . . GT ./.
|
|
|
2113 NC_002945.4 1635095 . N . . . . GT ./.
|
|
|
2114 NC_002945.4 1635096 . N . . . . GT ./.
|
|
|
2115 NC_002945.4 1635097 . N . . . . GT ./.
|
|
|
2116 NC_002945.4 1635098 . N . . . . GT ./.
|
|
|
2117 NC_002945.4 1635099 . N . . . . GT ./.
|
|
|
2118 NC_002945.4 1635100 . N . . . . GT ./.
|
|
|
2119 NC_002945.4 1638251 . N . . . . GT ./.
|
|
|
2120 NC_002945.4 1638252 . N . . . . GT ./.
|
|
|
2121 NC_002945.4 1638253 . N . . . . GT ./.
|
|
|
2122 NC_002945.4 1638254 . N . . . . GT ./.
|
|
|
2123 NC_002945.4 1638255 . N . . . . GT ./.
|
|
|
2124 NC_002945.4 1638256 . N . . . . GT ./.
|
|
|
2125 NC_002945.4 1638257 . N . . . . GT ./.
|
|
|
2126 NC_002945.4 1638258 . N . . . . GT ./.
|
|
|
2127 NC_002945.4 1638259 . N . . . . GT ./.
|
|
|
2128 NC_002945.4 1638260 . N . . . . GT ./.
|
|
|
2129 NC_002945.4 1638261 . N . . . . GT ./.
|
|
|
2130 NC_002945.4 1638262 . N . . . . GT ./.
|
|
|
2131 NC_002945.4 1638263 . N . . . . GT ./.
|
|
|
2132 NC_002945.4 1638264 . N . . . . GT ./.
|
|
|
2133 NC_002945.4 1638265 . N . . . . GT ./.
|
|
|
2134 NC_002945.4 1638266 . N . . . . GT ./.
|
|
|
2135 NC_002945.4 1638267 . N . . . . GT ./.
|
|
|
2136 NC_002945.4 1638268 . N . . . . GT ./.
|
|
|
2137 NC_002945.4 1638269 . N . . . . GT ./.
|
|
|
2138 NC_002945.4 1638270 . N . . . . GT ./.
|
|
|
2139 NC_002945.4 1638271 . N . . . . GT ./.
|
|
|
2140 NC_002945.4 1638272 . N . . . . GT ./.
|
|
|
2141 NC_002945.4 1638273 . N . . . . GT ./.
|
|
|
2142 NC_002945.4 1638274 . N . . . . GT ./.
|
|
|
2143 NC_002945.4 1638275 . N . . . . GT ./.
|
|
|
2144 NC_002945.4 1638276 . N . . . . GT ./.
|
|
|
2145 NC_002945.4 1638277 . N . . . . GT ./.
|
|
|
2146 NC_002945.4 1638278 . N . . . . GT ./.
|
|
|
2147 NC_002945.4 1638279 . N . . . . GT ./.
|
|
|
2148 NC_002945.4 1638280 . N . . . . GT ./.
|
|
|
2149 NC_002945.4 1638281 . N . . . . GT ./.
|
|
|
2150 NC_002945.4 1638282 . N . . . . GT ./.
|
|
|
2151 NC_002945.4 1638283 . N . . . . GT ./.
|
|
|
2152 NC_002945.4 1638284 . N . . . . GT ./.
|
|
|
2153 NC_002945.4 1638285 . N . . . . GT ./.
|
|
|
2154 NC_002945.4 1638286 . N . . . . GT ./.
|
|
|
2155 NC_002945.4 1638287 . N . . . . GT ./.
|
|
|
2156 NC_002945.4 1638848 . N . . . . GT ./.
|
|
|
2157 NC_002945.4 1638849 . N . . . . GT ./.
|
|
|
2158 NC_002945.4 1638850 . N . . . . GT ./.
|
|
|
2159 NC_002945.4 1638851 . N . . . . GT ./.
|
|
|
2160 NC_002945.4 1638852 . N . . . . GT ./.
|
|
|
2161 NC_002945.4 1638853 . N . . . . GT ./.
|
|
|
2162 NC_002945.4 1638854 . N . . . . GT ./.
|
|
|
2163 NC_002945.4 1638855 . N . . . . GT ./.
|
|
|
2164 NC_002945.4 1638856 . N . . . . GT ./.
|
|
|
2165 NC_002945.4 1638857 . N . . . . GT ./.
|
|
|
2166 NC_002945.4 1638858 . N . . . . GT ./.
|
|
|
2167 NC_002945.4 1638859 . N . . . . GT ./.
|
|
|
2168 NC_002945.4 1638860 . N . . . . GT ./.
|
|
|
2169 NC_002945.4 1638861 . N . . . . GT ./.
|
|
|
2170 NC_002945.4 1638862 . N . . . . GT ./.
|
|
|
2171 NC_002945.4 1638863 . N . . . . GT ./.
|
|
|
2172 NC_002945.4 1638864 . N . . . . GT ./.
|
|
|
2173 NC_002945.4 1638865 . N . . . . GT ./.
|
|
|
2174 NC_002945.4 1638866 . N . . . . GT ./.
|
|
|
2175 NC_002945.4 1638867 . N . . . . GT ./.
|
|
|
2176 NC_002945.4 1638868 . N . . . . GT ./.
|
|
|
2177 NC_002945.4 1638869 . N . . . . GT ./.
|
|
|
2178 NC_002945.4 1638870 . N . . . . GT ./.
|
|
|
2179 NC_002945.4 1638871 . N . . . . GT ./.
|
|
|
2180 NC_002945.4 1638872 . N . . . . GT ./.
|
|
|
2181 NC_002945.4 1638873 . N . . . . GT ./.
|
|
|
2182 NC_002945.4 1653866 . C A 6879.77 . AC=2;AF=1.00;AN=2;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.44;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,226:226:99:6908,673,0
|
|
|
2183 NC_002945.4 1665501 . G A 6621.77 . AC=2;AF=1.00;AN=2;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.07;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,254:254:99:6650,745,0
|
|
|
2184 NC_002945.4 1677471 . C G 7578.77 . AC=2;AF=1.00;AN=2;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.58;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7607,719,0
|
|
|
2185 NC_002945.4 1690441 . G A 6232.77 . AC=2;AF=1.00;AN=2;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.59;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6261,643,0
|
|
|
2186 NC_002945.4 1705279 . C G 8183.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.797;ClippingRankSum=0.000;DP=258;ExcessHet=3.0103;FS=3.044;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=31.72;ReadPosRankSum=2.478;SOR=0.260 GT:AD:DP:GQ:PL 1/1:1,257:258:99:8212,761,0
|
|
|
2187 NC_002945.4 1716181 . T G 8964.77 . AC=2;AF=1.00;AN=2;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.29;SOR=0.915 GT:AD:DP:GQ:PL 1/1:0,296:296:99:8993,882,0
|
|
|
2188 NC_002945.4 1717086 . T C 8208.77 . AC=2;AF=1.00;AN=2;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.96;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,274:274:99:8237,813,0
|
|
|
2189 NC_002945.4 1721077 . A G 8899.77 . AC=2;AF=1.00;AN=2;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.27;SOR=0.901 GT:AD:DP:GQ:PL 1/1:0,294:294:99:8928,878,0
|
|
|
2190 NC_002945.4 1726384 . C G 10800.77 . AC=2;AF=1.00;AN=2;DP=362;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.92;SOR=0.879 GT:AD:DP:GQ:PL 1/1:0,361:361:99:10829,1074,0
|
|
|
2191 NC_002945.4 1750007 . C G 9816.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.995;ClippingRankSum=0.000;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.21;ReadPosRankSum=-0.348;SOR=0.260 GT:AD:DP:GQ:PL 1/1:1,324:325:99:9845,961,0
|
|
|
2192 NC_002945.4 1776339 . G A 7668.77 . AC=2;AF=1.00;AN=2;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.94;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,265:265:99:7697,789,0
|
|
|
2193 NC_002945.4 1803035 . C T 8042.77 . AC=2;AF=1.00;AN=2;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.72;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,280:280:99:8071,835,0
|
|
|
2194 NC_002945.4 1833330 . A G 8001.77 . AC=2;AF=1.00;AN=2;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.78;SOR=0.823 GT:AD:DP:GQ:PL 1/1:0,260:260:99:8030,776,0
|
|
|
2195 NC_002945.4 1865339 . T G 106.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.576;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=140.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-4.814;SOR=6.664 GT:AD:DP:GQ:PL 0/1:51,27:78:99:135,0,1193
|
|
|
2196 NC_002945.4 1869365 . G C 37.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-0.674;SOR=0.693 GT:AD:DP:GQ:PL 0/1:6,2:8:66:66,0,366
|
|
|
2197 NC_002945.4 1871246 . C A 6579.77 . AC=2;AF=1.00;AN=2;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.90;SOR=1.321 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6608,598,0
|
|
|
2198 NC_002945.4 1878223 . G A 7787.77 . AC=2;AF=1.00;AN=2;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.63;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,272:272:99:7816,812,0
|
|
|
2199 NC_002945.4 1880869 . C T 9831.77 . AC=2;AF=1.00;AN=2;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.25;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,348:348:99:9860,1038,0
|
|
|
2200 NC_002945.4 1915461 . G C 5888.77 . AC=2;AF=1.00;AN=2;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.27;SOR=1.988 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5917,529,0
|
|
|
2201 NC_002945.4 1915936 . A G 8092.77 . AC=2;AF=1.00;AN=2;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.08;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,269:269:99:8121,799,0
|
|
|
2202 NC_002945.4 1920100 . T C 9802.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.973;ClippingRankSum=0.000;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.63;ReadPosRankSum=-0.502;SOR=0.380 GT:AD:DP:GQ:PL 1/1:1,319:320:99:9831,946,0
|
|
|
2203 NC_002945.4 1932972 . A G 5515.77 . AC=2;AF=1.00;AN=2;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.23;SOR=2.542 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5544,495,0
|
|
|
2204 NC_002945.4 1957978 . T G 6398.77 . AC=2;AF=1.00;AN=2;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.95;SOR=0.878 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6427,660,0
|
|
|
2205 NC_002945.4 1958977 . A T 6372.77 . AC=2;AF=1.00;AN=2;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.82;SOR=1.342 GT:AD:DP:GQ:PL 1/1:0,183:183:99:6401,545,0
|
|
|
2206 NC_002945.4 1961656 . G A 6461.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.923;ClippingRankSum=0.000;DP=223;ExcessHet=3.0103;FS=3.271;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.98;ReadPosRankSum=-0.541;SOR=0.428 GT:AD:DP:GQ:PL 1/1:1,222:223:99:6490,653,0
