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comparison test-data/all_vcf2.fasta @ 4:da20c7c76d06 draft

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author greg
date Thu, 17 Jun 2021 13:23:41 +0000
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children 2286f3a13e4d
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3:14285a94fb13 4:da20c7c76d06
1 >01_1787_FL_Zoo_Jaguar_vcf
2 ATCTTGTGCAGCAGCCGGCGTCGTGTGACTATGGTCTGCGACTCTACGTGAGACTCTTGGCTGGTTCTCGGATCAGTCCATTTATGGCCACCTTCATGGGGTTCAAAACTACGCGGCTAAGCTGTCATACCAGATTGAGCACGGTGCGCGAACGCCCGATGAGCCACCGTCTTCGAAGGGCAAAATAGTCCCCCATTGGCACGCGTCCAGCCCGCAGGTGGTACGTTTGTCGTCAATACCACCACTAACACCAAATTAGCCACCTTCGAGGAGGCGTGGTAGGAGCGCGGTTGGTCACCCCATACCGTAAACAACGCTTTCGCAAGCACACGGACCCGTGCGTCATACCAGGCTTAGGACATGGTCTACATACGGCACGCTGCCAGGCAACGGTTGGTAATTTAAGCATACCGAGGAGAACACTCTCCCTTGCGGGGAACGACCTGCAGAGCCACGTAGTGACAGACCAGGCTCCGACTATTGGCAAAGTGTATTCTGAAGTGGGCCCGCACATTGTAGTTGTTAGTATCGAATAGAGCCCAGCGGTGTACGTCCAGCAATAGCTGAACATCCGAGGCATAATGGTTACAGTAGAATCCAAGTCTAACGTGGCACYTACGGCCACAGACTGACTAGGGGCTTTGGCTGGGGAACGAAATGTGTGATGACTTGCGGTATGGAGAGGGATCCGACCCGGTTCAGTAACAAGGTGGTCGTTCGCAGCGCGCTGCTATTTCCTGGACATGACACCTCTCCTCCACTGCGCAGCCTCTAAGGTACGTCCCTTGCGGCGCCCATTTTGACCCCACTATATCGACAGCGTCTTCACTCTGCTGCTACGTCC
3 >BCG_Pasteur_Unknown_FR_SRR8886989_vcf
4 GTNCCTNATGTNGATTAATGCAGCACTNTGATGGTCGATAC-TATNNCCNATNTCTCCGGCTCGC-NTCAACCGCCTATATNNGCGCGGGGCTCTGCTTGCAGCNGCNGCGGATNCGCGGCNNNNNNNTNTCGNGAAGCTGGGACCTGATGGNACCCCCCNGCCN-NAANTCGTAGTCTTTNCNGCGCCCNNNTGGCNAGTTGACCTT--TCTGTGNNCAGTNTACCCATTTCTGACGCGGNNGCNGGCGCCNNGNCGATCGACGCT-GGCCNATCCCACCNANAGCGAGTCAACNGNCTCGNGNTACGNCCGGAGACCTGNAGGACGANGACCTTCANGAGNGCTANGGAGTCGGAGGTNNTACGTGTGCGTTTTATCNCAGGGAACGATTACNAGCGGNTNGGGTGCNTTC--GNNGGCGTNTCGNTCNACTCCACGAACTAC-TGTGAAT-NAGGNCAGTGAGTAGGGTCCTAGGGGCCAATNAGGGGGGTTCTGAGCCACNTTTATCTGACTCGAGNNCGGACGCANAGCNAATNNAGAAANAGGCTNCTTGTGGGGGCYCAAGTGCANAAAANGGAGC-ACCGTGNTNGAANCTCNGCGCNGCAGACTGGTCGCAGTTGGGGGTTAGGTGNAAATCNCGGGCACAANGTGTGGGGCATGACCGACCAT-GCGCNGCAAGAGGCATAGTTTGTCTNGGCCGTGTACGTG--GTCTACCACGGNTNAGCACCCATTNNNTGCAGNGNTCCCNNTTCCGCACTAGGAGCACCGATCG-TCNTCNCATACCATTTAGCCTCAACTCATCACAAT-NAGNTTCTNTTGTCACAATCNCCNANGT
