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comparison test-data/all_vcf3.fasta @ 4:da20c7c76d06 draft

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author greg
date Thu, 17 Jun 2021 13:23:41 +0000
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3:14285a94fb13 4:da20c7c76d06
1 >01_1787_FL_Zoo_Jaguar_vcf
2 ATCTTGTGCACAGCCGGCGTCGTGTGACTATGTGCGATCTACGTGAGACTCTTGGCGGTTCGGATCAGTCCATTATGGCCACTTCATGGGGTCAAAACTACGCGGCTAAGCTCAACCAGATTGAGCACGGTGCGCGAACGCCCGATGAGCCACCGTCTCGAAGGGCAAAATAGTCCCCCATTGGCACGCGTCGCCCGCAGGGTACGTTTGTCGTCAATACCACCACTAACACCAAATTAGCACCTTCGAGGAGGCGTGGTAGGAGGTTGGTCACCCCATACCGTAAACAACGCTTTCGCAAGCACACGGACCCGTGCGTCATACAGGCTTAGGACATGGTCTACATACGGCCGTGCCAGGCAACGGTTGGTAATTTAACATACCGGAGAACACTCTCCCTTGCGGGGAACGACCTGCAGAGCCCGTAGTGACAGACCAGGCTCCGACTATTGGCAAAGTGTATTCTGAAGGCGACATTGAGTTTAGTTCGAATAGAGCCAGCGGTGTACGTCCAGCAATAGCTGAAATCCGAGGCAAATGGTTACAGTAGAATCCAATCTAACGTGGCATACGGCCACAGACTGACTAGGGGCTTTGGCTGGGGAACGAAATGTGTGATGACTTGCGGTATGGAGAGGGATCCGACCCGGTTCAGTAACAAGTGGTCGTTCGCAGCGCGCTGCTATTTCCTGGACATGACACCTCTCCTCCACTGCGCAGCCTCTAAGGTAGTCCCTTGCGGCGCCCATTTTGACCCCACTATATCACAGCGTCTTCACTCTGCGCTACGTCC
3 >BCG_Pasteur_Unknown_FR_SRR8886989_vcf
4 GTNCCTNATGNGATTAATGCAGCACTNTGATGGATACTATNNCCNATNTCTCCGGCCGC-NAACCGCCTATATNGCGCGGGGTCTGCTTGCGCNGCNGCGGATNCGCGGCNNNNTNTCGNGAAGCTGGGACCTGATGGNACCCCCCNGCCN-NAANTCTAGTCTTTNCNGCGCCCNNNTGGCNAGTTGACCT-TCTGTGNNGTNTACCCATTTCTGACGCGGNNGCNGGCGCCNNGNCGATGACGCT-GGCCNATCCCACCNANAGTCAACNGNCTCGNGNTACGNCCGGAGACCTGNAGGACGANGACCTTCANGAGNGCTAGGAGTCGGAGGTNNTACGTGTGCGTTTTTCCAGGGAACGATTACNAGCGGNTNGGTGCNTTCGNNGGCGTNTCGNTCNACTCCACGAACTAC-TGTGAATNAGGNCAGTGAGTAGGGTCCTAGGGGCCAATNAGGGGGGTTCTGAGACTACTGACTGAGCGGACCANAGCNAATNAGAAANAGGCTNCTTGTGGGGGCYCAAGGCANAAAANGAGC-ACCGTGNTNGAANCTCNCGCNGCAGACTGCGCAGTTGGGGGTTAGGTGNAAATCNCGGGCACAANGTGTGGGGCATGACCGACCAT-GCGCNGCAAGAGGCATAGTTTGTCTNGGCCGTGTAGTG--GTCTACCACGGNTNAGCACCCATTNNNTGCAGNGNTCCCNNTTCCGCACTAGGAGCACCGATCGTCNTCNCATACCATTTAGCCTCAACTCATCACAATNAGNTTCTNTTGTCACAACNCCNANGT
5 >02_0585_COA_TX_Fed_vcf
6 ATCTTGTGCGCAGCCGGCGTCATGTGACTGCATGCGATCTACGTGGGACTCTTGGTGGCTCGGATCAGGCCGTTGTGCCCACCTCATGGTGTTAAAACTACGCGGCTAAGCTCAACCAAATTGGGCACAGTCCGCTAACACATCATGACTCGCCGTCTCGGAGGGTACAATAGTTCCCCATTGGCACACGTCGCTCGCAGGGCACGTTTGCTGTTAATATCACCATTAACAATAAATTGGCACCTCCGAGGAGGCGTGGTAGGAGGTCGGCCACTCCATACCGTAAATGACGCTTTCGCAAGCAAACGGACTTATTCCTCATGCAGACTTAGGACATGGTCTACATACGTCCGTGCCAAGCAACGGTTGGTAATTTAACACACCGGAGAGAATTCTCCCTTGTGGGGAAAGACCTGCGGAGCCCGTGGTGACAGACCATTCTACGACTATTAGCAGAATATATTCTGAAGGCGACATTGAGGTTAGCCAGGACAGAGCCAGCGGTATACGCCCAGGAATAGCTGAAGTCCGGGGCAGATGGTCACAGTAGTCTTCAATCTAACGTGGTACACGGCCAGGAGCTGACTAGGGGCTTCGAGTGGGGAACAAAATGTGTAATGACTTGCGGCACGAAGGGGGGCCCGACCCAGCCCAATAACAAATGATCACCCGTAGACCGCTGCTGTTTCCGGGACATGACACCTTTCCTCCAGTGCGCAGACTATAAGGTAGTCCCTTGCAGGGCTCCGCTTGACCCGGTTATGTCACAGCGTCTTCACTCTGCGCTACGTCC