|
|
|
2207 NC_002945.4 1971992 . N . . . . GT ./.
|
|
|
2208 NC_002945.4 1971993 . N . . . . GT ./.
|
|
|
2209 NC_002945.4 1971994 . N . . . . GT ./.
|
|
|
2210 NC_002945.4 1971995 . N . . . . GT ./.
|
|
|
2211 NC_002945.4 1971996 . N . . . . GT ./.
|
|
|
2212 NC_002945.4 1971997 . N . . . . GT ./.
|
|
|
2213 NC_002945.4 1986855 . N . . . . GT ./.
|
|
|
2214 NC_002945.4 1986856 . N . . . . GT ./.
|
|
|
2215 NC_002945.4 1986857 . N . . . . GT ./.
|
|
|
2216 NC_002945.4 1986858 . N . . . . GT ./.
|
|
|
2217 NC_002945.4 1986859 . N . . . . GT ./.
|
|
|
2218 NC_002945.4 1986860 . N . . . . GT ./.
|
|
|
2219 NC_002945.4 1986861 . N . . . . GT ./.
|
|
|
2220 NC_002945.4 1986862 . N . . . . GT ./.
|
|
|
2221 NC_002945.4 1986863 . N . . . . GT ./.
|
|
|
2222 NC_002945.4 1986864 . N . . . . GT ./.
|
|
|
2223 NC_002945.4 1986865 . N . . . . GT ./.
|
|
|
2224 NC_002945.4 1986866 . N . . . . GT ./.
|
|
|
2225 NC_002945.4 1986867 . N . . . . GT ./.
|
|
|
2226 NC_002945.4 1986868 . N . . . . GT ./.
|
|
|
2227 NC_002945.4 1986869 . N . . . . GT ./.
|
|
|
2228 NC_002945.4 1986870 . N . . . . GT ./.
|
|
|
2229 NC_002945.4 1986871 . N . . . . GT ./.
|
|
|
2230 NC_002945.4 1986872 . N . . . . GT ./.
|
|
|
2231 NC_002945.4 1986873 . N . . . . GT ./.
|
|
|
2232 NC_002945.4 1986874 . N . . . . GT ./.
|
|
|
2233 NC_002945.4 1986875 . N . . . . GT ./.
|
|
|
2234 NC_002945.4 1986876 . N . . . . GT ./.
|
|
|
2235 NC_002945.4 1986877 . N . . . . GT ./.
|
|
|
2236 NC_002945.4 1986878 . N . . . . GT ./.
|
|
|
2237 NC_002945.4 1986879 . N . . . . GT ./.
|
|
|
2238 NC_002945.4 1986880 . N . . . . GT ./.
|
|
|
2239 NC_002945.4 1986881 . N . . . . GT ./.
|
|
|
2240 NC_002945.4 1986882 . N . . . . GT ./.
|
|
|
2241 NC_002945.4 1986883 . N . . . . GT ./.
|
|
|
2242 NC_002945.4 1986884 . N . . . . GT ./.
|
|
|
2243 NC_002945.4 1986885 . N . . . . GT ./.
|
|
|
2244 NC_002945.4 1986886 . N . . . . GT ./.
|
|
|
2245 NC_002945.4 1986887 . N . . . . GT ./.
|
|
|
2246 NC_002945.4 1986888 . N . . . . GT ./.
|
|
|
2247 NC_002945.4 1986889 . N . . . . GT ./.
|
|
|
2248 NC_002945.4 1986890 . N . . . . GT ./.
|
|
|
2249 NC_002945.4 1986891 . N . . . . GT ./.
|
|
|
2250 NC_002945.4 1986892 . N . . . . GT ./.
|
|
|
2251 NC_002945.4 1986893 . N . . . . GT ./.
|
|
|
2252 NC_002945.4 1986894 . N . . . . GT ./.
|
|
|
2253 NC_002945.4 1986895 . N . . . . GT ./.
|
|
|
2254 NC_002945.4 1986896 . N . . . . GT ./.
|
|
|
2255 NC_002945.4 1986897 . N . . . . GT ./.
|
|
|
2256 NC_002945.4 1986898 . N . . . . GT ./.
|
|
|
2257 NC_002945.4 1986899 . N . . . . GT ./.
|
|
|
2258 NC_002945.4 1986900 . N . . . . GT ./.
|
|
|
2259 NC_002945.4 1986901 . N . . . . GT ./.
|
|
|
2260 NC_002945.4 1986902 . N . . . . GT ./.
|
|
|
2261 NC_002945.4 1986903 . N . . . . GT ./.
|
|
|
2262 NC_002945.4 1986904 . N . . . . GT ./.
|
|
|
2263 NC_002945.4 1986905 . N . . . . GT ./.
|
|
|
2264 NC_002945.4 1986906 . N . . . . GT ./.
|
|
|
2265 NC_002945.4 1986907 . N . . . . GT ./.
|
|
|
2266 NC_002945.4 1986908 . N . . . . GT ./.
|
|
|
2267 NC_002945.4 1986909 . N . . . . GT ./.
|
|
|
2268 NC_002945.4 1986910 . N . . . . GT ./.
|
|
|
2269 NC_002945.4 1986911 . N . . . . GT ./.
|
|
|
2270 NC_002945.4 1986912 . N . . . . GT ./.
|
|
|
2271 NC_002945.4 1986913 . N . . . . GT ./.
|
|
|
2272 NC_002945.4 1986914 . N . . . . GT ./.
|
|
|
2273 NC_002945.4 1986915 . N . . . . GT ./.
|
|
|
2274 NC_002945.4 1986916 . N . . . . GT ./.
|
|
|
2275 NC_002945.4 1986917 . N . . . . GT ./.
|
|
|
2276 NC_002945.4 1986918 . N . . . . GT ./.
|
|
|
2277 NC_002945.4 1986919 . N . . . . GT ./.
|
|
|
2278 NC_002945.4 1986920 . N . . . . GT ./.
|
|
|
2279 NC_002945.4 1986921 . N . . . . GT ./.
|
|
|
2280 NC_002945.4 1986922 . N . . . . GT ./.
|
|
|
2281 NC_002945.4 1986923 . N . . . . GT ./.
|
|
|
2282 NC_002945.4 1986924 . N . . . . GT ./.
|
|
|
2283 NC_002945.4 1986925 . N . . . . GT ./.
|
|
|
2284 NC_002945.4 1986926 . N . . . . GT ./.
|
|
|
2285 NC_002945.4 1986927 . N . . . . GT ./.
|
|
|
2286 NC_002945.4 1986928 . N . . . . GT ./.
|
|
|
2287 NC_002945.4 1986929 . N . . . . GT ./.
|
|
|
2288 NC_002945.4 1986930 . N . . . . GT ./.
|
|
|
2289 NC_002945.4 1986931 . N . . . . GT ./.
|
|
|
2290 NC_002945.4 1986932 . N . . . . GT ./.
|
|
|
2291 NC_002945.4 1986933 . N . . . . GT ./.
|
|
|
2292 NC_002945.4 1986934 . N . . . . GT ./.
|
|
|
2293 NC_002945.4 1986935 . N . . . . GT ./.
|
|
|
2294 NC_002945.4 1986936 . N . . . . GT ./.
|
|
|
2295 NC_002945.4 1986937 . N . . . . GT ./.
|
|
|
2296 NC_002945.4 1986938 . N . . . . GT ./.
|
|
|
2297 NC_002945.4 1986939 . N . . . . GT ./.
|
|
|
2298 NC_002945.4 1986940 . N . . . . GT ./.
|
|
|
2299 NC_002945.4 1986941 . N . . . . GT ./.
|
|
|
2300 NC_002945.4 1986942 . N . . . . GT ./.
|
|
|
2301 NC_002945.4 1986943 . N . . . . GT ./.
|
|
|
2302 NC_002945.4 1986944 . N . . . . GT ./.
|
|
|
2303 NC_002945.4 1986945 . N . . . . GT ./.
|
|
|
2304 NC_002945.4 1986946 . N . . . . GT ./.
|
|
|
2305 NC_002945.4 1986947 . N . . . . GT ./.
|
|
|
2306 NC_002945.4 1986948 . N . . . . GT ./.
|
|
|
2307 NC_002945.4 1986949 . N . . . . GT ./.
|
|
|
2308 NC_002945.4 1986950 . N . . . . GT ./.
|
|
|
2309 NC_002945.4 1986951 . N . . . . GT ./.
|
|
|
2310 NC_002945.4 1986952 . N . . . . GT ./.
|
|
|
2311 NC_002945.4 1986953 . N . . . . GT ./.
|
|
|
2312 NC_002945.4 1986954 . N . . . . GT ./.
|
|
|
2313 NC_002945.4 1986955 . N . . . . GT ./.
|
|
|
2314 NC_002945.4 1986956 . N . . . . GT ./.
|
|
|
2315 NC_002945.4 1986957 . N . . . . GT ./.
|
|
|
2316 NC_002945.4 1986958 . N . . . . GT ./.
|
|
|
2317 NC_002945.4 1986959 . N . . . . GT ./.
|
|
|
2318 NC_002945.4 1986960 . N . . . . GT ./.
|
|
|
2319 NC_002945.4 1986961 . N . . . . GT ./.
|
|
|
2320 NC_002945.4 1986962 . N . . . . GT ./.
|
|
|
2321 NC_002945.4 1986963 . N . . . . GT ./.
|
|
|
2322 NC_002945.4 1986964 . N . . . . GT ./.
|
|
|
2323 NC_002945.4 1986965 . N . . . . GT ./.
|
|
|
2324 NC_002945.4 1986966 . N . . . . GT ./.
|
|
|
2325 NC_002945.4 1986967 . N . . . . GT ./.
|
|
|
2326 NC_002945.4 1986968 . N . . . . GT ./.
|
|
|
2327 NC_002945.4 1986969 . N . . . . GT ./.
|
|
|
2328 NC_002945.4 1986970 . N . . . . GT ./.
|
|
|
2329 NC_002945.4 1986971 . N . . . . GT ./.
|
|
|
2330 NC_002945.4 1986972 . N . . . . GT ./.
|
|
|
2331 NC_002945.4 1986973 . N . . . . GT ./.
|
|
|
2332 NC_002945.4 1986974 . N . . . . GT ./.
|
|
|
2333 NC_002945.4 1986975 . N . . . . GT ./.
|
|
|
2334 NC_002945.4 1986976 . N . . . . GT ./.
|
|
|
2335 NC_002945.4 1996036 . G A 1074.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.805;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=34.67;ReadPosRankSum=1.701;SOR=5.486 GT:AD:DP:GQ:PL 1/1:1,30:31:82:1103,82,0
|
|
|
2336 NC_002945.4 2002061 . A G 6500.77 . AC=2;AF=1.00;AN=2;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.96;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6529,629,0
|
|
|
2337 NC_002945.4 2007303 . C G 9314.77 . AC=2;AF=1.00;AN=2;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.81;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,335:335:99:9343,987,0
|
|
|
2338 NC_002945.4 2024890 . T C 7058.77 . AC=2;AF=1.00;AN=2;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.17;SOR=1.692 GT:AD:DP:GQ:PL 1/1:0,234:234:99:7087,695,0
|
|
|
2339 NC_002945.4 2027869 . G A 6404.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.799;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=3.533;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=31.55;ReadPosRankSum=1.940;SOR=0.618 GT:AD:DP:GQ:PL 1/1:1,202:203:99:6433,595,0
|
|
|
2340 NC_002945.4 2039619 . A G 8259.77 . AC=2;AF=1.00;AN=2;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.94;SOR=1.422 GT:AD:DP:GQ:PL 1/1:0,267:267:99:8288,796,0
|
|
|
2341 NC_002945.4 2046459 . T G 112.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-7.187;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=62.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=2.589;SOR=5.633 GT:AD:DP:GQ:PL 0/1:68,42:110:99:141,0,1053
|
|
|
2342 NC_002945.4 2046882 . C T 8099.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=-1.983;ClippingRankSum=0.000;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.52;ReadPosRankSum=1.080;SOR=0.250 GT:AD:DP:GQ:PL 1/1:1,283:284:99:8128,802,0
|
|
|
2343 NC_002945.4 2049171 . A G 4143.77 . AC=2;AF=1.00;AN=2;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.58;SOR=1.253 GT:AD:DP:GQ:PL 1/1:0,109:109:99:4172,320,0
|
|
|
2344 NC_002945.4 2050664 . C T 7679.77 . AC=2;AF=1.00;AN=2;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.09;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,264:264:99:7708,786,0
|
|
|
2345 NC_002945.4 2057553 . G A 4693.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=6.076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.45;ReadPosRankSum=-0.087;SOR=0.066 GT:AD:DP:GQ:PL 1/1:3,168:171:99:4722,471,0
|
|
|
2346 NC_002945.4 2059249 . G A 10709.77 . AC=2;AF=1.00;AN=2;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.96;SOR=0.698 GT:AD:DP:GQ:PL 1/1:0,383:383:99:10738,1139,0
|
|
|
2347 NC_002945.4 2059920 . A G 8213.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.891;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=31.47;ReadPosRankSum=2.576;SOR=0.308 GT:AD:DP:GQ:PL 1/1:1,260:261:99:8242,771,0
|
|
|
2348 NC_002945.4 2060304 . T C 4795.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.90;MQRankSum=0.000;QD=29.97;ReadPosRankSum=4.523;SOR=0.718 GT:AD:DP:GQ:PL 1/1:2,158:160:99:4824,427,0
|
|
|
2349 NC_002945.4 2075405 . C T 7577.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=2.076;ClippingRankSum=0.000;DP=271;ExcessHet=3.0103;FS=3.124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.96;ReadPosRankSum=-0.386;SOR=0.318 GT:AD:DP:GQ:PL 1/1:1,270:271:99:7606,797,0
|
|
|
2350 NC_002945.4 2079345 . T C 7464.77 . AC=2;AF=1.00;AN=2;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.62;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,252:252:99:7493,750,0
|
|
|
2351 NC_002945.4 2089475 . C T 7606.77 . AC=2;AF=1.00;AN=2;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.30;SOR=1.378 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7635,724,0
|
|
|
2352 NC_002945.4 2099043 . T C 5481.77 . AC=2;AF=1.00;AN=2;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.44;SOR=2.462 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5510,505,0
|
|
|
2353 NC_002945.4 2108042 . G A 5119.77 . AC=2;AF=1.00;AN=2;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.26;SOR=0.800 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5148,517,0
|
|
|
2354 NC_002945.4 2140772 . N . . . . GT ./.
|
|
|
2355 NC_002945.4 2140773 . N . . . . GT ./.
|
|
|
2356 NC_002945.4 2145868 . T C 8934.77 . AC=2;AF=1.00;AN=2;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.29;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,295:295:99:8963,882,0
|
|
|
2357 NC_002945.4 2150565 . G A 8639.77 . AC=2;AF=1.00;AN=2;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.90;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,299:299:99:8668,888,0
|
|
|
2358 NC_002945.4 2186489 . C T 9516.77 . AC=2;AF=1.00;AN=2;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.28;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,325:325:99:9545,970,0
|
|
|
2359 NC_002945.4 2215255 . G A 4313.77 . AC=2;AF=1.00;AN=2;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.19;SOR=4.047 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4342,392,0
|
|
|
2360 NC_002945.4 2222708 . C G 7090.77 . AC=2;AF=1.00;AN=2;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.38;SOR=1.242 GT:AD:DP:GQ:PL 1/1:0,219:219:99:7119,652,0
|
|
|
2361 NC_002945.4 2244454 . C G 5424.77 . AC=2;AF=1.00;AN=2;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.55;SOR=0.850 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5453,565,0
|
|
|
2362 NC_002945.4 2246992 . C G 7949.77 . AC=2;AF=1.00;AN=2;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.11;SOR=0.964 GT:AD:DP:GQ:PL 1/1:0,264:264:99:7978,787,0
|
|
|
2363 NC_002945.4 2249617 . A G 7430.77 . AC=2;AF=1.00;AN=2;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.62;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,235:235:99:7459,703,0
|
|
|
2364 NC_002945.4 2256653 . C A 3996.77 . AC=2;AF=1.00;AN=2;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.61;SOR=0.867 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4025,399,0
|
|
|
2365 NC_002945.4 2257546 . C A 5988.77 . AC=2;AF=1.00;AN=2;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.79;SOR=1.333 GT:AD:DP:GQ:PL 1/1:0,201:201:99:6017,590,0
|
|
|
2366 NC_002945.4 2283200 . A G 7108.77 . AC=2;AF=1.00;AN=2;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.50;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,241:241:99:7137,717,0
|
|
|
2367 NC_002945.4 2283218 . C G 10440.77 . AC=2;AF=1.00;AN=2;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.02;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,233:233:99:10469,701,0
|
|
|
2368 NC_002945.4 2283220 . A G 10485.77 . AC=2;AF=1.00;AN=2;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.06;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,233:233:99:10514,704,0
|
|
|
2369 NC_002945.4 2283227 . A G 10834.77 . AC=2;AF=1.00;AN=2;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.53;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,239:239:99:10863,728,0
|
|
|
2370 NC_002945.4 2283235 . G A 11042.77 . AC=2;AF=1.00;AN=2;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.99;SOR=0.710 GT:AD:DP:GQ:PL 1/1:0,234:234:99:11071,744,0
|
|
|
2371 NC_002945.4 2283236 . G C 11042.77 . AC=2;AF=1.00;AN=2;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.60;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,240:240:99:11071,744,0
|
|
|
2372 NC_002945.4 2283350 . C T 8786.77 . AC=2;AF=1.00;AN=2;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.96;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,197:197:99:8815,593,0
|
|
|
2373 NC_002945.4 2283353 . G T 8786.77 . AC=2;AF=1.00;AN=2;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.55;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,194:194:99:8815,593,0
|
|
|
2374 NC_002945.4 2283355 . G C 8701.77 . AC=2;AF=1.00;AN=2;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.69;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,194:194:99:8730,584,0
|
|
|
2375 NC_002945.4 2283362 . A T 8701.77 . AC=2;AF=1.00;AN=2;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.70;SOR=0.861 GT:AD:DP:GQ:PL 1/1:0,191:191:99:8730,584,0
|
|
|
2376 NC_002945.4 2283371 . C A 8576.77 . AC=2;AF=1.00;AN=2;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.95;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,192:192:99:8605,577,0
|
|
|
2377 NC_002945.4 2284754 . G C 4657.77 . AC=2;AF=1.00;AN=2;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.55;QD=28.32;SOR=2.235 GT:AD:DP:GQ:PL 1/1:0,103:103:99:4686,316,0
|
|
|
2378 NC_002945.4 2317251 . C T 7010.77 . AC=2;AF=1.00;AN=2;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.88;SOR=0.720 GT:AD:DP:GQ:PL 1/1:0,227:227:99:7039,679,0
|
|
|
2379 NC_002945.4 2325841 . N . . . . GT ./.
|
|
|
2380 NC_002945.4 2325842 . N . . . . GT ./.
|
|
|
2381 NC_002945.4 2325843 . N . . . . GT ./.
|
|
|
2382 NC_002945.4 2325844 . N . . . . GT ./.
|
|
|
2383 NC_002945.4 2326260 . N . . . . GT ./.
|
|
|
2384 NC_002945.4 2326261 . N . . . . GT ./.
|
|
|
2385 NC_002945.4 2326262 . N . . . . GT ./.
|
|
|
2386 NC_002945.4 2326263 . N . . . . GT ./.
|
|
|
2387 NC_002945.4 2326264 . N . . . . GT ./.
|
|
|
2388 NC_002945.4 2326265 . N . . . . GT ./.
|
|
|
2389 NC_002945.4 2326266 . N . . . . GT ./.
|
|
|
2390 NC_002945.4 2333994 . T C 6298.77 . AC=2;AF=1.00;AN=2;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.37;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,222:222:99:6327,658,0
|
|
|
2391 NC_002945.4 2338765 . G A 7208.77 . AC=2;AF=1.00;AN=2;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.38;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,254:254:99:7237,758,0
|
|
|
2392 NC_002945.4 2339770 . A G 6564.77 . AC=2;AF=1.00;AN=2;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.34;SOR=0.944 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6593,604,0
|
|
|
2393 NC_002945.4 2358298 . T C 7410.77 . AC=2;AF=1.00;AN=2;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.27;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,237:237:99:7439,707,0
|
|
|
2394 NC_002945.4 2361398 . T C 5974.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=31.78;ReadPosRankSum=-0.550;SOR=0.368 GT:AD:DP:GQ:PL 1/1:1,187:188:99:6003,549,0
|
|
|
2395 NC_002945.4 2372329 . N . . . . GT ./.
|
|
|
2396 NC_002945.4 2372330 . N . . . . GT ./.
|
|
|
2397 NC_002945.4 2372331 . N . . . . GT ./.
|
|
|
2398 NC_002945.4 2372332 . N . . . . GT ./.
|
|
|
2399 NC_002945.4 2372333 . N . . . . GT ./.
|
|
|
2400 NC_002945.4 2372334 . N . . . . GT ./.
|
|
|
2401 NC_002945.4 2372335 . N . . . . GT ./.
|
|
|
2402 NC_002945.4 2372336 . N . . . . GT ./.
|
|
|
2403 NC_002945.4 2372337 . N . . . . GT ./.
|
|
|
2404 NC_002945.4 2372338 . N . . . . GT ./.
|
|
|
2405 NC_002945.4 2372339 . N . . . . GT ./.
|
|
|
2406 NC_002945.4 2372340 . N . . . . GT ./.
|
|
|
2407 NC_002945.4 2372341 . N . . . . GT ./.
|
|
|
2408 NC_002945.4 2372342 . N . . . . GT ./.
|
|
|
2409 NC_002945.4 2372343 . N . . . . GT ./.
|
|
|
2410 NC_002945.4 2372344 . N . . . . GT ./.
|
|
|
2411 NC_002945.4 2372345 . N . . . . GT ./.
|
|
|
2412 NC_002945.4 2372346 . N . . . . GT ./.
|
|
|
2413 NC_002945.4 2372347 . N . . . . GT ./.
|
|
|
2414 NC_002945.4 2372348 . N . . . . GT ./.
|
|
|
2415 NC_002945.4 2372349 . N . . . . GT ./.
|
|
|
2416 NC_002945.4 2372350 . N . . . . GT ./.
|
|
|
2417 NC_002945.4 2372351 . N . . . . GT ./.
|
|
|
2418 NC_002945.4 2372352 . N . . . . GT ./.
|
|
|
2419 NC_002945.4 2372353 . N . . . . GT ./.
|
|
|
2420 NC_002945.4 2372354 . N . . . . GT ./.
|
|
|
2421 NC_002945.4 2372355 . N . . . . GT ./.
|
|
|
2422 NC_002945.4 2372356 . N . . . . GT ./.
|
|
|
2423 NC_002945.4 2372357 . N . . . . GT ./.
|
|
|
2424 NC_002945.4 2372358 . N . . . . GT ./.
|
|
|
2425 NC_002945.4 2372359 . N . . . . GT ./.
|
|
|
2426 NC_002945.4 2372360 . N . . . . GT ./.
|
|
|
2427 NC_002945.4 2372361 . N . . . . GT ./.
|
|
|
2428 NC_002945.4 2375846 . G A 4244.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=3.208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=23.58;ReadPosRankSum=-0.314;SOR=0.385 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4273,504,0
|
|
|
2429 NC_002945.4 2378324 . C T 6501.77 . AC=2;AF=1.00;AN=2;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.55;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,236:236:99:6530,701,0
|
|
|
2430 NC_002945.4 2381437 . C A 9016.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.985;ClippingRankSum=0.000;DP=304;ExcessHet=3.0103;FS=3.112;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.76;ReadPosRankSum=0.885;SOR=0.308 GT:AD:DP:GQ:PL 1/1:1,302:303:99:9045,895,0
|
|
|
2431 NC_002945.4 2397934 . C T 2299.77 . AC=2;AF=1.00;AN=2;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.08;SOR=2.568 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2328,218,0
|
|
|
2432 NC_002945.4 2408931 . N . . . . GT ./.
|
|
|
2433 NC_002945.4 2408951 . N . . . . GT ./.
|
|
|
2434 NC_002945.4 2408952 . N . . . . GT ./.
|
|
|
2435 NC_002945.4 2408953 . N . . . . GT ./.
|
|
|
2436 NC_002945.4 2408954 . N . . . . GT ./.
|
|
|
2437 NC_002945.4 2408955 . N . . . . GT ./.
|
|
|
2438 NC_002945.4 2408956 . N . . . . GT ./.
|
|
|
2439 NC_002945.4 2408957 . N . . . . GT ./.
|
|
|
2440 NC_002945.4 2408958 . N . . . . GT ./.
|
|
|
2441 NC_002945.4 2408959 . N . . . . GT ./.
|
|
|
2442 NC_002945.4 2408960 . N . . . . GT ./.
|
|
|
2443 NC_002945.4 2408961 . N . . . . GT ./.
|
|
|
2444 NC_002945.4 2408962 . N . . . . GT ./.
|
|
|
2445 NC_002945.4 2408963 . N . . . . GT ./.
|
|
|
2446 NC_002945.4 2408964 . N . . . . GT ./.
|
|
|
2447 NC_002945.4 2408965 . N . . . . GT ./.
|
|
|
2448 NC_002945.4 2408966 . N . . . . GT ./.
|
|
|
2449 NC_002945.4 2408967 . N . . . . GT ./.
|
|
|
2450 NC_002945.4 2408968 . N . . . . GT ./.
|
|
|
2451 NC_002945.4 2408969 . N . . . . GT ./.
|
|
|
2452 NC_002945.4 2408970 . N . . . . GT ./.
|
|
|
2453 NC_002945.4 2408971 . N . . . . GT ./.
|
|
|
2454 NC_002945.4 2408972 . N . . . . GT ./.
|
|
|
2455 NC_002945.4 2408973 . N . . . . GT ./.
|
|
|
2456 NC_002945.4 2408974 . N . . . . GT ./.
|
|
|
2457 NC_002945.4 2408975 . N . . . . GT ./.
|
|
|
2458 NC_002945.4 2408976 . N . . . . GT ./.
|
|
|
2459 NC_002945.4 2408977 . N . . . . GT ./.
|
|
|
2460 NC_002945.4 2408978 . N . . . . GT ./.
|
|
|
2461 NC_002945.4 2408979 . N . . . . GT ./.
|
|
|
2462 NC_002945.4 2408980 . N . . . . GT ./.
|
|
|
2463 NC_002945.4 2408981 . N . . . . GT ./.
|
|
|
2464 NC_002945.4 2408982 . N . . . . GT ./.
|
|
|
2465 NC_002945.4 2408983 . N . . . . GT ./.
|
|
|
2466 NC_002945.4 2408984 . N . . . . GT ./.
|
|
|
2467 NC_002945.4 2408985 . N . . . . GT ./.
|
|
|
2468 NC_002945.4 2408986 . N . . . . GT ./.
|
|
|
2469 NC_002945.4 2408987 . N . . . . GT ./.
|
|
|
2470 NC_002945.4 2412437 . G A 5042.77 . AC=2;AF=1.00;AN=2;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.86;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5071,537,0
|
|
|
2471 NC_002945.4 2418267 . G A 6239.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.771;ClippingRankSum=0.000;DP=214;ExcessHet=3.0103;FS=3.200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.57;ReadPosRankSum=1.035;SOR=0.377 GT:AD:DP:GQ:PL 1/1:1,210:211:99:6268,616,0
|
|
|
2472 NC_002945.4 2422964 . G A 966.77 . AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=34.83;QD=34.53;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,28:28:84:995,84,0
|
|
|
2473 NC_002945.4 2423049 . T G 896.77 . AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=33.65;QD=32.55;SOR=1.893 GT:AD:DP:GQ:PL 1/1:0,25:25:75:925,75,0
|
|
|
2474 NC_002945.4 2425939 . G A 7090.77 . AC=2;AF=1.00;AN=2;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.06;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7119,726,0
|
|
|
2475 NC_002945.4 2426072 . G A 7305.77 . AC=2;AF=1.00;AN=2;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.88;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,262:262:99:7334,770,0
|
|
|
2476 NC_002945.4 2458252 . C T 9192.77 . AC=2;AF=1.00;AN=2;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.91;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,318:318:99:9221,948,0
|
|
|
2477 NC_002945.4 2479007 . C T 8049.77 . AC=2;AF=1.00;AN=2;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.06;SOR=0.760 GT:AD:DP:GQ:PL 1/1:0,277:277:99:8078,826,0
|
|
|
2478 NC_002945.4 2497022 . C G 10187.77 . AC=2;AF=1.00;AN=2;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.64;SOR=1.068 GT:AD:DP:GQ:PL 1/1:0,322:322:99:10216,960,0
|
|
|
2479 NC_002945.4 2506199 . A C 8495.77 . AC=2;AF=1.00;AN=2;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.71;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,286:286:99:8524,851,0
|
|
|
2480 NC_002945.4 2508626 . G T 7842.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=2.633;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=7.758;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.26;ReadPosRankSum=-0.424;SOR=0.806 GT:AD:DP:GQ:PL 1/1:2,266:268:99:7871,778,0
|
|
|
2481 NC_002945.4 2512809 . A C 8540.77 . AC=2;AF=1.00;AN=2;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.29;SOR=0.980 GT:AD:DP:GQ:PL 1/1:0,282:282:99:8569,840,0
|
|
|
2482 NC_002945.4 2513801 . C A 4793.77 . AC=2;AF=1.00;AN=2;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.05;SOR=1.638 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4822,487,0