5 >02_0585_COA_TX_Fed_vcf
6 ATCTTGTGCGGCAGCCGGCGTCATGTGACTGCAAACTGCGACTCTACGTGGGACTCTTGGTCGGCTCCAGGATCAGGCCGTTTGTGCCCACCCTCATGGTGTTTAAAACTACGCGGCTAAGCTGTCATACCAAATTGGGCACAGTCCGCTAACACATCATGACTCGCCGTCTTCGGAGGGTACAATAGTTCCCCATTGGCACACGTCCAGCTCGCAGGTGGCACGTTTGCTGTTAATATCACCATTAACAATAAATTGGCTACCTCCGAGGAGGCGTGGTAGGAGCGCGGTCGGCCACTCCATACCGTAAATGACGCTTTCGCAAGCAAACGGACTTATTCCTCATGCCAGACTTAGGACATGGTCTACATACGTCACGCTGCCAAGCAACGGTTGGTAATTTAAGCACACCGGGGAGAGAATTCTCCCTTGTGGGGAAAGACCTGCGGAGCCACGTGGTGACAGACCATTCTACGACTATTAGCAGAATATATTCTGAAGTGGGCCCGTACATTGTAGGTGTTAGCACAGGACAGAGCCCAGCGGTATACGCCCAGGAATAGCTGAACGTCCGGGGCATGATGGTCACAGTAGTCTTCAAGTCTAACGTGGTAGYCACGGCCAGGAGCTGACTAGGGGCTTCGAGTGGGGAACAAAATGTGTAATGACTTGCGGCACGAAGGGGGGCCCGACCCAGCCCAATAACAAAGTGATCACCCGTAGACCGCTGCTGTTTCCGGGACATGACACCTTTCCTCCAGTGCGCAGACTATAAGGTACGTCCCTTGCAGGGCTCCGCTTGACCCGGTTATGTCNACAGCGTCTTCACTCTGCCGCTACGTCC
7 >BCG_Tokyo_Unknown_JP_DRR029468_vcf
8 GTGCCTCATGTAGATTAATGCAGCACTCTGATGGTCGATACCTATCTCCCATGTCCCCCGCTCGCCATCAACCGCCTATATCAGCGCGGGGCTCTGCTTGCAGCGGCGGCGGATACGCGGCACGGTGTTTTCGAGAAGCTGGGACCTGATGGTACCCCCCAGCCT-TAATTCGTAGTCTTTGCCGCGCCCCTCTGTCGAGTTGACCTTGGTCTACGTACATTGTACCCATTTCTGACGCGGCTGCCGGCGCCGGGCCGATCGACGCTAGGCCAATCCCACCAAGAGCGATCCAACCGTCTAGTGTTACGACCGGAGACCCGAAGGAAGAAGACCTTCACGAGGGCTAGGGAGCCGGAGGTGCTACGCGTACGTTTTGTCTCAGGGAACGGTTACGGTCGGTTCGGGTGCGTTCGAGGAGGCGTCTCGTTCTACTCCACGAACTACGTGTGAATCTAGGACAGTGAGCAGGGTCCTAGGGGCCAATGAGGGGGGTTCTGAGCCGCGTTTATCTGACTCGAGAGCGGACGCAAAGCAGGTTCAGAAAGAGGCTCCTTGTGGGGGCTCAGGNGCACAAAGGGGAGCAACCGTGAGGGAACCTCGGCGCGGTAGACTGGTCGCAATTGGGGGTCAGGTGCAAACCGCGGGCAGAAGGTGAGGGATACGACCAACCATAGCGCAGCAAGAGGCATAGTTTGTCTGGGCCGTGTACGTG--GTCTACCACGGGCCAGTACCCANTTTATGCAGCGGCCCCTTGTCCGCATGAGGAGCATCGATCGCTCCTCCCATACCATTCAGCCCCGATTCATCGCAATNCAGATTCTTCTGCCACAATCTCCGATGT