7 >BCG_Tokyo_Unknown_JP_DRR029468_vcf
8 GTGCCTCATGAGATTAATGCAGCACTCTGATGGATACTATCTCCCATGTCCCCCGCCGCCAAACCGCCTATATCGCGCGGGGTCTGCTTGCGCGGCGGCGGATACGCGGCACTGTTTCGAGAAGCTGGGACCTGATGGTACCCCCCAGCCT-TAATTCTAGTCTTTGCCGCGCCCCTCTGTCGAGTTGACCTGTCTACGTATTGTACCCATTTCTGACGCGGCTGCCGGCGCCGGGCCGATGACGCTAGGCCAATCCCACCAAGATCCAACCGTCTAGTGTTACGACCGGAGACCCGAAGGAAGAAGACCTTCACGAGGGCTAGGAGCCGGAGGTGCTACGCGTACGTTTTTCCAGGGAACGGTTACGGTCGGTTCGGTGCGTTCGGAGGCGTCTCGTTCTACTCCACGAACTACGTGTGAATTAGGACAGTGAGCAGGGTCCTAGGGGCCAATGAGGGGGGTTCTGAGGCTACTGACTGAGCGGACCAAAGCAGGTCAGAAAGAGGCTCCTTGTGGGGGCTCAGGGCACAAAGGGAGCAACCGTGAGGGAACCTCGCGCGGTAGACTGCGCAATTGGGGGTCAGGTGCAAACCGCGGGCAGAAGGTGAGGGATACGACCAACCATAGCGCAGCAAGAGGCATAGTTTGTCTGGGCCGTGTAGTG--GTCTACCACGGGCCAGTACCCANTTTATGCAGCGGCCCCTTGTCCGCATGAGGAGCATCGATCGTCCTCCCATACCATTCAGCCCCGATTCATCGCAATCAGATTCTTCTGCCACAACTCCGATGT
9 >02_5877_MEX_TX_Fed_vcf
10 ACCTTGTGCGCAGCCGGCATCATGTGACTACATGCGACCCACGTGGGACTCTTGACGACTCGGATCAGTCCAATGTACCCACCTCATGGTGTCAAAACTACGCGGCTAAGCTCAACCAAATTGGGCACGGTCCTCTAACATACCATGACTCGCCGTCTCGGAGGGTACAATAGTTCCCCATTGGCACGCGTCGCTCGCAGGGCACGTTTGTTGTTACTACCACCATTAATACTAAATTGGCACGTCCGAAGAGGCGTGGTAGGAGGTCGGCCACTCCATACCGTAAATGACTCTTTCGCAAGCAAACGGACTCATGCCTCACGCAGACTTAGCACATGGTCTACATACGTCCGTGCCAAGGAACGGTTGGTAATCTAACACACCGAAGAGAATTCTCCCTTGCGGGGAAAGACCTACGGAGCCCGTGGTGACAGACCATTCTCCGACTATTAGCAGAATGTACCTCAGAGGCGACATTGAGGTTAGCCAGAACAGAGCCAGCGGTATACGCCCAGGAATAGCTGAAGTCCGAGGCAGATGGTCACAGTAATCTTCAATCTAACGTGGTACATGGCCAGGGGCTGACCAGGGGCTTCAGGTGGGGAACGAAATGTGTACTGACTTGCGACACGGAGGAGAGCCCGACCCGGCCCAGTAACAAATGACCACCCGTAGACCGCTGCTATTTCCGGGACATGACACCTCTCCTCTAGTGCGCATACTATAAGGTAGTCCTTTGCAGCGCTCAGCTTGACCCCATTATATCACAGCGTCTTCACTCTGCGCTACGTCC
11 >root
12 ATCTTTTGCGCAGCCGGCGCCGTGTGACTATGGGCGATCTACGTGAGACCCCTGGCGGCTCGGATCACTCCATTGTGCCCACTTCGTGGGGTCAAAACTACGCGGGTGACCTCAACCCGGTTGGCCGCGGTCCGCTAACACCCCATGACCCGCCGCTTCGGAGGGTACAGCAGTCGCTCATTAGCACGCGTCACCCGCAGGGTACATCCGTTGTTAACACCATCGCTAACACCAAATTGGCACCTCCGGGCAGGCCTCATCGGAGGTCGGCGGCCTCGCACCGCAGACGGCGCCCTCGCAAGCAACCGGACTCATGCGTCATACAGGCTTAGGACATGGTCTACATACGTCCGTGCCAAGCAATGGTTGGTAACTTAACACACCGGAGGGCATTCCCCCTGGCGCCGATAGACATGTGGAGCCCGTGGTGGCAGACCAGGTTCTGGCTGTCAACAAGGTGTATTCTGAAGCCGACATTGAAGTTAGCCAGAACCGAGTCAACGATGTACGCCCAGGAAGAGCTGAAGTCTAAGGCAAATGGTCACAGTAGAATCCAATCTAGCGTGGTACACGGCCGGGGGCTGACTAGGGGCTTCGGGTGGGGAGCGAAATGTGTGATGACTTACGGCGCGGAGAGAGGCCCGGCCCGGCTCAGTAACAAATGGTTGTCCGCAGCGCTCTGCCATTTCCTGGGCATGATACCTCTCCTCCAGTGCGCAGACCATAAGGCGGTTCCTTGCAGCGCTCAGCCTGAACCCATTATATCACAGCGCCGTTACTCTGCGCTACGCGC