|
|
|
2483 NC_002945.4 2515471 . N . . . . GT ./.
|
|
|
2484 NC_002945.4 2524942 . G A 5458.77 . AC=2;AF=1.00;AN=2;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.83;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5487,542,0
|
|
|
2485 NC_002945.4 2528517 . T C 9471.77 . AC=2;AF=1.00;AN=2;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.16;SOR=0.857 GT:AD:DP:GQ:PL 1/1:0,314:314:99:9500,935,0
|
|
|
2486 NC_002945.4 2529413 . G C 7588.77 . AC=2;AF=1.00;AN=2;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.43;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,234:234:99:7617,700,0
|
|
|
2487 NC_002945.4 2532958 . G A 6695.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;ClippingRankSum=0.000;DP=245;ExcessHet=3.0103;FS=11.724;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.67;ReadPosRankSum=-0.927;SOR=0.818 GT:AD:DP:GQ:PL 1/1:3,239:242:99:6724,681,0
|
|
|
2488 NC_002945.4 2537125 . T C 6239.77 . AC=2;AF=1.00;AN=2;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.75;SOR=1.117 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6268,643,0
|
|
|
2489 NC_002945.4 2665769 . N . . . . GT ./.
|
|
|
2490 NC_002945.4 2665770 . N . . . . GT ./.
|
|
|
2491 NC_002945.4 2665771 . N . . . . GT ./.
|
|
|
2492 NC_002945.4 2665772 . N . . . . GT ./.
|
|
|
2493 NC_002945.4 2665773 . N . . . . GT ./.
|
|
|
2494 NC_002945.4 2665774 . N . . . . GT ./.
|
|
|
2495 NC_002945.4 2665775 . N . . . . GT ./.
|
|
|
2496 NC_002945.4 2665776 . N . . . . GT ./.
|
|
|
2497 NC_002945.4 2665777 . N . . . . GT ./.
|
|
|
2498 NC_002945.4 2665778 . N . . . . GT ./.
|
|
|
2499 NC_002945.4 2665779 . N . . . . GT ./.
|
|
|
2500 NC_002945.4 2665780 . N . . . . GT ./.
|
|
|
2501 NC_002945.4 2665781 . N . . . . GT ./.
|
|
|
2502 NC_002945.4 2665782 . N . . . . GT ./.
|
|
|
2503 NC_002945.4 2665783 . N . . . . GT ./.
|
|
|
2504 NC_002945.4 2665784 . N . . . . GT ./.
|
|
|
2505 NC_002945.4 2665785 . N . . . . GT ./.
|
|
|
2506 NC_002945.4 2665786 . N . . . . GT ./.
|
|
|
2507 NC_002945.4 2665787 . N . . . . GT ./.
|
|
|
2508 NC_002945.4 2665788 . N . . . . GT ./.
|
|
|
2509 NC_002945.4 2665789 . N . . . . GT ./.
|
|
|
2510 NC_002945.4 2665790 . N . . . . GT ./.
|
|
|
2511 NC_002945.4 2665791 . N . . . . GT ./.
|
|
|
2512 NC_002945.4 2665792 . N . . . . GT ./.
|
|
|
2513 NC_002945.4 2665793 . N . . . . GT ./.
|
|
|
2514 NC_002945.4 2665794 . N . . . . GT ./.
|
|
|
2515 NC_002945.4 2665795 . N . . . . GT ./.
|
|
|
2516 NC_002945.4 2665796 . N . . . . GT ./.
|
|
|
2517 NC_002945.4 2665797 . N . . . . GT ./.
|
|
|
2518 NC_002945.4 2665798 . N . . . . GT ./.
|
|
|
2519 NC_002945.4 2665799 . N . . . . GT ./.
|
|
|
2520 NC_002945.4 2665800 . N . . . . GT ./.
|
|
|
2521 NC_002945.4 2665801 . N . . . . GT ./.
|
|
|
2522 NC_002945.4 2665802 . N . . . . GT ./.
|
|
|
2523 NC_002945.4 2665803 . N . . . . GT ./.
|
|
|
2524 NC_002945.4 2665804 . N . . . . GT ./.
|
|
|
2525 NC_002945.4 2665805 . N . . . . GT ./.
|
|
|
2526 NC_002945.4 2667489 . T C 8437.77 . AC=2;AF=1.00;AN=2;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.90;SOR=0.823 GT:AD:DP:GQ:PL 1/1:0,292:292:99:8466,869,0
|
|
|
2527 NC_002945.4 2755931 . T G 6960.77 . AC=2;AF=1.00;AN=2;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.47;SOR=1.509 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6989,621,0
|
|
|
2528 NC_002945.4 2773444 . G A 63.28 . AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=21.09;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:91,9,0