9 >02_5877_MEX_TX_Fed_vcf
10 ACCTTGTGCGGCAGCCGGCATCATGTGACTACAAATTGCGACCCCACGTGGGACTCTTGACTGACTCCAGGATCAGTCCAATTGTACCCACTCTCATGGTGTTCAAAACTACGCGGCTAAGCTGTCATACCAAATTGGGCACGGTCCTCTAACATACCATGACTCGCCGTCTTCGGAGGGTACAATAGTTCCCCATTGGCACGCGTCCAGCTCGCAGGTGGCACGTTTGTTGTTACTACCACCATTAATACTAAATTGGCYACGTCCGAAGAGGCGTGGTAGGAGCGCGGTCGGCCACTCCATACCGTAAATGACTCTTTCGCAAGCAAACGGACTCATGCCTCACGCCAGACTTAGCACATGGTCTACATACGTCACGCTGCCAAGGAACGGTTGGTAATCTAAACACACCGG-AAGAGAATTCTCCCTTGCGGGGAAAGACCTACGGAGCCACGTGGTGACAGACCATTCTCCGACTATTAGCAGAATGTACCTCAGAGTGGGCCCGTACATTGTAGGTGTTAGCACAGAACAGAGCCCAGCGGTATACGCCCAGGAATAGCTGAACGTCCGAGGCATGATGGTCACAGTAATCTTCAAATCTAACGTGGTAGYCATGGCCAGGGGCTGACCAGGGGCTTCAGGTGGGGAACGAAATGTGTACTGACTTGCGACACGGAGGAGAGCCCGACCCGGCCCAGTAACAAAGTGACCACCCGTAGACCGCTGCTATTTCCGGGACATGACACCTCTCCTCTAGTGCGCATACTATAAGGTACGTCCTTTGCAGCGCTCAGCTTGACCCCATTATATCGACAGCGTCTTCACTCTGCCGCTACGTCC
11 >root
12 ATCTTTTGCGTCAGCCGGCGCCGTGTGACTATGGTCGGCGATTCTACGTGAGACCCCTGGCTGGCTCTCGGATCACTCCATTTGTGCCCACCTTCGTGGGGATCAAAACTACGCGGGTGACCTATCAGACCCGGTTGGCCGCGGTCCGCTAACACCCCATGACCCGCCGCTTTCGGAGGGTACAGCAGTCGCTCATTAGCACGCGTCCGACCCGCAGGTGGTACATCCGTTGTTAACACCATCGCTAACACCAAATTGGCCACCTCCGGGCAGGCCTCATCGGAGCGGGGTCGGCGGCCTCGCACCGCAGACGGCGCCCTCGCAAGCAACCGGACTCATGCGTCATACCAGGCTTAGGACATGGTCTACATACGTCACGCTGCCAAGCAATGGTTGGTAACTTAAGCACACCGGGGAGGGCATTCCCCCTGGCGCCGATAGACATGTGGAGCCACGTGGTGGCAGACCAGGTTCTGGCTGTCAACAAGGTGTATTCTGAAGTGCCTTCGTACATTGCAAGGCTTAGCACAGAACCGAGCTCAACGATGTACGCCCAGGAAGAGCTGAATGTCTAAGGCAGAATGGTCACAGTAGAATCCAAGTCTAGCGTGGTAGCCACGGCCGGGGGCTGACTAGGGGCTTCGGGTGGGGAGCGAAATGTGTGATGACTTACGGCGCGGAGAGAGGCCCGGCCCGGCTCAGTAACAAACTGGTTGTCCGCAGCGCTCTGCCATTTCCTGGGCATGATACCTCTCCTCCAGTGCGCAGACCATAAGGCGTGTTCCTTGCAGCGCTCAGCCTGAACCCATTATATCAACAGCGCCGTTACTCTGCTGCTACGCGC