|
|
|
2529 NC_002945.4 2776121 . N . . . . GT ./.
|
|
|
2530 NC_002945.4 2776122 . N . . . . GT ./.
|
|
|
2531 NC_002945.4 2776123 . N . . . . GT ./.
|
|
|
2532 NC_002945.4 2776124 . N . . . . GT ./.
|
|
|
2533 NC_002945.4 2776125 . N . . . . GT ./.
|
|
|
2534 NC_002945.4 2776126 . N . . . . GT ./.
|
|
|
2535 NC_002945.4 2776127 . N . . . . GT ./.
|
|
|
2536 NC_002945.4 2776128 . N . . . . GT ./.
|
|
|
2537 NC_002945.4 2776129 . N . . . . GT ./.
|
|
|
2538 NC_002945.4 2776130 . N . . . . GT ./.
|
|
|
2539 NC_002945.4 2776139 . N . . . . GT ./.
|
|
|
2540 NC_002945.4 2776164 . N . . . . GT ./.
|
|
|
2541 NC_002945.4 2776165 . N . . . . GT ./.
|
|
|
2542 NC_002945.4 2776166 . N . . . . GT ./.
|
|
|
2543 NC_002945.4 2776167 . N . . . . GT ./.
|
|
|
2544 NC_002945.4 2776168 . N . . . . GT ./.
|
|
|
2545 NC_002945.4 2776169 . N . . . . GT ./.
|
|
|
2546 NC_002945.4 2776170 . N . . . . GT ./.
|
|
|
2547 NC_002945.4 2776171 . N . . . . GT ./.
|
|
|
2548 NC_002945.4 2776172 . N . . . . GT ./.
|
|
|
2549 NC_002945.4 2776173 . N . . . . GT ./.
|
|
|
2550 NC_002945.4 2776174 . N . . . . GT ./.
|
|
|
2551 NC_002945.4 2776175 . N . . . . GT ./.
|
|
|
2552 NC_002945.4 2776176 . N . . . . GT ./.
|
|
|
2553 NC_002945.4 2776177 . N . . . . GT ./.
|
|
|
2554 NC_002945.4 2776178 . N . . . . GT ./.
|
|
|
2555 NC_002945.4 2776179 . N . . . . GT ./.
|
|
|
2556 NC_002945.4 2776180 . N . . . . GT ./.
|
|
|
2557 NC_002945.4 2776181 . N . . . . GT ./.
|
|
|
2558 NC_002945.4 2776182 . N . . . . GT ./.
|
|
|
2559 NC_002945.4 2776183 . N . . . . GT ./.
|
|
|
2560 NC_002945.4 2776184 . N . . . . GT ./.
|
|
|
2561 NC_002945.4 2776185 . N . . . . GT ./.
|
|
|
2562 NC_002945.4 2776186 . N . . . . GT ./.
|
|
|
2563 NC_002945.4 2776187 . N . . . . GT ./.
|
|
|
2564 NC_002945.4 2776188 . N . . . . GT ./.
|
|
|
2565 NC_002945.4 2776189 . N . . . . GT ./.
|
|
|
2566 NC_002945.4 2776190 . N . . . . GT ./.
|
|
|
2567 NC_002945.4 2776191 . N . . . . GT ./.
|
|
|
2568 NC_002945.4 2776192 . N . . . . GT ./.
|
|
|
2569 NC_002945.4 2776193 . N . . . . GT ./.
|
|
|
2570 NC_002945.4 2776194 . N . . . . GT ./.
|
|
|
2571 NC_002945.4 2776195 . N . . . . GT ./.
|
|
|
2572 NC_002945.4 2776196 . N . . . . GT ./.
|
|
|
2573 NC_002945.4 2776197 . N . . . . GT ./.
|
|
|
2574 NC_002945.4 2776198 . N . . . . GT ./.
|
|
|
2575 NC_002945.4 2776199 . N . . . . GT ./.
|
|
|
2576 NC_002945.4 2776200 . N . . . . GT ./.
|
|
|
2577 NC_002945.4 2776201 . N . . . . GT ./.
|
|
|
2578 NC_002945.4 2776202 . N . . . . GT ./.
|
|
|
2579 NC_002945.4 2776203 . N . . . . GT ./.
|
|
|
2580 NC_002945.4 2776204 . N . . . . GT ./.
|
|
|
2581 NC_002945.4 2776205 . N . . . . GT ./.
|
|
|
2582 NC_002945.4 2776206 . N . . . . GT ./.
|
|
|
2583 NC_002945.4 2776207 . N . . . . GT ./.
|
|
|
2584 NC_002945.4 2776208 . N . . . . GT ./.
|
|
|
2585 NC_002945.4 2776209 . N . . . . GT ./.
|
|
|
2586 NC_002945.4 2776210 . N . . . . GT ./.
|
|
|
2587 NC_002945.4 2776211 . N . . . . GT ./.
|
|
|
2588 NC_002945.4 2776212 . N . . . . GT ./.
|
|
|
2589 NC_002945.4 2776213 . N . . . . GT ./.
|
|
|
2590 NC_002945.4 2776214 . N . . . . GT ./.
|
|
|
2591 NC_002945.4 2776215 . N . . . . GT ./.
|
|
|
2592 NC_002945.4 2776216 . N . . . . GT ./.
|
|
|
2593 NC_002945.4 2776217 . N . . . . GT ./.
|
|
|
2594 NC_002945.4 2776218 . N . . . . GT ./.
|
|
|
2595 NC_002945.4 2776219 . N . . . . GT ./.
|
|
|
2596 NC_002945.4 2776220 . N . . . . GT ./.
|
|
|
2597 NC_002945.4 2776221 . N . . . . GT ./.
|
|
|
2598 NC_002945.4 2776222 . N . . . . GT ./.
|
|
|
2599 NC_002945.4 2776223 . N . . . . GT ./.
|
|
|
2600 NC_002945.4 2776224 . N . . . . GT ./.
|
|
|
2601 NC_002945.4 2776225 . N . . . . GT ./.
|
|
|
2602 NC_002945.4 2776226 . N . . . . GT ./.
|
|
|
2603 NC_002945.4 2776227 . N . . . . GT ./.
|
|
|
2604 NC_002945.4 2776228 . N . . . . GT ./.
|
|
|
2605 NC_002945.4 2776229 . N . . . . GT ./.
|
|
|
2606 NC_002945.4 2776230 . N . . . . GT ./.
|
|
|
2607 NC_002945.4 2776231 . N . . . . GT ./.
|
|
|
2608 NC_002945.4 2776232 . N . . . . GT ./.
|
|
|
2609 NC_002945.4 2776233 . N . . . . GT ./.
|
|
|
2610 NC_002945.4 2776234 . N . . . . GT ./.
|
|
|
2611 NC_002945.4 2776235 . N . . . . GT ./.
|
|
|
2612 NC_002945.4 2776236 . N . . . . GT ./.
|
|
|
2613 NC_002945.4 2776237 . N . . . . GT ./.
|
|
|
2614 NC_002945.4 2776238 . N . . . . GT ./.
|
|
|
2615 NC_002945.4 2776239 . N . . . . GT ./.
|
|
|
2616 NC_002945.4 2776240 . N . . . . GT ./.
|
|
|
2617 NC_002945.4 2776241 . N . . . . GT ./.
|
|
|
2618 NC_002945.4 2776242 . N . . . . GT ./.
|
|
|
2619 NC_002945.4 2776243 . N . . . . GT ./.
|
|
|
2620 NC_002945.4 2776244 . N . . . . GT ./.
|
|
|
2621 NC_002945.4 2776245 . N . . . . GT ./.
|
|
|
2622 NC_002945.4 2776246 . N . . . . GT ./.
|
|
|
2623 NC_002945.4 2776247 . N . . . . GT ./.
|
|
|
2624 NC_002945.4 2776248 . N . . . . GT ./.
|
|
|
2625 NC_002945.4 2776249 . N . . . . GT ./.
|
|
|
2626 NC_002945.4 2776250 . N . . . . GT ./.
|
|
|
2627 NC_002945.4 2776251 . N . . . . GT ./.
|
|
|
2628 NC_002945.4 2776252 . N . . . . GT ./.
|
|
|
2629 NC_002945.4 2776253 . N . . . . GT ./.
|
|
|
2630 NC_002945.4 2776254 . N . . . . GT ./.
|
|
|
2631 NC_002945.4 2776255 . N . . . . GT ./.
|
|
|
2632 NC_002945.4 2776256 . N . . . . GT ./.
|
|
|
2633 NC_002945.4 2776257 . N . . . . GT ./.
|
|
|
2634 NC_002945.4 2776258 . N . . . . GT ./.
|
|
|
2635 NC_002945.4 2776259 . N . . . . GT ./.
|
|
|
2636 NC_002945.4 2776260 . N . . . . GT ./.
|
|
|
2637 NC_002945.4 2776261 . N . . . . GT ./.
|
|
|
2638 NC_002945.4 2776262 . N . . . . GT ./.
|
|
|
2639 NC_002945.4 2776263 . N . . . . GT ./.
|
|
|
2640 NC_002945.4 2776264 . N . . . . GT ./.
|
|
|
2641 NC_002945.4 2776265 . N . . . . GT ./.
|
|
|
2642 NC_002945.4 2776266 . N . . . . GT ./.
|
|
|
2643 NC_002945.4 2776267 . N . . . . GT ./.
|
|
|
2644 NC_002945.4 2776268 . N . . . . GT ./.
|
|
|
2645 NC_002945.4 2776269 . N . . . . GT ./.
|
|
|
2646 NC_002945.4 2776270 . N . . . . GT ./.
|
|
|
2647 NC_002945.4 2776271 . N . . . . GT ./.
|
|
|
2648 NC_002945.4 2776272 . N . . . . GT ./.
|
|
|
2649 NC_002945.4 2776273 . N . . . . GT ./.
|
|
|
2650 NC_002945.4 2776274 . N . . . . GT ./.
|
|
|
2651 NC_002945.4 2776275 . N . . . . GT ./.
|
|
|
2652 NC_002945.4 2776276 . N . . . . GT ./.
|
|
|
2653 NC_002945.4 2776277 . N . . . . GT ./.
|
|
|
2654 NC_002945.4 2776278 . N . . . . GT ./.
|
|
|
2655 NC_002945.4 2776279 . N . . . . GT ./.
|
|
|
2656 NC_002945.4 2776280 . N . . . . GT ./.
|
|
|
2657 NC_002945.4 2776281 . N . . . . GT ./.
|
|
|
2658 NC_002945.4 2776282 . N . . . . GT ./.
|
|
|
2659 NC_002945.4 2776283 . N . . . . GT ./.
|
|
|
2660 NC_002945.4 2776284 . N . . . . GT ./.
|
|
|
2661 NC_002945.4 2776285 . N . . . . GT ./.
|
|
|
2662 NC_002945.4 2776286 . N . . . . GT ./.
|
|
|
2663 NC_002945.4 2776287 . N . . . . GT ./.
|
|
|
2664 NC_002945.4 2776288 . N . . . . GT ./.
|
|
|
2665 NC_002945.4 2776289 . N . . . . GT ./.
|
|
|
2666 NC_002945.4 2776290 . N . . . . GT ./.
|
|
|
2667 NC_002945.4 2776291 . N . . . . GT ./.
|
|
|
2668 NC_002945.4 2776292 . N . . . . GT ./.
|
|
|
2669 NC_002945.4 2776293 . N . . . . GT ./.
|
|
|
2670 NC_002945.4 2776294 . N . . . . GT ./.
|
|
|
2671 NC_002945.4 2776295 . N . . . . GT ./.
|
|
|
2672 NC_002945.4 2776296 . N . . . . GT ./.
|
|
|
2673 NC_002945.4 2776297 . N . . . . GT ./.
|
|
|
2674 NC_002945.4 2776298 . N . . . . GT ./.
|
|
|
2675 NC_002945.4 2776299 . N . . . . GT ./.
|
|
|
2676 NC_002945.4 2776300 . N . . . . GT ./.
|
|
|
2677 NC_002945.4 2776301 . N . . . . GT ./.
|
|
|
2678 NC_002945.4 2776302 . N . . . . GT ./.
|
|
|
2679 NC_002945.4 2776303 . N . . . . GT ./.
|
|
|
2680 NC_002945.4 2776304 . N . . . . GT ./.
|
|
|
2681 NC_002945.4 2776305 . N . . . . GT ./.
|
|
|
2682 NC_002945.4 2776306 . N . . . . GT ./.
|
|
|
2683 NC_002945.4 2776307 . N . . . . GT ./.
|
|
|
2684 NC_002945.4 2776308 . N . . . . GT ./.
|
|
|
2685 NC_002945.4 2776309 . N . . . . GT ./.
|
|
|
2686 NC_002945.4 2776310 . N . . . . GT ./.
|
|
|
2687 NC_002945.4 2776311 . N . . . . GT ./.
|
|
|
2688 NC_002945.4 2776312 . N . . . . GT ./.
|
|
|
2689 NC_002945.4 2776313 . N . . . . GT ./.
|
|
|
2690 NC_002945.4 2776314 . N . . . . GT ./.
|
|
|
2691 NC_002945.4 2776315 . N . . . . GT ./.
|
|
|
2692 NC_002945.4 2776316 . N . . . . GT ./.
|
|
|
2693 NC_002945.4 2776317 . N . . . . GT ./.
|
|
|
2694 NC_002945.4 2776856 . N . . . . GT ./.
|
|
|
2695 NC_002945.4 2776857 . N . . . . GT ./.
|
|
|
2696 NC_002945.4 2776858 . N . . . . GT ./.
|
|
|
2697 NC_002945.4 2776859 . N . . . . GT ./.
|
|
|
2698 NC_002945.4 2776860 . N . . . . GT ./.
|
|
|
2699 NC_002945.4 2776861 . N . . . . GT ./.
|
|
|
2700 NC_002945.4 2776862 . N . . . . GT ./.
|
|
|
2701 NC_002945.4 2776863 . N . . . . GT ./.
|
|
|
2702 NC_002945.4 2776864 . N . . . . GT ./.
|
|
|
2703 NC_002945.4 2776865 . N . . . . GT ./.
|
|
|
2704 NC_002945.4 2776866 . N . . . . GT ./.
|
|
|
2705 NC_002945.4 2776867 . N . . . . GT ./.
|
|
|
2706 NC_002945.4 2776868 . N . . . . GT ./.
|
|
|
2707 NC_002945.4 2776869 . N . . . . GT ./.
|
|
|
2708 NC_002945.4 2776870 . N . . . . GT ./.
|
|
|
2709 NC_002945.4 2776871 . N . . . . GT ./.
|
|
|
2710 NC_002945.4 2776872 . N . . . . GT ./.
|
|
|
2711 NC_002945.4 2776873 . N . . . . GT ./.
|
|
|
2712 NC_002945.4 2776874 . N . . . . GT ./.
|
|
|
2713 NC_002945.4 2776875 . N . . . . GT ./.
|
|
|
2714 NC_002945.4 2776876 . N . . . . GT ./.
|
|
|
2715 NC_002945.4 2776877 . N . . . . GT ./.
|
|
|
2716 NC_002945.4 2776878 . N . . . . GT ./.
|
|
|
2717 NC_002945.4 2776879 . N . . . . GT ./.
|
|
|
2718 NC_002945.4 2776880 . N . . . . GT ./.
|
|
|
2719 NC_002945.4 2776881 . N . . . . GT ./.
|
|
|
2720 NC_002945.4 2776882 . N . . . . GT ./.
|
|
|
2721 NC_002945.4 2776883 . N . . . . GT ./.
|
|
|
2722 NC_002945.4 2776884 . N . . . . GT ./.
|
|
|
2723 NC_002945.4 2776885 . N . . . . GT ./.
|
|
|
2724 NC_002945.4 2776886 . N . . . . GT ./.
|
|
|
2725 NC_002945.4 2776887 . N . . . . GT ./.
|
|
|
2726 NC_002945.4 2776888 . N . . . . GT ./.
|
|
|
2727 NC_002945.4 2776889 . N . . . . GT ./.
|
|
|
2728 NC_002945.4 2776890 . N . . . . GT ./.
|
|
|
2729 NC_002945.4 2776891 . N . . . . GT ./.
|
|
|
2730 NC_002945.4 2776892 . N . . . . GT ./.
|
|
|
2731 NC_002945.4 2776893 . N . . . . GT ./.
|
|
|
2732 NC_002945.4 2776894 . N . . . . GT ./.
|
|
|
2733 NC_002945.4 2776895 . N . . . . GT ./.
|
|
|
2734 NC_002945.4 2776896 . N . . . . GT ./.
|
|
|
2735 NC_002945.4 2776897 . N . . . . GT ./.
|
|
|
2736 NC_002945.4 2776898 . N . . . . GT ./.
|
|
|
2737 NC_002945.4 2776899 . N . . . . GT ./.
|
|
|
2738 NC_002945.4 2776900 . N . . . . GT ./.
|
|
|
2739 NC_002945.4 2776901 . N . . . . GT ./.
|
|
|
2740 NC_002945.4 2776902 . N . . . . GT ./.
|
|
|
2741 NC_002945.4 2776903 . N . . . . GT ./.
|
|
|
2742 NC_002945.4 2776904 . N . . . . GT ./.
|
|
|
2743 NC_002945.4 2776905 . N . . . . GT ./.
|
|
|
2744 NC_002945.4 2776906 . N . . . . GT ./.
|
|
|
2745 NC_002945.4 2776907 . N . . . . GT ./.
|
|
|
2746 NC_002945.4 2776908 . N . . . . GT ./.
|
|
|
2747 NC_002945.4 2776909 . N . . . . GT ./.
|
|
|
2748 NC_002945.4 2776910 . N . . . . GT ./.
|
|
|
2749 NC_002945.4 2776911 . N . . . . GT ./.
|
|
|
2750 NC_002945.4 2776912 . N . . . . GT ./.
|
|
|
2751 NC_002945.4 2776913 . N . . . . GT ./.
|
|
|
2752 NC_002945.4 2776914 . N . . . . GT ./.
|
|
|
2753 NC_002945.4 2776915 . N . . . . GT ./.
|
|
|
2754 NC_002945.4 2776916 . N . . . . GT ./.
|
|
|
2755 NC_002945.4 2776917 . N . . . . GT ./.
|
|
|
2756 NC_002945.4 2776918 . N . . . . GT ./.
|
|
|
2757 NC_002945.4 2776919 . N . . . . GT ./.
|
|
|
2758 NC_002945.4 2776920 . N . . . . GT ./.
|
|
|
2759 NC_002945.4 2776921 . N . . . . GT ./.
|
|
|
2760 NC_002945.4 2776922 . N . . . . GT ./.
|
|
|
2761 NC_002945.4 2776923 . N . . . . GT ./.
|
|
|
2762 NC_002945.4 2776924 . N . . . . GT ./.
|
|
|
2763 NC_002945.4 2776925 . N . . . . GT ./.
|
|
|
2764 NC_002945.4 2806603 . T C 9831.77 . AC=2;AF=1.00;AN=2;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.82;SOR=1.150 GT:AD:DP:GQ:PL 1/1:0,319:319:99:9860,950,0
|
|
|
2765 NC_002945.4 2819831 . A G 6023.77 . AC=2;AF=1.00;AN=2;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.05;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,194:194:99:6052,579,0
|
|
|
2766 NC_002945.4 2823105 . G C 9167.77 . AC=2;AF=1.00;AN=2;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.17;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,285:285:99:9196,854,0
|
|
|
2767 NC_002945.4 2838052 . T C 11087.77 . AC=2;AF=1.00;AN=2;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.99;QD=30.80;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,360:360:99:11116,1074,0
|
|
|
2768 NC_002945.4 2852055 . N . . . . GT ./.
|
|
|
2769 NC_002945.4 2852056 . N . . . . GT ./.
|
|
|
2770 NC_002945.4 2852057 . N . . . . GT ./.
|
|
|
2771 NC_002945.4 2852058 . N . . . . GT ./.
|
|
|
2772 NC_002945.4 2852059 . N . . . . GT ./.
|
|
|
2773 NC_002945.4 2852060 . N . . . . GT ./.
|
|
|
2774 NC_002945.4 2852061 . N . . . . GT ./.
|
|
|
2775 NC_002945.4 2852062 . N . . . . GT ./.
|
|
|
2776 NC_002945.4 2852063 . N . . . . GT ./.
|
|
|
2777 NC_002945.4 2852064 . N . . . . GT ./.
|
|
|
2778 NC_002945.4 2852065 . N . . . . GT ./.
|
|
|
2779 NC_002945.4 2852066 . N . . . . GT ./.
|
|
|
2780 NC_002945.4 2852067 . N . . . . GT ./.
|
|
|
2781 NC_002945.4 2852068 . N . . . . GT ./.
|
|
|
2782 NC_002945.4 2852069 . N . . . . GT ./.
|
|
|
2783 NC_002945.4 2852070 . N . . . . GT ./.
|
|
|
2784 NC_002945.4 2852071 . N . . . . GT ./.
|
|
|
2785 NC_002945.4 2852072 . N . . . . GT ./.
|
|
|
2786 NC_002945.4 2852073 . N . . . . GT ./.
|
|
|
2787 NC_002945.4 2852074 . N . . . . GT ./.
|
|
|
2788 NC_002945.4 2852075 . N . . . . GT ./.
|
|
|
2789 NC_002945.4 2852076 . N . . . . GT ./.
|
|
|
2790 NC_002945.4 2852077 . N . . . . GT ./.
|
|
|
2791 NC_002945.4 2852078 . N . . . . GT ./.
|
|
|
2792 NC_002945.4 2852079 . N . . . . GT ./.
|
|
|
2793 NC_002945.4 2852080 . N . . . . GT ./.
|
|
|
2794 NC_002945.4 2852081 . N . . . . GT ./.
|
|
|
2795 NC_002945.4 2852082 . N . . . . GT ./.
|
|
|
2796 NC_002945.4 2852083 . N . . . . GT ./.
|
|
|
2797 NC_002945.4 2852084 . N . . . . GT ./.
|
|
|
2798 NC_002945.4 2852085 . N . . . . GT ./.
|
|
|
2799 NC_002945.4 2852086 . N . . . . GT ./.
|
|
|
2800 NC_002945.4 2852087 . N . . . . GT ./.
|
|
|
2801 NC_002945.4 2852088 . N . . . . GT ./.
|
|
|
2802 NC_002945.4 2852089 . N . . . . GT ./.
|
|
|
2803 NC_002945.4 2852090 . N . . . . GT ./.
|
|
|
2804 NC_002945.4 2852091 . N . . . . GT ./.
|
|
|
2805 NC_002945.4 2852092 . N . . . . GT ./.
|
|
|
2806 NC_002945.4 2852093 . N . . . . GT ./.
|
|
|
2807 NC_002945.4 2852094 . N . . . . GT ./.
|
|
|
2808 NC_002945.4 2852095 . N . . . . GT ./.
|
|
|
2809 NC_002945.4 2852096 . N . . . . GT ./.
|
|
|
2810 NC_002945.4 2852097 . N . . . . GT ./.
|
|
|
2811 NC_002945.4 2852098 . N . . . . GT ./.
|
|
|
2812 NC_002945.4 2852099 . N . . . . GT ./.
|
|
|
2813 NC_002945.4 2852100 . N . . . . GT ./.
|
|
|
2814 NC_002945.4 2852101 . N . . . . GT ./.
|
|
|
2815 NC_002945.4 2852102 . N . . . . GT ./.
|
|
|
2816 NC_002945.4 2870624 . T C 7988.77 . AC=2;AF=1.00;AN=2;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.33;SOR=1.004 GT:AD:DP:GQ:PL 1/1:0,255:255:99:8017,762,0
|
|
|
2817 NC_002945.4 2886118 . C T 8430.77 . AC=2;AF=1.00;AN=2;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.85;SOR=0.932 GT:AD:DP:GQ:PL 1/1:0,314:314:99:8459,931,0
|
|
|
2818 NC_002945.4 2911106 . C T 5772.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.834;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=3.644;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.01;ReadPosRankSum=-0.406;SOR=0.697 GT:AD:DP:GQ:PL 1/1:1,198:199:99:5801,576,0
|
|
|
2819 NC_002945.4 2924775 . A G 10513.77 . AC=2;AF=1.00;AN=2;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.95;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,351:351:99:10542,1050,0
|
|
|
2820 NC_002945.4 2932324 . G A 345.77 . AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.58;SOR=4.804 GT:AD:DP:GQ:PL 1/1:0,10:10:30:374,30,0
|
|
|
2821 NC_002945.4 2933389 . N . . . . GT ./.
|
|
|
2822 NC_002945.4 2933390 . N . . . . GT ./.
|
|
|
2823 NC_002945.4 2933391 . N . . . . GT ./.
|
|
|
2824 NC_002945.4 2933392 . N . . . . GT ./.
|
|
|
2825 NC_002945.4 2933393 . N . . . . GT ./.
|
|
|
2826 NC_002945.4 2933394 . N . . . . GT ./.
|
|
|
2827 NC_002945.4 2933597 . N . . . . GT ./.
|
|
|
2828 NC_002945.4 2933598 . N . . . . GT ./.
|
|
|
2829 NC_002945.4 2933599 . N . . . . GT ./.
|
|
|
2830 NC_002945.4 2933600 . N . . . . GT ./.
|
|
|
2831 NC_002945.4 2933601 . N . . . . GT ./.
|
|
|
2832 NC_002945.4 2933602 . N . . . . GT ./.
|
|
|
2833 NC_002945.4 2933603 . N . . . . GT ./.
|
|
|
2834 NC_002945.4 2933604 . N . . . . GT ./.
|
|
|
2835 NC_002945.4 2933605 . N . . . . GT ./.
|
|
|
2836 NC_002945.4 2933606 . N . . . . GT ./.
|
|
|
2837 NC_002945.4 2933607 . N . . . . GT ./.
|
|
|
2838 NC_002945.4 2933608 . N . . . . GT ./.
|
|
|
2839 NC_002945.4 2933609 . N . . . . GT ./.
|
|
|
2840 NC_002945.4 2933610 . N . . . . GT ./.
|
|
|
2841 NC_002945.4 2933611 . N . . . . GT ./.
|
|
|
2842 NC_002945.4 2933612 . N . . . . GT ./.
|
|
|
2843 NC_002945.4 2933613 . N . . . . GT ./.
|
|
|
2844 NC_002945.4 2933614 . N . . . . GT ./.
|
|
|
2845 NC_002945.4 2933615 . N . . . . GT ./.
|
|
|
2846 NC_002945.4 2933616 . N . . . . GT ./.
|
|
|
2847 NC_002945.4 2933617 . N . . . . GT ./.
|
|
|
2848 NC_002945.4 2933618 . N . . . . GT ./.
|
|
|
2849 NC_002945.4 2933619 . N . . . . GT ./.
|
|
|
2850 NC_002945.4 2933620 . N . . . . GT ./.
|
|
|
2851 NC_002945.4 2933621 . N . . . . GT ./.
|
|
|
2852 NC_002945.4 2933622 . N . . . . GT ./.
|
|
|
2853 NC_002945.4 2933623 . N . . . . GT ./.
|
|
|
2854 NC_002945.4 2933624 . N . . . . GT ./.
|
|
|
2855 NC_002945.4 2933625 . N . . . . GT ./.
|
|
|
2856 NC_002945.4 2933626 . N . . . . GT ./.
|
|
|
2857 NC_002945.4 2933627 . N . . . . GT ./.
|
|
|
2858 NC_002945.4 2933628 . N . . . . GT ./.
|
|
|
2859 NC_002945.4 2933629 . N . . . . GT ./.
|
|
|
2860 NC_002945.4 2933630 . N . . . . GT ./.
|
|
|
2861 NC_002945.4 2933631 . N . . . . GT ./.
|
|
|
2862 NC_002945.4 2933632 . N . . . . GT ./.
|
|
|
2863 NC_002945.4 2933633 . N . . . . GT ./.
|
|
|
2864 NC_002945.4 2933634 . N . . . . GT ./.
|
|
|
2865 NC_002945.4 2933635 . N . . . . GT ./.
|
|
|
2866 NC_002945.4 2933636 . N . . . . GT ./.
|
|
|
2867 NC_002945.4 2933637 . N . . . . GT ./.
|
|
|
2868 NC_002945.4 2933638 . N . . . . GT ./.
|
|
|
2869 NC_002945.4 2933639 . N . . . . GT ./.
|
|
|
2870 NC_002945.4 2933640 . N . . . . GT ./.
|
|
|
2871 NC_002945.4 2933641 . N . . . . GT ./.
|
|
|
2872 NC_002945.4 2933642 . N . . . . GT ./.
|
|
|
2873 NC_002945.4 2933643 . N . . . . GT ./.
|
|
|
2874 NC_002945.4 2933644 . N . . . . GT ./.
|
|
|
2875 NC_002945.4 2933645 . N . . . . GT ./.
|
|
|
2876 NC_002945.4 2942926 . A G 11364.77 . AC=2;AF=1.00;AN=2;DP=378;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.07;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,378:378:99:11393,1127,0
|
|
|
2877 NC_002945.4 2947196 . G A 7575.77 . AC=2;AF=1.00;AN=2;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.59;SOR=1.054 GT:AD:DP:GQ:PL 1/1:0,256:256:99:7604,764,0
|
|
|
2878 NC_002945.4 2949531 . G A 6339.77 . AC=2;AF=1.00;AN=2;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.86;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,236:236:99:6368,694,0
|
|
|
2879 NC_002945.4 2964207 . T G 8938.77 . AC=2;AF=1.00;AN=2;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.21;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,306:306:99:8967,912,0
|
|
|
2880 NC_002945.4 2984156 . T G 10381.77 . AC=2;AF=1.00;AN=2;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.01;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,346:346:99:10410,1030,0
|
|
|
2881 NC_002945.4 2992612 . T C 7917.77 . AC=2;AF=1.00;AN=2;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.05;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,255:255:99:7946,763,0
|
|
|
2882 NC_002945.4 2997998 . C T 9590.77 . AC=2;AF=1.00;AN=2;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.16;SOR=1.161 GT:AD:DP:GQ:PL 1/1:0,318:318:99:9619,950,0
|
|
|
2883 NC_002945.4 2998136 . A C 70.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-5.020;ClippingRankSum=0.000;DP=259;ExcessHet=3.0103;FS=444.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.29;ReadPosRankSum=-11.131;SOR=8.553 GT:AD:DP:GQ:PL 0/1:175,71:246:99:99,0,3117
|
|
|
2884 NC_002945.4 3018593 . G T 7893.77 . AC=2;AF=1.00;AN=2;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.01;SOR=0.780 GT:AD:DP:GQ:PL 1/1:0,263:263:99:7922,787,0
|
|
|
2885 NC_002945.4 3036490 . C G 5254.77 . AC=2;AF=1.00;AN=2;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.85;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5283,495,0
|
|
|
2886 NC_002945.4 3037620 . C G 7175.77 . AC=2;AF=1.00;AN=2;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.77;SOR=1.063 GT:AD:DP:GQ:PL 1/1:0,219:219:99:7204,655,0
|
|
|
2887 NC_002945.4 3040820 . A G 6881.77 . AC=2;AF=1.00;AN=2;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.73;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6910,612,0
|
|
|
2888 NC_002945.4 3042914 . T A 8876.77 . AC=2;AF=1.00;AN=2;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.01;SOR=1.005 GT:AD:DP:GQ:PL 1/1:0,306:306:99:8905,910,0
|
|
|
2889 NC_002945.4 3047601 . A C 10229.77 . AC=2;AF=1.00;AN=2;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.91;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,331:331:99:10258,991,0
|
|
|
2890 NC_002945.4 3053649 . G A 7805.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=3.166;ClippingRankSum=0.000;DP=280;ExcessHet=3.0103;FS=10.058;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.08;ReadPosRankSum=1.447;SOR=0.377 GT:AD:DP:GQ:PL 1/1:3,275:278:99:7834,791,0
|
|
|
2891 NC_002945.4 3063074 . A G 9607.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0.000;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.20;ReadPosRankSum=-0.757;SOR=0.420 GT:AD:DP:GQ:PL 1/1:1,328:329:99:9636,938,0
|
|
|
2892 NC_002945.4 3065929 . A C 5091.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.31;ReadPosRankSum=-0.668;SOR=0.331 GT:AD:DP:GQ:PL 1/1:1,167:168:99:5120,490,0
|
|
|
2893 NC_002945.4 3068041 . A G 5080.77 . AC=2;AF=1.00;AN=2;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.71;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5109,509,0
|
|
|
2894 NC_002945.4 3070642 . C T 3071.77 . AC=2;AF=1.00;AN=2;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.79;SOR=4.332 GT:AD:DP:GQ:PL 1/1:0,85:85:99:3100,254,0
|
|
|
2895 NC_002945.4 3080843 . T C 6017.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0.000;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQRankSum=2.869;QD=26.28;ReadPosRankSum=2.094;SOR=0.739 GT:AD:DP:GQ:PL 1/1:8,221:229:99:6046,424,0
|
|
|
2896 NC_002945.4 3092170 . G A 9169.77 . AC=2;AF=1.00;AN=2;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.21;SOR=0.931 GT:AD:DP:GQ:PL 1/1:0,325:325:99:9198,966,0
|
|
|
2897 NC_002945.4 3098932 . T C 5776.77 . AC=2;AF=1.00;AN=2;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.45;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5805,532,0
|
|
|
2898 NC_002945.4 3100639 . G C 4674.77 . AC=2;AF=1.00;AN=2;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.97;SOR=2.098 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4703,459,0
|
|
|
2899 NC_002945.4 3103354 . T C 6427.77 . AC=2;AF=1.00;AN=2;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.46;SOR=1.746 GT:AD:DP:GQ:PL 1/1:0,198:198:99:6456,591,0
|
|
|
2900 NC_002945.4 3137471 . A G 7675.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.956;ClippingRankSum=0.000;DP=246;ExcessHet=3.0103;FS=3.136;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=31.33;ReadPosRankSum=-0.498;SOR=0.329 GT:AD:DP:GQ:PL 1/1:1,244:245:99:7704,723,0
|
|
|
2901 NC_002945.4 3140342 . G T 8580.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.979;ClippingRankSum=0.000;DP=307;ExcessHet=3.0103;FS=3.067;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.04;ReadPosRankSum=2.826;SOR=0.276 GT:AD:DP:GQ:PL 1/1:1,305:306:99:8609,898,0
|
|
|
2902 NC_002945.4 3147547 . G A 6453.77 . AC=2;AF=1.00;AN=2;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.12;SOR=0.817 GT:AD:DP:GQ:PL 1/1:0,238:238:99:6482,705,0
|
|
|
2903 NC_002945.4 3154140 . T C 10114.77 . AC=2;AF=1.00;AN=2;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.47;SOR=0.847 GT:AD:DP:GQ:PL 1/1:0,332:332:99:10143,990,0
|
|
|
2904 NC_002945.4 3159182 . G A 7811.77 . AC=2;AF=1.00;AN=2;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.04;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,269:269:99:7840,802,0
|
|
|
2905 NC_002945.4 3173568 . T C 6936.77 . AC=2;AF=1.00;AN=2;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.86;SOR=1.052 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6965,597,0
|
|
|
2906 NC_002945.4 3203316 . T C 10420.77 . AC=2;AF=1.00;AN=2;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.27;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,356:356:99:10449,1060,0
|
|
|
2907 NC_002945.4 3209298 . N . . . . GT ./.
|
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|
2908 NC_002945.4 3209299 . N . . . . GT ./.
|
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|
2909 NC_002945.4 3209300 . N . . . . GT ./.
|
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|
2910 NC_002945.4 3209301 . N . . . . GT ./.
|
|
|
2911 NC_002945.4 3211854 . T C 6907.77 . AC=2;AF=1.00;AN=2;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.27;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,236:236:99:6936,702,0
|
|
|
2912 NC_002945.4 3219356 . N . . . . GT ./.
|
|
|
2913 NC_002945.4 3219357 . N . . . . GT ./.
|
|
|
2914 NC_002945.4 3225166 . T G 94.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-5.377;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=228.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=3.077;SOR=7.903 GT:AD:DP:GQ:PL 0/1:129,51:180:99:123,0,2817
|
|
|
2915 NC_002945.4 3230333 . G A 5302.77 . AC=2;AF=1.00;AN=2;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.76;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5331,567,0
|
|
|
2916 NC_002945.4 3247623 . C T 6755.77 . AC=2;AF=1.00;AN=2;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.25;SOR=1.234 GT:AD:DP:GQ:PL 1/1:0,231:231:99:6784,687,0
|
|
|
2917 NC_002945.4 3261792 . A G 12178.77 . AC=2;AF=1.00;AN=2;DP=434;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.13;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,433:433:99:12207,1290,0
|
|
|
2918 NC_002945.4 3267690 . A G 8125.77 . AC=2;AF=1.00;AN=2;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.12;SOR=0.750 GT:AD:DP:GQ:PL 1/1:0,253:253:99:8154,753,0
|
|
|
2919 NC_002945.4 3270181 . A G 9105.77 . AC=2;AF=1.00;AN=2;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.56;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,308:308:99:9134,919,0
|
|
|
2920 NC_002945.4 3282696 . G A 9245.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DP=339;ExcessHet=3.0103;FS=3.103;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.77;ReadPosRankSum=-0.405;SOR=0.301 GT:AD:DP:GQ:PL 1/1:1,332:333:99:9274,974,0
|
|
|
2921 NC_002945.4 3297745 . A T 938.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=4.263;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=22.822;MLEAC=1;MLEAF=0.500;MQ=56.99;MQRankSum=-3.428;QD=8.23;ReadPosRankSum=-4.337;SOR=0.047 GT:AD:DP:GQ:PL 0/1:71,43:114:99:967,0,2866
|
|
|
2922 NC_002945.4 3329772 . C G 7731.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.925;ClippingRankSum=0.000;DP=257;ExcessHet=3.0103;FS=3.096;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.32;ReadPosRankSum=-0.608;SOR=0.299 GT:AD:DP:GQ:PL 1/1:1,254:255:99:7760,750,0
|
|
|
2923 NC_002945.4 3338298 . C G 3356.77 . AC=2;AF=1.00;AN=2;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.78;QD=27.07;SOR=1.197 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3385,368,0
|
|
|
2924 NC_002945.4 3371156 . A G 9051.77 . AC=2;AF=1.00;AN=2;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.11;SOR=0.847 GT:AD:DP:GQ:PL 1/1:0,291:291:99:9080,866,0
|
|
|
2925 NC_002945.4 3394764 . A G 9595.77 . AC=2;AF=1.00;AN=2;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.26;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,328:328:99:9624,976,0
|
|
|
2926 NC_002945.4 3396621 . G C 8668.77 . AC=2;AF=1.00;AN=2;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.31;SOR=0.907 GT:AD:DP:GQ:PL 1/1:0,286:286:99:8697,854,0
|
|
|
2927 NC_002945.4 3399294 . G T 8108.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.840;ClippingRankSum=0.000;DP=272;ExcessHet=3.0103;FS=3.059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.92;ReadPosRankSum=2.415;SOR=0.270 GT:AD:DP:GQ:PL 1/1:1,270:271:99:8137,795,0
|
|
|
2928 NC_002945.4 3421983 . C T 5464.77 . AC=2;AF=1.00;AN=2;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.12;SOR=2.069 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5493,493,0
|
|
|
2929 NC_002945.4 3428078 . C T 5462.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=4.079;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=26.289;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.41;ReadPosRankSum=3.211;SOR=1.197 GT:AD:DP:GQ:PL 1/1:6,209:215:99:5491,562,0
|
|
|
2930 NC_002945.4 3429376 . A C 5595.77 . AC=2;AF=1.00;AN=2;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.33;SOR=1.698 GT:AD:DP:GQ:PL 1/1:0,163:163:99:5624,488,0
|
|
|
2931 NC_002945.4 3439578 . G A 10250.77 . AC=2;AF=1.00;AN=2;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.88;SOR=0.909 GT:AD:DP:GQ:PL 1/1:0,355:355:99:10279,1056,0
|
|
|
2932 NC_002945.4 3450988 . C T 9125.77 . AC=2;AF=1.00;AN=2;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.92;SOR=1.156 GT:AD:DP:GQ:PL 1/1:0,305:305:99:9154,907,0
|
|
|
2933 NC_002945.4 3451869 . C A 8997.77 . AC=2;AF=1.00;AN=2;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.66;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,314:314:99:9026,929,0
|
|
|
2934 NC_002945.4 3464524 . T C 5370.77 . AC=2;AF=1.00;AN=2;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.51;SOR=5.361 GT:AD:DP:GQ:PL 1/1:0,138:138:99:5399,414,0
|
|
|
2935 NC_002945.4 3471404 . A G 11021.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=2.621;ClippingRankSum=0.000;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=31.13;ReadPosRankSum=-0.717;SOR=1.272 GT:AD:DP:GQ:PL 1/1:2,352:354:99:11050,1033,0
|
|
|
2936 NC_002945.4 3482644 . A T 6350.77 . AC=2;AF=1.00;AN=2;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.27;SOR=0.861 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6379,644,0
|
|
|
2937 NC_002945.4 3484836 . A G 9592.77 . AC=2;AF=1.00;AN=2;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.94;QD=29.43;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,326:326:99:9621,971,0
|
|
|
2938 NC_002945.4 3495510 . C T 7253.77 . AC=2;AF=1.00;AN=2;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.13;SOR=1.055 GT:AD:DP:GQ:PL 1/1:0,249:249:99:7282,738,0
|
|
|
2939 NC_002945.4 3521264 . C T 8800.77 . AC=2;AF=1.00;AN=2;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.57;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,308:308:99:8829,919,0
|
|
|
2940 NC_002945.4 3558883 . G C 7931.77 . AC=2;AF=1.00;AN=2;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.61;SOR=2.282 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7960,702,0
|
|
|
2941 NC_002945.4 3574014 . T C 9000.77 . AC=2;AF=1.00;AN=2;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.14;SOR=1.227 GT:AD:DP:GQ:PL 1/1:0,289:289:99:9029,862,0
|
|
|
2942 NC_002945.4 3577163 . G T 9642.77 . AC=2;AF=1.00;AN=2;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.25;SOR=1.130 GT:AD:DP:GQ:PL 1/1:0,299:299:99:9671,893,0
|
|
|
2943 NC_002945.4 3626128 . T C 7529.77 . AC=2;AF=1.00;AN=2;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.51;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,239:239:99:7558,715,0
|
|
|
2944 NC_002945.4 3629370 . G A 8131.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.877;ClippingRankSum=0.000;DP=278;ExcessHet=3.0103;FS=3.268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.25;ReadPosRankSum=2.075;SOR=0.423 GT:AD:DP:GQ:PL 1/1:1,277:278:99:8160,818,0
|
|
|
2945 NC_002945.4 3667823 . A G 10431.77 . AC=2;AF=1.00;AN=2;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.03;QD=31.05;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,336:336:99:10460,1004,0
|
|
|
2946 NC_002945.4 3695728 . N . . . . GT ./.
|
|
|
2947 NC_002945.4 3695729 . N . . . . GT ./.
|
|
|
2948 NC_002945.4 3695730 . N . . . . GT ./.
|
|
|
2949 NC_002945.4 3695731 . N . . . . GT ./.
|
|
|
2950 NC_002945.4 3695732 . N . . . . GT ./.
|
|
|
2951 NC_002945.4 3695733 . N . . . . GT ./.
|
|
|
2952 NC_002945.4 3695734 . N . . . . GT ./.
|
|
|
2953 NC_002945.4 3695735 . N . . . . GT ./.
|
|
|
2954 NC_002945.4 3695736 . N . . . . GT ./.
|
|
|
2955 NC_002945.4 3695737 . N . . . . GT ./.
|
|
|
2956 NC_002945.4 3695738 . N . . . . GT ./.
|
|
|
2957 NC_002945.4 3695739 . N . . . . GT ./.
|
|
|
2958 NC_002945.4 3695740 . N . . . . GT ./.
|
|
|
2959 NC_002945.4 3695741 . N . . . . GT ./.
|
|
|
2960 NC_002945.4 3695742 . N . . . . GT ./.
|
|
|
2961 NC_002945.4 3695743 . N . . . . GT ./.
|
|
|
2962 NC_002945.4 3695744 . N . . . . GT ./.
|
|
|
2963 NC_002945.4 3695745 . N . . . . GT ./.
|
|
|
2964 NC_002945.4 3695746 . N . . . . GT ./.
|
|
|
2965 NC_002945.4 3695747 . N . . . . GT ./.
|
|
|
2966 NC_002945.4 3695748 . N . . . . GT ./.
|
|
|
2967 NC_002945.4 3695749 . N . . . . GT ./.
|
|
|
2968 NC_002945.4 3695750 . N . . . . GT ./.
|
|
|
2969 NC_002945.4 3695751 . N . . . . GT ./.
|
|
|
2970 NC_002945.4 3695752 . N . . . . GT ./.
|
|
|
2971 NC_002945.4 3695753 . N . . . . GT ./.
|
|
|
2972 NC_002945.4 3695754 . N . . . . GT ./.
|
|
|
2973 NC_002945.4 3695755 . N . . . . GT ./.
|
|
|
2974 NC_002945.4 3695756 . N . . . . GT ./.
|
|
|
2975 NC_002945.4 3695757 . N . . . . GT ./.
|
|
|
2976 NC_002945.4 3695758 . N . . . . GT ./.
|
|
|
2977 NC_002945.4 3695759 . N . . . . GT ./.
|
|
|
2978 NC_002945.4 3695760 . N . . . . GT ./.
|
|
|
2979 NC_002945.4 3695761 . N . . . . GT ./.
|
|
|
2980 NC_002945.4 3695762 . N . . . . GT ./.
|
|
|
2981 NC_002945.4 3695763 . N . . . . GT ./.
|
|
|
2982 NC_002945.4 3695764 . N . . . . GT ./.
|
|
|
2983 NC_002945.4 3695765 . N . . . . GT ./.
|
|
|
2984 NC_002945.4 3695766 . N . . . . GT ./.
|
|
|
2985 NC_002945.4 3695767 . N . . . . GT ./.
|
|
|
2986 NC_002945.4 3695768 . N . . . . GT ./.
|
|
|
2987 NC_002945.4 3695769 . N . . . . GT ./.
|
|
|
2988 NC_002945.4 3695770 . N . . . . GT ./.
|
|
|
2989 NC_002945.4 3695771 . N . . . . GT ./.
|
|
|
2990 NC_002945.4 3695772 . N . . . . GT ./.
|
|
|
2991 NC_002945.4 3695773 . N . . . . GT ./.
|
|
|
2992 NC_002945.4 3695774 . N . . . . GT ./.
|
|
|
2993 NC_002945.4 3695775 . N . . . . GT ./.
|
|
|
2994 NC_002945.4 3695776 . N . . . . GT ./.
|
|
|
2995 NC_002945.4 3695777 . N . . . . GT ./.
|
|
|
2996 NC_002945.4 3695778 . N . . . . GT ./.
|
|
|
2997 NC_002945.4 3695779 . N . . . . GT ./.
|
|
|
2998 NC_002945.4 3695780 . N . . . . GT ./.
|
|
|
2999 NC_002945.4 3695781 . N . . . . GT ./.
|
|
|
3000 NC_002945.4 3695782 . N . . . . GT ./.
|
|
|
3001 NC_002945.4 3695783 . N . . . . GT ./.
|
|
|
3002 NC_002945.4 3695784 . N . . . . GT ./.
|
|
|
3003 NC_002945.4 3695785 . N . . . . GT ./.
|
|
|
3004 NC_002945.4 3695786 . N . . . . GT ./.
|
|
|
3005 NC_002945.4 3695787 . N . . . . GT ./.
|
|
|
3006 NC_002945.4 3695788 . N . . . . GT ./.
|
|
|
3007 NC_002945.4 3695789 . N . . . . GT ./.
|
|
|
3008 NC_002945.4 3695790 . N . . . . GT ./.
|
|
|
3009 NC_002945.4 3695791 . N . . . . GT ./.
|
|
|
3010 NC_002945.4 3695812 . N . . . . GT ./.
|
|
|
3011 NC_002945.4 3695813 . N . . . . GT ./.
|
|
|
3012 NC_002945.4 3695814 . N . . . . GT ./.
|
|
|
3013 NC_002945.4 3695815 . N . . . . GT ./.
|
|
|
3014 NC_002945.4 3695816 . N . . . . GT ./.
|
|
|
3015 NC_002945.4 3695817 . N . . . . GT ./.
|
|
|
3016 NC_002945.4 3695818 . N . . . . GT ./.
|
|
|
3017 NC_002945.4 3695819 . N . . . . GT ./.
|
|
|
3018 NC_002945.4 3695820 . N . . . . GT ./.
|
|
|
3019 NC_002945.4 3695821 . N . . . . GT ./.
|
|
|
3020 NC_002945.4 3695822 . N . . . . GT ./.
|
|
|
3021 NC_002945.4 3695823 . N . . . . GT ./.
|
|
|
3022 NC_002945.4 3695824 . N . . . . GT ./.
|
|
|
3023 NC_002945.4 3695825 . N . . . . GT ./.
|
|
|
3024 NC_002945.4 3695826 . N . . . . GT ./.
|
|
|
3025 NC_002945.4 3695827 . N . . . . GT ./.
|
|
|
3026 NC_002945.4 3695828 . N . . . . GT ./.
|
|
|
3027 NC_002945.4 3695829 . N . . . . GT ./.
|
|
|
3028 NC_002945.4 3695830 . N . . . . GT ./.
|
|
|
3029 NC_002945.4 3695831 . N . . . . GT ./.
|
|
|
3030 NC_002945.4 3695832 . N . . . . GT ./.
|
|
|
3031 NC_002945.4 3695833 . N . . . . GT ./.
|
|
|
3032 NC_002945.4 3695834 . N . . . . GT ./.
|
|
|
3033 NC_002945.4 3695835 . N . . . . GT ./.
|
|
|
3034 NC_002945.4 3695836 . N . . . . GT ./.
|
|
|
3035 NC_002945.4 3695837 . N . . . . GT ./.
|
|
|
3036 NC_002945.4 3695838 . N . . . . GT ./.
|
|
|
3037 NC_002945.4 3695839 . N . . . . GT ./.
|
|
|
3038 NC_002945.4 3695840 . N . . . . GT ./.
|
|
|
3039 NC_002945.4 3695841 . N . . . . GT ./.
|
|
|
3040 NC_002945.4 3695842 . N . . . . GT ./.
|
|
|
3041 NC_002945.4 3695843 . N . . . . GT ./.
|
|
|
3042 NC_002945.4 3695844 . N . . . . GT ./.
|
|
|
3043 NC_002945.4 3695845 . N . . . . GT ./.
|
|
|
3044 NC_002945.4 3695846 . N . . . . GT ./.
|
|
|
3045 NC_002945.4 3695847 . N . . . . GT ./.
|
|
|
3046 NC_002945.4 3695848 . N . . . . GT ./.
|
|
|
3047 NC_002945.4 3695849 . N . . . . GT ./.
|
|
|
3048 NC_002945.4 3695850 . N . . . . GT ./.
|
|
|
3049 NC_002945.4 3695851 . N . . . . GT ./.
|
|
|
3050 NC_002945.4 3695852 . N . . . . GT ./.
|
|
|
3051 NC_002945.4 3695853 . N . . . . GT ./.
|
|
|
3052 NC_002945.4 3695854 . N . . . . GT ./.
|
|
|
3053 NC_002945.4 3695855 . N . . . . GT ./.
|
|
|
3054 NC_002945.4 3695856 . N . . . . GT ./.
|
|
|
3055 NC_002945.4 3695857 . N . . . . GT ./.
|
|
|
3056 NC_002945.4 3695858 . N . . . . GT ./.
|
|
|
3057 NC_002945.4 3695859 . N . . . . GT ./.
|
|
|
3058 NC_002945.4 3695860 . N . . . . GT ./.
|
|
|
3059 NC_002945.4 3695861 . N . . . . GT ./.
|
|
|
3060 NC_002945.4 3695862 . N . . . . GT ./.
|
|
|
3061 NC_002945.4 3695863 . N . . . . GT ./.
|
|
|
3062 NC_002945.4 3695864 . N . . . . GT ./.
|
|
|
3063 NC_002945.4 3695865 . N . . . . GT ./.
|
|
|
3064 NC_002945.4 3695866 . N . . . . GT ./.
|
|
|
3065 NC_002945.4 3695867 . N . . . . GT ./.
|
|
|
3066 NC_002945.4 3695868 . N . . . . GT ./.
|
|
|
3067 NC_002945.4 3695869 . N . . . . GT ./.
|
|
|
3068 NC_002945.4 3695870 . N . . . . GT ./.
|
|
|
3069 NC_002945.4 3695871 . N . . . . GT ./.
|
|
|
3070 NC_002945.4 3695872 . N . . . . GT ./.
|
|
|
3071 NC_002945.4 3695873 . N . . . . GT ./.
|
|
|
3072 NC_002945.4 3695874 . N . . . . GT ./.
|
|
|
3073 NC_002945.4 3695875 . N . . . . GT ./.
|
|
|
3074 NC_002945.4 3695876 . N . . . . GT ./.
|
|
|
3075 NC_002945.4 3695877 . N . . . . GT ./.
|
|
|
3076 NC_002945.4 3695878 . N . . . . GT ./.
|
|
|
3077 NC_002945.4 3695879 . N . . . . GT ./.
|
|
|
3078 NC_002945.4 3695880 . N . . . . GT ./.
|
|
|
3079 NC_002945.4 3695881 . N . . . . GT ./.
|
|
|
3080 NC_002945.4 3695882 . N . . . . GT ./.
|
|
|
3081 NC_002945.4 3695883 . N . . . . GT ./.
|
|
|
3082 NC_002945.4 3695884 . N . . . . GT ./.
|
|
|
3083 NC_002945.4 3695885 . N . . . . GT ./.
|
|
|
3084 NC_002945.4 3695886 . N . . . . GT ./.
|
|
|
3085 NC_002945.4 3695887 . N . . . . GT ./.
|
|
|
3086 NC_002945.4 3695888 . N . . . . GT ./.
|
|
|
3087 NC_002945.4 3695889 . N . . . . GT ./.
|
|
|
3088 NC_002945.4 3695890 . N . . . . GT ./.
|
|
|
3089 NC_002945.4 3695891 . N . . . . GT ./.
|
|
|
3090 NC_002945.4 3695892 . N . . . . GT ./.
|
|
|
3091 NC_002945.4 3695893 . N . . . . GT ./.
|
|
|
3092 NC_002945.4 3695894 . N . . . . GT ./.
|
|
|
3093 NC_002945.4 3695895 . N . . . . GT ./.
|
|
|
3094 NC_002945.4 3695896 . N . . . . GT ./.
|
|
|
3095 NC_002945.4 3695897 . N . . . . GT ./.
|
|
|
3096 NC_002945.4 3695898 . N . . . . GT ./.
|
|
|
3097 NC_002945.4 3695899 . N . . . . GT ./.
|
|
|
3098 NC_002945.4 3695900 . N . . . . GT ./.
|
|
|
3099 NC_002945.4 3695901 . N . . . . GT ./.
|
|
|
3100 NC_002945.4 3695902 . N . . . . GT ./.
|
|
|
3101 NC_002945.4 3695903 . N . . . . GT ./.
|
|
|
3102 NC_002945.4 3695904 . N . . . . GT ./.
|
|
|
3103 NC_002945.4 3695905 . N . . . . GT ./.
|
|
|
3104 NC_002945.4 3695906 . N . . . . GT ./.
|
|
|
3105 NC_002945.4 3695907 . N . . . . GT ./.
|
|
|
3106 NC_002945.4 3695908 . N . . . . GT ./.
|
|
|
3107 NC_002945.4 3695909 . N . . . . GT ./.
|
|
|
3108 NC_002945.4 3695910 . N . . . . GT ./.
|
|
|
3109 NC_002945.4 3695911 . N . . . . GT ./.
|
|
|
3110 NC_002945.4 3695912 . N . . . . GT ./.
|
|
|
3111 NC_002945.4 3695913 . N . . . . GT ./.
|
|
|
3112 NC_002945.4 3695914 . N . . . . GT ./.
|
|
|
3113 NC_002945.4 3695915 . N . . . . GT ./.
|
|
|
3114 NC_002945.4 3695916 . N . . . . GT ./.
|
|
|
3115 NC_002945.4 3695917 . N . . . . GT ./.
|
|
|
3116 NC_002945.4 3695918 . N . . . . GT ./.
|
|
|
3117 NC_002945.4 3695919 . N . . . . GT ./.
|
|
|
3118 NC_002945.4 3695920 . N . . . . GT ./.
|
|
|
3119 NC_002945.4 3695921 . N . . . . GT ./.
|
|
|
3120 NC_002945.4 3695922 . N . . . . GT ./.
|
|
|
3121 NC_002945.4 3695923 . N . . . . GT ./.
|
|
|
3122 NC_002945.4 3695924 . N . . . . GT ./.
|
|
|
3123 NC_002945.4 3695925 . N . . . . GT ./.
|
|
|
3124 NC_002945.4 3695926 . N . . . . GT ./.
|
|
|
3125 NC_002945.4 3695927 . N . . . . GT ./.
|
|
|
3126 NC_002945.4 3695928 . N . . . . GT ./.
|
|
|
3127 NC_002945.4 3695929 . N . . . . GT ./.
|
|
|
3128 NC_002945.4 3695930 . N . . . . GT ./.
|
|
|
3129 NC_002945.4 3695931 . N . . . . GT ./.
|
|
|
3130 NC_002945.4 3695932 . N . . . . GT ./.
|
|
|
3131 NC_002945.4 3695933 . N . . . . GT ./.
|
|
|
3132 NC_002945.4 3695934 . N . . . . GT ./.
|
|
|
3133 NC_002945.4 3695935 . N . . . . GT ./.
|
|
|
3134 NC_002945.4 3695936 . N . . . . GT ./.
|
|
|
3135 NC_002945.4 3695937 . N . . . . GT ./.
|
|
|
3136 NC_002945.4 3695938 . N . . . . GT ./.
|
|
|
3137 NC_002945.4 3695939 . N . . . . GT ./.
|
|
|
3138 NC_002945.4 3695940 . N . . . . GT ./.
|
|
|
3139 NC_002945.4 3695941 . N . . . . GT ./.
|
|
|
3140 NC_002945.4 3695942 . N . . . . GT ./.
|
|
|
3141 NC_002945.4 3695943 . N . . . . GT ./.
|
|
|
3142 NC_002945.4 3695944 . N . . . . GT ./.
|
|
|
3143 NC_002945.4 3695945 . N . . . . GT ./.
|
|
|
3144 NC_002945.4 3695946 . N . . . . GT ./.
|
|
|
3145 NC_002945.4 3695947 . N . . . . GT ./.
|
|
|
3146 NC_002945.4 3695948 . N . . . . GT ./.
|
|
|
3147 NC_002945.4 3695949 . N . . . . GT ./.
|
|
|
3148 NC_002945.4 3695950 . N . . . . GT ./.
|
|
|
3149 NC_002945.4 3695951 . N . . . . GT ./.
|
|
|
3150 NC_002945.4 3695952 . N . . . . GT ./.
|
|
|
3151 NC_002945.4 3695953 . N . . . . GT ./.
|
|
|
3152 NC_002945.4 3695954 . N . . . . GT ./.
|
|
|
3153 NC_002945.4 3695955 . N . . . . GT ./.
|
|
|
3154 NC_002945.4 3695956 . N . . . . GT ./.
|
|
|
3155 NC_002945.4 3695957 . N . . . . GT ./.
|
|
|
3156 NC_002945.4 3695958 . N . . . . GT ./.
|
|
|
3157 NC_002945.4 3695959 . N . . . . GT ./.
|
|
|
3158 NC_002945.4 3695960 . N . . . . GT ./.
|
|
|
3159 NC_002945.4 3695961 . N . . . . GT ./.
|
|
|
3160 NC_002945.4 3695962 . N . . . . GT ./.
|
|
|
3161 NC_002945.4 3695963 . N . . . . GT ./.
|
|
|
3162 NC_002945.4 3695964 . N . . . . GT ./.
|
|
|
3163 NC_002945.4 3695965 . N . . . . GT ./.
|
|
|
3164 NC_002945.4 3695966 . N . . . . GT ./.
|
|
|
3165 NC_002945.4 3695967 . N . . . . GT ./.
|
|
|
3166 NC_002945.4 3695968 . N . . . . GT ./.
|
|
|
3167 NC_002945.4 3695969 . N . . . . GT ./.
|
|
|
3168 NC_002945.4 3695970 . N . . . . GT ./.
|
|
|
3169 NC_002945.4 3695971 . N . . . . GT ./.
|
|
|
3170 NC_002945.4 3695972 . N . . . . GT ./.
|
|
|
3171 NC_002945.4 3695973 . N . . . . GT ./.
|
|
|
3172 NC_002945.4 3695974 . N . . . . GT ./.
|
|
|
3173 NC_002945.4 3695975 . N . . . . GT ./.
|
|
|
3174 NC_002945.4 3695976 . N . . . . GT ./.
|
|
|
3175 NC_002945.4 3695977 . N . . . . GT ./.
|
|
|
3176 NC_002945.4 3695978 . N . . . . GT ./.
|
|
|
3177 NC_002945.4 3695979 . N . . . . GT ./.
|
|
|
3178 NC_002945.4 3695980 . N . . . . GT ./.
|
|
|
3179 NC_002945.4 3695981 . N . . . . GT ./.
|
|
|
3180 NC_002945.4 3695982 . N . . . . GT ./.
|
|
|
3181 NC_002945.4 3695983 . N . . . . GT ./.
|
|
|
3182 NC_002945.4 3695984 . N . . . . GT ./.
|
|
|
3183 NC_002945.4 3695985 . N . . . . GT ./.
|
|
|
3184 NC_002945.4 3695986 . N . . . . GT ./.
|
|
|
3185 NC_002945.4 3695987 . N . . . . GT ./.
|
|
|
3186 NC_002945.4 3695988 . N . . . . GT ./.
|
|
|
3187 NC_002945.4 3695989 . N . . . . GT ./.
|
|
|
3188 NC_002945.4 3695990 . N . . . . GT ./.
|
|
|
3189 NC_002945.4 3695991 . N . . . . GT ./.
|
|
|
3190 NC_002945.4 3695992 . N . . . . GT ./.
|
|
|
3191 NC_002945.4 3695993 . N . . . . GT ./.
|
|
|
3192 NC_002945.4 3695994 . N . . . . GT ./.
|
|
|
3193 NC_002945.4 3695995 . N . . . . GT ./.
|
|
|
3194 NC_002945.4 3695996 . N . . . . GT ./.
|
|
|
3195 NC_002945.4 3695997 . N . . . . GT ./.
|
|
|
3196 NC_002945.4 3695998 . N . . . . GT ./.
|
|
|
3197 NC_002945.4 3695999 . N . . . . GT ./.
|
|
|
3198 NC_002945.4 3696000 . N . . . . GT ./.
|
|
|
3199 NC_002945.4 3696001 . N . . . . GT ./.
|
|
|
3200 NC_002945.4 3696002 . N . . . . GT ./.
|
|
|
3201 NC_002945.4 3696003 . N . . . . GT ./.
|
|
|
3202 NC_002945.4 3696004 . N . . . . GT ./.
|
|
|
3203 NC_002945.4 3696005 . N . . . . GT ./.
|
|
|
3204 NC_002945.4 3696006 . N . . . . GT ./.
|
|
|
3205 NC_002945.4 3696007 . N . . . . GT ./.
|
|
|
3206 NC_002945.4 3696008 . N . . . . GT ./.
|
|
|
3207 NC_002945.4 3696009 . N . . . . GT ./.
|
|
|
3208 NC_002945.4 3696010 . N . . . . GT ./.
|
|
|
3209 NC_002945.4 3696011 . N . . . . GT ./.
|
|
|
3210 NC_002945.4 3696012 . N . . . . GT ./.
|
|
|
3211 NC_002945.4 3696013 . N . . . . GT ./.
|
|
|
3212 NC_002945.4 3696014 . N . . . . GT ./.
|
|
|
3213 NC_002945.4 3696015 . N . . . . GT ./.
|
|
|
3214 NC_002945.4 3696016 . N . . . . GT ./.
|
|
|
3215 NC_002945.4 3696017 . N . . . . GT ./.
|
|
|
3216 NC_002945.4 3696018 . N . . . . GT ./.
|
|
|
3217 NC_002945.4 3696019 . N . . . . GT ./.
|
|
|
3218 NC_002945.4 3696020 . N . . . . GT ./.
|
|
|
3219 NC_002945.4 3696021 . N . . . . GT ./.
|
|
|
3220 NC_002945.4 3696022 . N . . . . GT ./.
|
|
|
3221 NC_002945.4 3696023 . N . . . . GT ./.
|
|
|
3222 NC_002945.4 3696024 . N . . . . GT ./.
|
|
|
3223 NC_002945.4 3696025 . N . . . . GT ./.
|
|
|
3224 NC_002945.4 3696026 . N . . . . GT ./.
|
|
|
3225 NC_002945.4 3696027 . N . . . . GT ./.
|
|
|
3226 NC_002945.4 3696028 . N . . . . GT ./.
|
|
|
3227 NC_002945.4 3696029 . N . . . . GT ./.
|
|
|
3228 NC_002945.4 3696030 . N . . . . GT ./.
|
|
|
3229 NC_002945.4 3696031 . N . . . . GT ./.
|
|
|
3230 NC_002945.4 3696032 . N . . . . GT ./.
|
|
|
3231 NC_002945.4 3696033 . N . . . . GT ./.
|
|
|
3232 NC_002945.4 3696034 . N . . . . GT ./.
|
|
|
3233 NC_002945.4 3696035 . N . . . . GT ./.
|
|
|
3234 NC_002945.4 3696036 . N . . . . GT ./.
|
|
|
3235 NC_002945.4 3696037 . N . . . . GT ./.
|
|
|
3236 NC_002945.4 3696038 . N . . . . GT ./.
|
|
|
3237 NC_002945.4 3696039 . N . . . . GT ./.
|
|
|
3238 NC_002945.4 3696040 . N . . . . GT ./.
|
|
|
3239 NC_002945.4 3696041 . N . . . . GT ./.
|
|
|
3240 NC_002945.4 3696042 . N . . . . GT ./.
|
|
|
3241 NC_002945.4 3696043 . N . . . . GT ./.
|
|
|
3242 NC_002945.4 3696044 . N . . . . GT ./.
|
|
|
3243 NC_002945.4 3696045 . N . . . . GT ./.
|
|
|
3244 NC_002945.4 3696046 . N . . . . GT ./.
|
|
|
3245 NC_002945.4 3696047 . N . . . . GT ./.
|
|
|
3246 NC_002945.4 3696048 . N . . . . GT ./.
|
|
|
3247 NC_002945.4 3696049 . N . . . . GT ./.
|
|
|
3248 NC_002945.4 3696050 . N . . . . GT ./.
|
|
|
3249 NC_002945.4 3696051 . N . . . . GT ./.
|
|
|
3250 NC_002945.4 3696052 . N . . . . GT ./.
|
|
|
3251 NC_002945.4 3696053 . N . . . . GT ./.
|
|
|
3252 NC_002945.4 3696054 . N . . . . GT ./.
|
|
|
3253 NC_002945.4 3696055 . N . . . . GT ./.
|
|
|
3254 NC_002945.4 3696056 . N . . . . GT ./.
|
|
|
3255 NC_002945.4 3696057 . N . . . . GT ./.
|
|
|
3256 NC_002945.4 3696058 . N . . . . GT ./.
|
|
|
3257 NC_002945.4 3696059 . N . . . . GT ./.
|
|
|
3258 NC_002945.4 3696060 . N . . . . GT ./.
|
|
|
3259 NC_002945.4 3696061 . N . . . . GT ./.
|
|
|
3260 NC_002945.4 3696062 . N . . . . GT ./.
|
|
|
3261 NC_002945.4 3696063 . N . . . . GT ./.
|
|
|
3262 NC_002945.4 3696064 . N . . . . GT ./.
|
|
|
3263 NC_002945.4 3696065 . N . . . . GT ./.
|
|
|
3264 NC_002945.4 3696066 . N . . . . GT ./.
|
|
|
3265 NC_002945.4 3696067 . N . . . . GT ./.
|
|
|
3266 NC_002945.4 3696068 . N . . . . GT ./.
|
|
|
3267 NC_002945.4 3696069 . N . . . . GT ./.
|
|
|
3268 NC_002945.4 3696070 . N . . . . GT ./.
|
|
|
3269 NC_002945.4 3696071 . N . . . . GT ./.
|
|
|
3270 NC_002945.4 3696072 . N . . . . GT ./.
|
|
|
3271 NC_002945.4 3696073 . N . . . . GT ./.
|
|
|
3272 NC_002945.4 3696074 . N . . . . GT ./.
|
|
|
3273 NC_002945.4 3696075 . N . . . . GT ./.
|
|
|
3274 NC_002945.4 3696076 . N . . . . GT ./.
|
|
|
3275 NC_002945.4 3696077 . N . . . . GT ./.
|
|
|
3276 NC_002945.4 3696078 . N . . . . GT ./.
|
|
|
3277 NC_002945.4 3696079 . N . . . . GT ./.
|
|
|
3278 NC_002945.4 3696080 . N . . . . GT ./.
|
|
|
3279 NC_002945.4 3696081 . N . . . . GT ./.
|
|
|
3280 NC_002945.4 3696082 . N . . . . GT ./.
|
|
|
3281 NC_002945.4 3696083 . N . . . . GT ./.
|
|
|
3282 NC_002945.4 3696084 . N . . . . GT ./.
|
|
|
3283 NC_002945.4 3696085 . N . . . . GT ./.
|
|
|
3284 NC_002945.4 3696086 . N . . . . GT ./.
|
|
|
3285 NC_002945.4 3696087 . N . . . . GT ./.
|
|
|
3286 NC_002945.4 3696088 . N . . . . GT ./.
|
|
|
3287 NC_002945.4 3696089 . N . . . . GT ./.
|
|
|
3288 NC_002945.4 3696090 . N . . . . GT ./.
|
|
|
3289 NC_002945.4 3696091 . N . . . . GT ./.
|
|
|
3290 NC_002945.4 3696092 . N . . . . GT ./.
|
|
|
3291 NC_002945.4 3696093 . N . . . . GT ./.
|
|
|
3292 NC_002945.4 3696094 . N . . . . GT ./.
|
|
|
3293 NC_002945.4 3696095 . N . . . . GT ./.
|
|
|
3294 NC_002945.4 3696096 . N . . . . GT ./.
|
|
|
3295 NC_002945.4 3696097 . N . . . . GT ./.
|
|
|
3296 NC_002945.4 3696098 . N . . . . GT ./.
|
|
|
3297 NC_002945.4 3696099 . N . . . . GT ./.
|
|
|
3298 NC_002945.4 3696100 . N . . . . GT ./.
|
|
|
3299 NC_002945.4 3696101 . N . . . . GT ./.
|
|
|
3300 NC_002945.4 3696102 . N . . . . GT ./.
|
|
|
3301 NC_002945.4 3696103 . N . . . . GT ./.
|
|
|
3302 NC_002945.4 3696104 . N . . . . GT ./.
|
|
|
3303 NC_002945.4 3696105 . N . . . . GT ./.
|
|
|
3304 NC_002945.4 3696106 . N . . . . GT ./.
|
|
|
3305 NC_002945.4 3696107 . N . . . . GT ./.
|
|
|
3306 NC_002945.4 3696108 . N . . . . GT ./.
|
|
|
3307 NC_002945.4 3696109 . N . . . . GT ./.
|
|
|
3308 NC_002945.4 3696110 . N . . . . GT ./.
|
|
|
3309 NC_002945.4 3696111 . N . . . . GT ./.
|
|
|
3310 NC_002945.4 3696112 . N . . . . GT ./.
|
|
|
3311 NC_002945.4 3696113 . N . . . . GT ./.
|
|
|
3312 NC_002945.4 3696114 . N . . . . GT ./.
|
|
|
3313 NC_002945.4 3696115 . N . . . . GT ./.
|
|
|
3314 NC_002945.4 3696116 . N . . . . GT ./.
|
|
|
3315 NC_002945.4 3696117 . N . . . . GT ./.
|
|
|
3316 NC_002945.4 3696118 . N . . . . GT ./.
|
|
|
3317 NC_002945.4 3696119 . N . . . . GT ./.
|
|
|
3318 NC_002945.4 3696120 . N . . . . GT ./.
|
|
|
3319 NC_002945.4 3696121 . N . . . . GT ./.
|
|
|
3320 NC_002945.4 3696122 . N . . . . GT ./.
|
|
|
3321 NC_002945.4 3696123 . N . . . . GT ./.
|
|
|
3322 NC_002945.4 3696124 . N . . . . GT ./.
|
|
|
3323 NC_002945.4 3696125 . N . . . . GT ./.
|
|
|
3324 NC_002945.4 3696126 . N . . . . GT ./.
|
|
|
3325 NC_002945.4 3696127 . N . . . . GT ./.
|
|
|
3326 NC_002945.4 3696128 . N . . . . GT ./.
|
|
|
3327 NC_002945.4 3696129 . N . . . . GT ./.
|
|
|
3328 NC_002945.4 3696130 . N . . . . GT ./.
|
|
|
3329 NC_002945.4 3696131 . N . . . . GT ./.
|
|
|
3330 NC_002945.4 3696132 . N . . . . GT ./.
|
|
|
3331 NC_002945.4 3696133 . N . . . . GT ./.
|
|
|
3332 NC_002945.4 3696134 . N . . . . GT ./.
|
|
|
3333 NC_002945.4 3696135 . N . . . . GT ./.
|
|
|
3334 NC_002945.4 3696145 . G T 760.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=-1.551;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.43;ReadPosRankSum=2.484;SOR=1.329 GT:AD:DP:GQ:PL 1/1:1,24:25:35:789,35,0
|
|
|
3335 NC_002945.4 3719802 . A G 9597.77 . AC=2;AF=1.00;AN=2;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.90;SOR=0.750 GT:AD:DP:GQ:PL 1/1:0,321:321:99:9626,957,0
|
|
|
3336 NC_002945.4 3723554 . C G 8935.77 . AC=2;AF=1.00;AN=2;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.29;SOR=0.924 GT:AD:DP:GQ:PL 1/1:0,295:295:99:8964,880,0
|
|
|
3337 NC_002945.4 3725203 . G A 5796.77 . AC=2;AF=1.00;AN=2;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.00;SOR=1.340 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5825,615,0
|
|
|
3338 NC_002945.4 3729351 . G T 6787.77 . AC=2;AF=1.00;AN=2;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.01;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,234:234:99:6816,698,0
|
|
|
3339 NC_002945.4 3748712 . C T 9633.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=2.684;ClippingRankSum=0.000;DP=344;ExcessHet=3.0103;FS=3.005;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.17;ReadPosRankSum=-0.738;SOR=0.131 GT:AD:DP:GQ:PL 1/1:2,340:342:99:9662,997,0
|
|
|
3340 NC_002945.4 3776764 . A G 8489.77 . AC=2;AF=1.00;AN=2;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.68;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,268:268:99:8518,798,0
|
|
|
3341 NC_002945.4 3777253 . G C 2855.78 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=9.182;MLEAC=1;MLEAF=0.500;MQ=51.39;MQRankSum=0.710;QD=27.53;ReadPosRankSum=1.695;SOR=1.373 GT:AD:DP:GQ:PL 0/1:2,69:71:24:2884,0,24
|
|
|
3342 NC_002945.4 3777256 . T G 2862.80 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.255;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=10.233;MLEAC=1;MLEAF=0.500;MQ=50.53;MQRankSum=1.972;QD=22.58;ReadPosRankSum=3.800;SOR=1.370 GT:AD:DP:GQ:PL 0/1:7,71:78:21:2891,0,21
|
|
|
3343 NC_002945.4 3778473 . A G 7425.77 . AC=2;AF=1.00;AN=2;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.47;SOR=1.184 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7454,703,0
|
|
|
3344 NC_002945.4 3805467 . T C 9167.77 . AC=2;AF=1.00;AN=2;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.48;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,311:311:99:9196,926,0
|
|
|
3345 NC_002945.4 3816878 . T C 8032.77 . AC=2;AF=1.00;AN=2;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.66;SOR=0.910 GT:AD:DP:GQ:PL 1/1:0,262:262:99:8061,783,0
|
|
|
3346 NC_002945.4 3836507 . T C 182.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.357;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=33.74;MQRankSum=-4.196;QD=9.62;ReadPosRankSum=-0.077;SOR=0.602 GT:AD:DP:GQ:PL 0/1:10,9:19:99:211,0,314
|
|
|
3347 NC_002945.4 3839650 . T C 8451.77 . AC=2;AF=1.00;AN=2;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.77;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,266:266:99:8480,795,0
|
|
|
3348 NC_002945.4 3849304 . G A 7782.77 . AC=2;AF=1.00;AN=2;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.37;SOR=1.286 GT:AD:DP:GQ:PL 1/1:0,265:265:99:7811,787,0
|
|
|
3349 NC_002945.4 3853789 . G A 3548.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.51;ReadPosRankSum=1.471;SOR=0.803 GT:AD:DP:GQ:PL 0/1:23,150:173:99:3577,0,155
|
|
|
3350 NC_002945.4 3872780 . T C 8193.77 . AC=2;AF=1.00;AN=2;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.85;SOR=0.875 GT:AD:DP:GQ:PL 1/1:0,284:284:99:8222,842,0
|
|
|
3351 NC_002945.4 3878214 . G C 54.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;ClippingRankSum=0.000;DP=14;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-1.641;SOR=1.609 GT:AD:DP:GQ:PL 0/1:10,4:14:83:83,0,272
|
|
|
3352 NC_002945.4 3878307 . G C 1025.77 . AC=2;AF=1.00;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.36;QD=26.99;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1054,111,0
|
|
|
3353 NC_002945.4 3881590 . N . . . . GT ./.
|
|
|
3354 NC_002945.4 3881591 . N . . . . GT ./.
|
|
|
3355 NC_002945.4 3881592 . N . . . . GT ./.
|
|
|
3356 NC_002945.4 3881593 . N . . . . GT ./.
|
|
|
3357 NC_002945.4 3881594 . N . . . . GT ./.
|
|
|
3358 NC_002945.4 3881595 . N . . . . GT ./.
|
|
|
3359 NC_002945.4 3881596 . N . . . . GT ./.
|
|
|
3360 NC_002945.4 3881597 . N . . . . GT ./.
|
|
|
3361 NC_002945.4 3881598 . N . . . . GT ./.
|
|
|
3362 NC_002945.4 3881599 . N . . . . GT ./.
|
|
|
3363 NC_002945.4 3881600 . N . . . . GT ./.
|
|
|
3364 NC_002945.4 3881601 . N . . . . GT ./.
|
|
|
3365 NC_002945.4 3881602 . N . . . . GT ./.
|
|
|
3366 NC_002945.4 3881603 . N . . . . GT ./.
|
|
|
3367 NC_002945.4 3881604 . N . . . . GT ./.
|
|
|
3368 NC_002945.4 3881605 . N . . . . GT ./.
|
|
|
3369 NC_002945.4 3881606 . N . . . . GT ./.
|
|
|
3370 NC_002945.4 3881607 . N . . . . GT ./.
|
|
|
3371 NC_002945.4 3881608 . N . . . . GT ./.
|
|
|
3372 NC_002945.4 3881609 . N . . . . GT ./.
|
|
|
3373 NC_002945.4 3881610 . N . . . . GT ./.
|
|
|
3374 NC_002945.4 3881611 . N . . . . GT ./.
|
|
|
3375 NC_002945.4 3881612 . N . . . . GT ./.
|
|
|
3376 NC_002945.4 3881613 . N . . . . GT ./.
|
|
|
3377 NC_002945.4 3881614 . N . . . . GT ./.
|
|
|
3378 NC_002945.4 3881615 . N . . . . GT ./.
|
|
|
3379 NC_002945.4 3881616 . N . . . . GT ./.
|
|
|
3380 NC_002945.4 3881617 . N . . . . GT ./.
|
|
|
3381 NC_002945.4 3881618 . N . . . . GT ./.
|
|
|
3382 NC_002945.4 3881619 . N . . . . GT ./.
|
|
|
3383 NC_002945.4 3881620 . N . . . . GT ./.
|
|
|
3384 NC_002945.4 3881621 . N . . . . GT ./.
|
|
|
3385 NC_002945.4 3881622 . N . . . . GT ./.
|
|
|
3386 NC_002945.4 3881623 . N . . . . GT ./.
|
|
|
3387 NC_002945.4 3881624 . N . . . . GT ./.
|
|
|
3388 NC_002945.4 3881625 . N . . . . GT ./.
|
|
|
3389 NC_002945.4 3881626 . N . . . . GT ./.
|
|
|
3390 NC_002945.4 3881627 . N . . . . GT ./.
|
|
|
3391 NC_002945.4 3881628 . N . . . . GT ./.
|
|
|
3392 NC_002945.4 3881629 . N . . . . GT ./.
|
|
|
3393 NC_002945.4 3881630 . N . . . . GT ./.
|
|
|
3394 NC_002945.4 3881631 . N . . . . GT ./.
|
|
|
3395 NC_002945.4 3881632 . N . . . . GT ./.
|
|
|
3396 NC_002945.4 3881633 . N . . . . GT ./.
|
|
|
3397 NC_002945.4 3881634 . N . . . . GT ./.
|
|
|
3398 NC_002945.4 3881635 . N . . . . GT ./.
|
|
|
3399 NC_002945.4 3881636 . N . . . . GT ./.
|
|
|
3400 NC_002945.4 3881637 . N . . . . GT ./.
|
|
|
3401 NC_002945.4 3881638 . N . . . . GT ./.
|
|
|
3402 NC_002945.4 3881639 . N . . . . GT ./.
|
|
|
3403 NC_002945.4 3881640 . N . . . . GT ./.
|
|
|
3404 NC_002945.4 3881641 . N . . . . GT ./.
|
|
|
3405 NC_002945.4 3881642 . N . . . . GT ./.
|
|
|
3406 NC_002945.4 3881643 . N . . . . GT ./.
|
|
|
3407 NC_002945.4 3881644 . N . . . . GT ./.
|
|
|
3408 NC_002945.4 3881645 . N . . . . GT ./.
|
|
|
3409 NC_002945.4 3881646 . N . . . . GT ./.
|
|
|
3410 NC_002945.4 3881647 . N . . . . GT ./.
|
|
|
3411 NC_002945.4 3881648 . N . . . . GT ./.
|
|
|
3412 NC_002945.4 3881649 . N . . . . GT ./.
|
|
|
3413 NC_002945.4 3881650 . N . . . . GT ./.
|
|
|
3414 NC_002945.4 3881651 . N . . . . GT ./.
|
|
|
3415 NC_002945.4 3881652 . N . . . . GT ./.
|
|
|
3416 NC_002945.4 3881653 . N . . . . GT ./.
|
|
|
3417 NC_002945.4 3881654 . N . . . . GT ./.
|
|
|
3418 NC_002945.4 3881655 . N . . . . GT ./.
|
|
|
3419 NC_002945.4 3881656 . N . . . . GT ./.
|
|
|
3420 NC_002945.4 3881657 . N . . . . GT ./.
|
|
|
3421 NC_002945.4 3881658 . N . . . . GT ./.
|
|
|
3422 NC_002945.4 3881659 . N . . . . GT ./.
|
|
|
3423 NC_002945.4 3881660 . N . . . . GT ./.
|
|
|
3424 NC_002945.4 3881661 . N . . . . GT ./.
|
|
|
3425 NC_002945.4 3881662 . N . . . . GT ./.
|
|
|
3426 NC_002945.4 3881663 . N . . . . GT ./.
|
|
|
3427 NC_002945.4 3881664 . N . . . . GT ./.
|
|
|
3428 NC_002945.4 3881665 . N . . . . GT ./.
|
|
|
3429 NC_002945.4 3881666 . N . . . . GT ./.
|
|
|
3430 NC_002945.4 3881667 . N . . . . GT ./.
|
|
|
3431 NC_002945.4 3881668 . N . . . . GT ./.
|
|
|
3432 NC_002945.4 3881669 . N . . . . GT ./.
|
|
|
3433 NC_002945.4 3881670 . N . . . . GT ./.
|
|
|
3434 NC_002945.4 3881671 . N . . . . GT ./.
|
|
|
3435 NC_002945.4 3881672 . N . . . . GT ./.
|
|
|
3436 NC_002945.4 3883512 . C T 97.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=2.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-3.780;SOR=1.688 GT:AD:DP:GQ:PL 0/1:35,8:43:99:126,0,979
|
|
|
3437 NC_002945.4 3883580 . G A 699.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.341;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=11.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=-1.501;SOR=0.085 GT:AD:DP:GQ:PL 0/1:32,28:60:99:728,0,1067
|
|
|
3438 NC_002945.4 3884519 . C T 607.77 . AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=0.053;SOR=0.653 GT:AD:DP:GQ:PL 0/1:34,27:61:99:636,0,819
|
|
|
3439 NC_002945.4 3890837 . G C 425.77 . AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=42.22;QD=26.40;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,11:11:33:454,33,0
|
|
|
3440 NC_002945.4 3890839 . C A 425.77 . AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=42.22;QD=26.29;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,11:11:33:454,33,0
|
|
|
3441 NC_002945.4 3895377 . N . . . . GT ./.
|
|
|
3442 NC_002945.4 3895378 . N . . . . GT ./.
|
|
|
3443 NC_002945.4 3895379 . N . . . . GT ./.
|
|
|
3444 NC_002945.4 3895380 . N . . . . GT ./.
|
|
|
3445 NC_002945.4 3895381 . N . . . . GT ./.
|
|
|
3446 NC_002945.4 3895382 . N . . . . GT ./.
|
|
|
3447 NC_002945.4 3895383 . N . . . . GT ./.
|
|
|
3448 NC_002945.4 3895384 . N . . . . GT ./.
|
|
|
3449 NC_002945.4 3895385 . N . . . . GT ./.
|
|
|
3450 NC_002945.4 3895386 . N . . . . GT ./.
|
|
|
3451 NC_002945.4 3895387 . N . . . . GT ./.
|
|
|
3452 NC_002945.4 3895388 . N . . . . GT ./.
|
|
|
3453 NC_002945.4 3895389 . N . . . . GT ./.
|
|
|
3454 NC_002945.4 3895390 . N . . . . GT ./.
|
|
|
3455 NC_002945.4 3895391 . N . . . . GT ./.
|
|
|
3456 NC_002945.4 3895392 . N . . . . GT ./.
|
|
|
3457 NC_002945.4 3895393 . N . . . . GT ./.
|
|
|
3458 NC_002945.4 3895394 . N . . . . GT ./.
|
|
|
3459 NC_002945.4 3895395 . N . . . . GT ./.
|
|
|
3460 NC_002945.4 3895396 . N . . . . GT ./.
|
|
|
3461 NC_002945.4 3895397 . N . . . . GT ./.
|
|
|
3462 NC_002945.4 3895398 . N . . . . GT ./.
|
|
|
3463 NC_002945.4 3895399 . N . . . . GT ./.
|
|
|
3464 NC_002945.4 3895400 . N . . . . GT ./.
|
|
|
3465 NC_002945.4 3895401 . N . . . . GT ./.
|
|
|
3466 NC_002945.4 3895402 . N . . . . GT ./.
|
|
|
3467 NC_002945.4 3895403 . N . . . . GT ./.
|
|
|
3468 NC_002945.4 3895404 . N . . . . GT ./.
|
|
|
3469 NC_002945.4 3895405 . N . . . . GT ./.
|
|
|
3470 NC_002945.4 3895406 . N . . . . GT ./.
|
|
|
3471 NC_002945.4 3895407 . N . . . . GT ./.
|
|
|
3472 NC_002945.4 3895408 . N . . . . GT ./.
|
|
|
3473 NC_002945.4 3895409 . N . . . . GT ./.
|
|
|
3474 NC_002945.4 3895410 . N . . . . GT ./.
|
|
|
3475 NC_002945.4 3895411 . N . . . . GT ./.
|
|
|
3476 NC_002945.4 3895412 . N . . . . GT ./.
|
|
|
3477 NC_002945.4 3895413 . N . . . . GT ./.
|
|
|
3478 NC_002945.4 3895414 . N . . . . GT ./.
|
|
|
3479 NC_002945.4 3895415 . N . . . . GT ./.
|
|
|
3480 NC_002945.4 3895416 . N . . . . GT ./.
|
|
|
3481 NC_002945.4 3895417 . N . . . . GT ./.
|
|
|
3482 NC_002945.4 3895418 . N . . . . GT ./.
|
|
|
3483 NC_002945.4 3895419 . N . . . . GT ./.
|
|
|
3484 NC_002945.4 3895420 . N . . . . GT ./.
|
|
|
3485 NC_002945.4 3895421 . N . . . . GT ./.
|
|
|
3486 NC_002945.4 3895422 . N . . . . GT ./.
|
|
|
3487 NC_002945.4 3895423 . N . . . . GT ./.
|
|
|
3488 NC_002945.4 3895424 . N . . . . GT ./.
|
|
|
3489 NC_002945.4 3895425 . N . . . . GT ./.
|
|
|
3490 NC_002945.4 3895426 . N . . . . GT ./.
|
|
|
3491 NC_002945.4 3895427 . N . . . . GT ./.
|
|
|
3492 NC_002945.4 3895428 . N . . . . GT ./.
|
|
|
3493 NC_002945.4 3895429 . N . . . . GT ./.
|
|
|
3494 NC_002945.4 3895430 . N . . . . GT ./.
|
|
|
3495 NC_002945.4 3895431 . N . . . . GT ./.
|
|
|
3496 NC_002945.4 3895432 . N . . . . GT ./.
|
|
|
3497 NC_002945.4 3895433 . N . . . . GT ./.
|
|
|
3498 NC_002945.4 3895434 . N . . . . GT ./.
|
|
|
3499 NC_002945.4 3895435 . N . . . . GT ./.
|
|
|
3500 NC_002945.4 3895436 . N . . . . GT ./.
|
|
|
3501 NC_002945.4 3895437 . N . . . . GT ./.
|
|
|
3502 NC_002945.4 3895438 . N . . . . GT ./.
|
|
|
3503 NC_002945.4 3895439 . N . . . . GT ./.
|
|
|
3504 NC_002945.4 3895440 . N . . . . GT ./.
|
|
|
3505 NC_002945.4 3895441 . N . . . . GT ./.
|
|
|
3506 NC_002945.4 3895442 . N . . . . GT ./.
|
|
|
3507 NC_002945.4 3895443 . N . . . . GT ./.
|
|
|
3508 NC_002945.4 3895444 . N . . . . GT ./.
|
|
|
3509 NC_002945.4 3895445 . N . . . . GT ./.
|
|
|
3510 NC_002945.4 3895446 . N . . . . GT ./.
|
|
|
3511 NC_002945.4 3895447 . N . . . . GT ./.
|
|
|
3512 NC_002945.4 3895521 . N . . . . GT ./.
|
|
|
3513 NC_002945.4 3895522 . N . . . . GT ./.
|
|
|
3514 NC_002945.4 3895523 . N . . . . GT ./.
|
|
|
3515 NC_002945.4 3895524 . N . . . . GT ./.
|
|
|
3516 NC_002945.4 3895525 . N . . . . GT ./.
|
|
|
3517 NC_002945.4 3895526 . N . . . . GT ./.
|
|
|
3518 NC_002945.4 3895527 . N . . . . GT ./.
|
|
|
3519 NC_002945.4 3895528 . N . . . . GT ./.
|
|
|
3520 NC_002945.4 3895529 . N . . . . GT ./.
|
|
|
3521 NC_002945.4 3895530 . N . . . . GT ./.
|
|
|
3522 NC_002945.4 3895531 . N . . . . GT ./.
|
|
|
3523 NC_002945.4 3895532 . N . . . . GT ./.
|
|
|
3524 NC_002945.4 3895533 . N . . . . GT ./.
|
|
|
3525 NC_002945.4 3895534 . N . . . . GT ./.
|
|
|
3526 NC_002945.4 3895535 . N . . . . GT ./.
|
|
|
3527 NC_002945.4 3895536 . N . . . . GT ./.
|
|
|
3528 NC_002945.4 3895537 . N . . . . GT ./.
|
|
|
3529 NC_002945.4 3895538 . N . . . . GT ./.
|
|
|
3530 NC_002945.4 3895539 . N . . . . GT ./.
|
|
|
3531 NC_002945.4 3895540 . N . . . . GT ./.
|
|
|
3532 NC_002945.4 3895541 . N . . . . GT ./.
|
|
|
3533 NC_002945.4 3895542 . N . . . . GT ./.
|
|
|
3534 NC_002945.4 3895543 . N . . . . GT ./.
|
|
|
3535 NC_002945.4 3895544 . N . . . . GT ./.
|
|
|
3536 NC_002945.4 3895545 . N . . . . GT ./.
|
|
|
3537 NC_002945.4 3895546 . N . . . . GT ./.
|
|
|
3538 NC_002945.4 3895547 . N . . . . GT ./.
|
|
|
3539 NC_002945.4 3895548 . N . . . . GT ./.
|
|
|
3540 NC_002945.4 3895549 . N . . . . GT ./.
|
|
|
3541 NC_002945.4 3895550 . N . . . . GT ./.
|
|
|
3542 NC_002945.4 3895551 . N . . . . GT ./.
|
|
|
3543 NC_002945.4 3895552 . N . . . . GT ./.
|
|
|
3544 NC_002945.4 3895553 . N . . . . GT ./.
|
|
|
3545 NC_002945.4 3895554 . N . . . . GT ./.
|
|
|
3546 NC_002945.4 3895555 . N . . . . GT ./.
|
|
|
3547 NC_002945.4 3895556 . N . . . . GT ./.
|
|
|
3548 NC_002945.4 3895557 . N . . . . GT ./.
|
|
|
3549 NC_002945.4 3895558 . N . . . . GT ./.
|
|
|
3550 NC_002945.4 3895559 . N . . . . GT ./.
|
|
|
3551 NC_002945.4 3895560 . N . . . . GT ./.
|
|
|
3552 NC_002945.4 3895561 . N . . . . GT ./.
|
|
|
3553 NC_002945.4 3895562 . N . . . . GT ./.
|
|
|
3554 NC_002945.4 3895563 . N . . . . GT ./.
|
|
|
3555 NC_002945.4 3895564 . N . . . . GT ./.
|
|
|
3556 NC_002945.4 3895565 . N . . . . GT ./.
|
|
|
3557 NC_002945.4 3895566 . N . . . . GT ./.
|
|
|
3558 NC_002945.4 3895567 . N . . . . GT ./.
|
|
|
3559 NC_002945.4 3895568 . N . . . . GT ./.
|
|
|
3560 NC_002945.4 3895569 . N . . . . GT ./.
|
|
|
3561 NC_002945.4 3895570 . N . . . . GT ./.
|
|
|
3562 NC_002945.4 3895571 . N . . . . GT ./.
|
|
|
3563 NC_002945.4 3895572 . N . . . . GT ./.
|
|
|
3564 NC_002945.4 3895573 . N . . . . GT ./.
|
|
|
3565 NC_002945.4 3895574 . N . . . . GT ./.
|
|
|
3566 NC_002945.4 3895575 . N . . . . GT ./.
|
|
|
3567 NC_002945.4 3895576 . N . . . . GT ./.
|
|
|
3568 NC_002945.4 3895577 . N . . . . GT ./.
|
|
|
3569 NC_002945.4 3895578 . N . . . . GT ./.
|
|
|
3570 NC_002945.4 3895579 . N . . . . GT ./.
|
|
|
3571 NC_002945.4 3895580 . N . . . . GT ./.
|
|
|
3572 NC_002945.4 3895581 . N . . . . GT ./.
|
|
|
3573 NC_002945.4 3895582 . N . . . . GT ./.
|
|
|
3574 NC_002945.4 3895583 . N . . . . GT ./.
|
|
|
3575 NC_002945.4 3895584 . N . . . . GT ./.
|
|
|
3576 NC_002945.4 3895585 . N . . . . GT ./.
|
|
|
3577 NC_002945.4 3895586 . N . . . . GT ./.
|
|
|
3578 NC_002945.4 3895587 . N . . . . GT ./.
|
|
|
3579 NC_002945.4 3895588 . N . . . . GT ./.
|
|
|
3580 NC_002945.4 3895589 . N . . . . GT ./.
|
|
|
3581 NC_002945.4 3895590 . N . . . . GT ./.
|
|
|
3582 NC_002945.4 3895591 . N . . . . GT ./.
|
|
|
3583 NC_002945.4 3895592 . N . . . . GT ./.
|
|
|
3584 NC_002945.4 3895593 . N . . . . GT ./.
|
|
|
3585 NC_002945.4 3895594 . N . . . . GT ./.
|
|
|
3586 NC_002945.4 3895595 . N . . . . GT ./.
|
|
|
3587 NC_002945.4 3895596 . N . . . . GT ./.
|
|
|
3588 NC_002945.4 3895597 . N . . . . GT ./.
|
|
|
3589 NC_002945.4 3895598 . N . . . . GT ./.
|
|
|
3590 NC_002945.4 3895599 . N . . . . GT ./.
|
|
|
3591 NC_002945.4 3895600 . N . . . . GT ./.
|
|
|
3592 NC_002945.4 3895601 . N . . . . GT ./.
|
|
|
3593 NC_002945.4 3895602 . N . . . . GT ./.
|
|
|
3594 NC_002945.4 3895603 . N . . . . GT ./.
|
|
|
3595 NC_002945.4 3895604 . N . . . . GT ./.
|
|
|
3596 NC_002945.4 3895605 . N . . . . GT ./.
|
|
|
3597 NC_002945.4 3895606 . N . . . . GT ./.
|
|
|
3598 NC_002945.4 3895607 . N . . . . GT ./.
|
|
|
3599 NC_002945.4 3895608 . N . . . . GT ./.
|
|
|
3600 NC_002945.4 3895609 . N . . . . GT ./.
|
|
|
3601 NC_002945.4 3895610 . N . . . . GT ./.
|
|
|
3602 NC_002945.4 3895611 . N . . . . GT ./.
|
|
|
3603 NC_002945.4 3895612 . N . . . . GT ./.
|
|
|
3604 NC_002945.4 3895613 . N . . . . GT ./.
|
|
|
3605 NC_002945.4 3895614 . N . . . . GT ./.
|
|
|
3606 NC_002945.4 3895615 . N . . . . GT ./.
|
|
|
3607 NC_002945.4 3895616 . N . . . . GT ./.
|
|
|
3608 NC_002945.4 3895617 . N . . . . GT ./.
|
|
|
3609 NC_002945.4 3895618 . N . . . . GT ./.
|
|
|
3610 NC_002945.4 3895619 . N . . . . GT ./.
|
|
|
3611 NC_002945.4 3895620 . N . . . . GT ./.
|
|
|
3612 NC_002945.4 3895621 . N . . . . GT ./.
|
|
|
3613 NC_002945.4 3895622 . N . . . . GT ./.
|
|
|
3614 NC_002945.4 3895623 . N . . . . GT ./.
|
|
|
3615 NC_002945.4 3895624 . N . . . . GT ./.
|
|
|
3616 NC_002945.4 3895625 . N . . . . GT ./.
|
|
|
3617 NC_002945.4 3895626 . N . . . . GT ./.
|
|
|
3618 NC_002945.4 3895627 . N . . . . GT ./.
|
|
|
3619 NC_002945.4 3895628 . N . . . . GT ./.
|
|
|
3620 NC_002945.4 3895629 . N . . . . GT ./.
|
|
|
3621 NC_002945.4 3895630 . N . . . . GT ./.
|
|
|
3622 NC_002945.4 3895631 . N . . . . GT ./.
|
|
|
3623 NC_002945.4 3895632 . N . . . . GT ./.
|
|
|
3624 NC_002945.4 3895633 . N . . . . GT ./.
|
|
|
3625 NC_002945.4 3895634 . N . . . . GT ./.
|
|
|
3626 NC_002945.4 3895635 . N . . . . GT ./.
|
|
|
3627 NC_002945.4 3895636 . N . . . . GT ./.
|
|
|
3628 NC_002945.4 3895637 . N . . . . GT ./.
|
|
|
3629 NC_002945.4 3895638 . N . . . . GT ./.
|
|
|
3630 NC_002945.4 3895639 . N . . . . GT ./.
|
|
|
3631 NC_002945.4 3895640 . N . . . . GT ./.
|
|
|
3632 NC_002945.4 3895641 . N . . . . GT ./.
|
|
|
3633 NC_002945.4 3895642 . N . . . . GT ./.
|
|
|
3634 NC_002945.4 3895643 . N . . . . GT ./.
|
|
|
3635 NC_002945.4 3895644 . N . . . . GT ./.
|
|
|
3636 NC_002945.4 3895645 . N . . . . GT ./.
|
|
|
3637 NC_002945.4 3895646 . N . . . . GT ./.
|
|
|
3638 NC_002945.4 3896539 . A G 18.59 . AC=2;AF=1.00;AN=2;DP=1;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=18.59;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,1:1:3:45,3,0
|
|
|
3639 NC_002945.4 3898533 . C T 6815.77 . AC=2;AF=1.00;AN=2;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.66;QD=29.38;SOR=0.984 GT:AD:DP:GQ:PL 1/1:0,232:232:99:6844,690,0
|
|
|
3640 NC_002945.4 3940591 . G A 7763.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;ClippingRankSum=0.000;DP=254;ExcessHet=3.0103;FS=4.789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=31.43;ReadPosRankSum=2.144;SOR=1.470 GT:AD:DP:GQ:PL 1/1:1,246:247:99:7792,724,0
|
|
|
3641 NC_002945.4 3941063 . G C 11172.73 . AC=2;AF=1.00;AN=2;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.14;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,250:250:99:11210,753,0
|
|
|
3642 NC_002945.4 3952423 . G A 4983.77 . AC=2;AF=1.00;AN=2;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.84;SOR=1.098 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5012,526,0
|
|
|
3643 NC_002945.4 3957298 . C T 7547.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=4.158;MLEAC=2;MLEAF=1.00;MQ=59.93;MQRankSum=-0.047;QD=32.39;ReadPosRankSum=0.870;SOR=2.667 GT:AD:DP:GQ:PL 1/1:2,231:233:99:7576,671,0
|
|
|
3644 NC_002945.4 3966871 . G A 8379.77 . AC=2;AF=1.00;AN=2;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.82;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,281:281:99:8408,837,0
|
|
|
3645 NC_002945.4 3969490 . T C 8758.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.929;ClippingRankSum=0.000;DP=286;ExcessHet=3.0103;FS=3.134;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.63;ReadPosRankSum=3.022;SOR=0.325 GT:AD:DP:GQ:PL 1/1:1,285:286:99:8787,843,0
|
|
|
3646 NC_002945.4 3980068 . N . . . . GT ./.
|
|
|
3647 NC_002945.4 3980069 . N . . . . GT ./.
|
|
|
3648 NC_002945.4 3980070 . N . . . . GT ./.
|
|
|
3649 NC_002945.4 3980071 . N . . . . GT ./.
|
|
|
3650 NC_002945.4 3980072 . N . . . . GT ./.
|
|
|
3651 NC_002945.4 3980073 . N . . . . GT ./.
|
|
|
3652 NC_002945.4 3980074 . N . . . . GT ./.
|
|
|
3653 NC_002945.4 3980075 . N . . . . GT ./.
|
|
|
3654 NC_002945.4 3980076 . N . . . . GT ./.
|
|
|
3655 NC_002945.4 3980077 . N . . . . GT ./.
|
|
|
3656 NC_002945.4 3980078 . N . . . . GT ./.
|
|
|
3657 NC_002945.4 3980079 . N . . . . GT ./.
|
|
|
3658 NC_002945.4 3980080 . N . . . . GT ./.
|
|
|
3659 NC_002945.4 3980081 . N . . . . GT ./.
|
|
|
3660 NC_002945.4 3980082 . N . . . . GT ./.
|
|
|
3661 NC_002945.4 3980083 . N . . . . GT ./.
|
|
|
3662 NC_002945.4 3980084 . N . . . . GT ./.
|
|
|
3663 NC_002945.4 3980085 . N . . . . GT ./.
|
|
|
3664 NC_002945.4 3980086 . N . . . . GT ./.
|
|
|
3665 NC_002945.4 3980087 . N . . . . GT ./.
|
|
|
3666 NC_002945.4 3980088 . N . . . . GT ./.
|
|
|
3667 NC_002945.4 3980089 . N . . . . GT ./.
|
|
|
3668 NC_002945.4 3980090 . N . . . . GT ./.
|
|
|
3669 NC_002945.4 3980091 . N . . . . GT ./.
|
|
|
3670 NC_002945.4 3980092 . N . . . . GT ./.
|
|
|
3671 NC_002945.4 3980093 . N . . . . GT ./.
|
|
|
3672 NC_002945.4 3980094 . N . . . . GT ./.
|
|
|
3673 NC_002945.4 3980095 . N . . . . GT ./.
|
|
|
3674 NC_002945.4 3980096 . N . . . . GT ./.
|
|
|
3675 NC_002945.4 3980097 . N . . . . GT ./.
|
|
|
3676 NC_002945.4 4007648 . C T 5958.77 . AC=2;AF=1.00;AN=2;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.38;SOR=0.970 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5987,623,0
|
|
|
3677 NC_002945.4 4010760 . T C 6949.77 . AC=2;AF=1.00;AN=2;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.03;SOR=0.861 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6978,649,0
|
|
|
3678 NC_002945.4 4017697 . G C 7625.77 . AC=2;AF=1.00;AN=2;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.35;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,269:269:99:7654,798,0
|
|
|
3679 NC_002945.4 4046956 . G A 9476.77 . AC=2;AF=1.00;AN=2;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.07;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,326:326:99:9505,974,0
|
|
|
3680 NC_002945.4 4085392 . A G 5041.77 . AC=2;AF=1.00;AN=2;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.61;SOR=1.641 GT:AD:DP:GQ:PL 1/1:0,150:150:99:5070,448,0
|
|
|
3681 NC_002945.4 4096612 . T G 10812.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.998;ClippingRankSum=0.000;DP=357;ExcessHet=3.0103;FS=3.097;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.46;ReadPosRankSum=1.096;SOR=0.296 GT:AD:DP:GQ:PL 1/1:1,354:355:99:10841,1051,0
|
|
|
3682 NC_002945.4 4107082 . C T 3179.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=13.568;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.87;ReadPosRankSum=2.652;SOR=2.732 GT:AD:DP:GQ:PL 1/1:2,101:103:99:3208,285,0
|
|
|
3683 NC_002945.4 4107438 . G A 3527.77 . AC=2;AF=1.00;AN=2;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.91;QD=25.38;SOR=1.510 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3556,404,0
|
|
|
3684 NC_002945.4 4108797 . C T 6930.77 . AC=2;AF=1.00;AN=2;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.88;SOR=1.484 GT:AD:DP:GQ:PL 1/1:0,240:240:99:6959,708,0
|
|
|
3685 NC_002945.4 4130927 . A C 6203.77 . AC=2;AF=1.00;AN=2;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.02;SOR=0.911 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6232,597,0
|
|
|
3686 NC_002945.4 4149101 . C A 9931.77 . AC=2;AF=1.00;AN=2;BaseQRankSum=1.967;ClippingRankSum=0.000;DP=342;ExcessHet=3.0103;FS=3.218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.04;ReadPosRankSum=-0.409;SOR=0.385 GT:AD:DP:GQ:PL 1/1:1,341:342:99:9960,1009,0
|
|
|
3687 NC_002945.4 4160782 . A G 10900.77 . AC=2;AF=1.00;AN=2;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.53;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,357:357:99:10929,1066,0
|
|
|
3688 NC_002945.4 4162554 . T C 5497.77 . AC=2;AF=1.00;AN=2;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.53;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5526,506,0
|
|
|
3689 NC_002945.4 4173149 . G A 7268.77 . AC=2;AF=1.00;AN=2;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.45;SOR=3.496 GT:AD:DP:GQ:PL 1/1:0,211:211:99:7297,623,0
|
|
|
3690 NC_002945.4 4178582 . C T 9122.77 . AC=2;AF=1.00;AN=2;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.43;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,310:310:99:9151,925,0
|
|
|
3691 NC_002945.4 4180986 . A G 8466.77 . AC=2;AF=1.00;AN=2;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.90;SOR=0.900 GT:AD:DP:GQ:PL 1/1:0,274:274:99:8495,820,0
|
|
|
3692 NC_002945.4 4191866 . G A 11591.77 . AC=2;AF=1.00;AN=2;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.27;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,396:396:99:11620,1182,0
|
|
|
3693 NC_002945.4 4215627 . C T 8118.77 . AC=2;AF=1.00;AN=2;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.19;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,288:288:99:8147,856,0
|
|
|
3694 NC_002945.4 4259281 . T C 2243.77 . AC=2;AF=1.00;AN=2;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=39.70;QD=31.41;SOR=8.051 GT:AD:DP:GQ:PL 1/1:0,55:55:99:2272,164,0
|
|
|
3695 NC_002945.4 4293934 . N . . . . GT ./.
|
|
|
3696 NC_002945.4 4293935 . N . . . . GT ./.
|
|
|
3697 NC_002945.4 4293936 . N . . . . GT ./.
|
|
|
3698 NC_002945.4 4293937 . N . . . . GT ./.
|
|
|
3699 NC_002945.4 4293938 . N . . . . GT ./.
|
|
|
3700 NC_002945.4 4293939 . N . . . . GT ./.
|
|
|
3701 NC_002945.4 4293940 . N . . . . GT ./.
|
|
|
3702 NC_002945.4 4293941 . N . . . . GT ./.
|
|
|
3703 NC_002945.4 4293942 . N . . . . GT ./.
|
|
|
3704 NC_002945.4 4293943 . N . . . . GT ./.
|
|
|
3705 NC_002945.4 4293944 . N . . . . GT ./.
|
|
|
3706 NC_002945.4 4293945 . N . . . . GT ./.
|
|
|
3707 NC_002945.4 4293946 . N . . . . GT ./.
|
|
|
3708 NC_002945.4 4293947 . N . . . . GT ./.
|
|
|
3709 NC_002945.4 4293948 . N . . . . GT ./.
|
|
|
3710 NC_002945.4 4293949 . N . . . . GT ./.
|
|
|
3711 NC_002945.4 4293950 . N . . . . GT ./.
|
|
|
3712 NC_002945.4 4293951 . N . . . . GT ./.
|
|
|
3713 NC_002945.4 4293952 . N . . . . GT ./.
|
|
|
3714 NC_002945.4 4294031 . N . . . . GT ./.
|
|
|
3715 NC_002945.4 4294032 . N . . . . GT ./.
|
|
|
3716 NC_002945.4 4294033 . N . . . . GT ./.
|
|
|
3717 NC_002945.4 4294034 . N . . . . GT ./.
|
|
|
3718 NC_002945.4 4294035 . N . . . . GT ./.
|
|
|
3719 NC_002945.4 4294036 . N . . . . GT ./.
|
|
|
3720 NC_002945.4 4294037 . N . . . . GT ./.
|
|
|
3721 NC_002945.4 4294038 . N . . . . GT ./.
|
|
|
3722 NC_002945.4 4294039 . N . . . . GT ./.
|
|
|
3723 NC_002945.4 4294040 . N . . . . GT ./.
|
|
|
3724 NC_002945.4 4294041 . N . . . . GT ./.
|
|
|
3725 NC_002945.4 4294042 . N . . . . GT ./.
|
|
|
3726 NC_002945.4 4294043 . N . . . . GT ./.
|
|
|
3727 NC_002945.4 4294044 . N . . . . GT ./.
|
|
|
3728 NC_002945.4 4294045 . N . . . . GT ./.
|
|
|
3729 NC_002945.4 4294046 . N . . . . GT ./.
|
|
|
3730 NC_002945.4 4294047 . N . . . . GT ./.
|
|
|
3731 NC_002945.4 4294048 . N . . . . GT ./.
|
|
|
3732 NC_002945.4 4294049 . N . . . . GT ./.
|
|
|
3733 NC_002945.4 4294050 . N . . . . GT ./.
|
|
|
3734 NC_002945.4 4294051 . N . . . . GT ./.
|
|
|
3735 NC_002945.4 4294052 . N . . . . GT ./.
|
|
|
3736 NC_002945.4 4294053 . N . . . . GT ./.
|
|
|
3737 NC_002945.4 4294054 . N . . . . GT ./.
|
|
|
3738 NC_002945.4 4294055 . N . . . . GT ./.
|
|
|
3739 NC_002945.4 4294056 . N . . . . GT ./.
|
|
|
3740 NC_002945.4 4294057 . N . . . . GT ./.
|
|
|
3741 NC_002945.4 4294058 . N . . . . GT ./.
|
|
|
3742 NC_002945.4 4294059 . N . . . . GT ./.
|
|
|
3743 NC_002945.4 4294060 . N . . . . GT ./.
|
|
|
3744 NC_002945.4 4294061 . N . . . . GT ./.
|
|
|
3745 NC_002945.4 4294062 . N . . . . GT ./.
|
|
|
3746 NC_002945.4 4294063 . N . . . . GT ./.
|
|
|
3747 NC_002945.4 4294064 . N . . . . GT ./.
|
|
|
3748 NC_002945.4 4294065 . N . . . . GT ./.
|
|
|
3749 NC_002945.4 4294066 . N . . . . GT ./.
|
|
|
3750 NC_002945.4 4294067 . N . . . . GT ./.
|
|
|
3751 NC_002945.4 4294068 . N . . . . GT ./.
|
|
|
3752 NC_002945.4 4294069 . N . . . . GT ./.
|
|
|
3753 NC_002945.4 4294070 . N . . . . GT ./.
|
|
|
3754 NC_002945.4 4294071 . N . . . . GT ./.
|
|
|
3755 NC_002945.4 4294072 . N . . . . GT ./.
|
|
|
3756 NC_002945.4 4294073 . N . . . . GT ./.
|
|
|
3757 NC_002945.4 4294074 . N . . . . GT ./.
|
|
|
3758 NC_002945.4 4294075 . N . . . . GT ./.
|
|
|
3759 NC_002945.4 4294076 . N . . . . GT ./.
|
|
|
3760 NC_002945.4 4294077 . N . . . . GT ./.
|
|
|
3761 NC_002945.4 4298265 . T C 5021.77 . AC=2;AF=1.00;AN=2;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.04;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,152:152:99:5050,454,0
|
|
|
3762 NC_002945.4 4311302 . C T 10501.77 . AC=2;AF=1.00;AN=2;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.18;SOR=0.740 GT:AD:DP:GQ:PL 1/1:0,348:348:99:10530,1036,0
|
|
|
3763 NC_002945.4 4311425 . C T 9110.77 . AC=2;AF=1.00;AN=2;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.48;SOR=0.823 GT:AD:DP:GQ:PL 1/1:0,309:309:99:9139,923,0
|
|
|
3764 NC_002945.4 4321337 . T C 8414.77 . AC=2;AF=1.00;AN=2;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.28;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,269:269:99:8443,805,0
|
|
|
3765 NC_002945.4 4339036 . T G 6217.77 . AC=2;AF=1.00;AN=2;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.88;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,223:223:99:6246,660,0
|
