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diff test-data/all_vcf2.fasta @ 7:2286f3a13e4d draft

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author greg
date Thu, 22 Jul 2021 18:02:12 +0000
parents da20c7c76d06
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--- a/test-data/all_vcf2.fasta	Fri Jun 18 18:12:16 2021 +0000
+++ b/test-data/all_vcf2.fasta	Thu Jul 22 18:02:12 2021 +0000
@@ -1,12 +1,6 @@
 >01_1787_FL_Zoo_Jaguar_vcf
-ATCTTGTGCAGCAGCCGGCGTCGTGTGACTATGGTCTGCGACTCTACGTGAGACTCTTGGCTGGTTCTCGGATCAGTCCATTTATGGCCACCTTCATGGGGTTCAAAACTACGCGGCTAAGCTGTCATACCAGATTGAGCACGGTGCGCGAACGCCCGATGAGCCACCGTCTTCGAAGGGCAAAATAGTCCCCCATTGGCACGCGTCCAGCCCGCAGGTGGTACGTTTGTCGTCAATACCACCACTAACACCAAATTAGCCACCTTCGAGGAGGCGTGGTAGGAGCGCGGTTGGTCACCCCATACCGTAAACAACGCTTTCGCAAGCACACGGACCCGTGCGTCATACCAGGCTTAGGACATGGTCTACATACGGCACGCTGCCAGGCAACGGTTGGTAATTTAAGCATACCGAGGAGAACACTCTCCCTTGCGGGGAACGACCTGCAGAGCCACGTAGTGACAGACCAGGCTCCGACTATTGGCAAAGTGTATTCTGAAGTGGGCCCGCACATTGTAGTTGTTAGTATCGAATAGAGCCCAGCGGTGTACGTCCAGCAATAGCTGAACATCCGAGGCATAATGGTTACAGTAGAATCCAAGTCTAACGTGGCACYTACGGCCACAGACTGACTAGGGGCTTTGGCTGGGGAACGAAATGTGTGATGACTTGCGGTATGGAGAGGGATCCGACCCGGTTCAGTAACAAGGTGGTCGTTCGCAGCGCGCTGCTATTTCCTGGACATGACACCTCTCCTCCACTGCGCAGCCTCTAAGGTACGTCCCTTGCGGCGCCCATTTTGACCCCACTATATCGACAGCGTCTTCACTCTGCTGCTACGTCC
 >BCG_Pasteur_Unknown_FR_SRR8886989_vcf
-GTNCCTNATGTNGATTAATGCAGCACTNTGATGGTCGATAC-TATNNCCNATNTCTCCGGCTCGC-NTCAACCGCCTATATNNGCGCGGGGCTCTGCTTGCAGCNGCNGCGGATNCGCGGCNNNNNNNTNTCGNGAAGCTGGGACCTGATGGNACCCCCCNGCCN-NAANTCGTAGTCTTTNCNGCGCCCNNNTGGCNAGTTGACCTT--TCTGTGNNCAGTNTACCCATTTCTGACGCGGNNGCNGGCGCCNNGNCGATCGACGCT-GGCCNATCCCACCNANAGCGAGTCAACNGNCTCGNGNTACGNCCGGAGACCTGNAGGACGANGACCTTCANGAGNGCTANGGAGTCGGAGGTNNTACGTGTGCGTTTTATCNCAGGGAACGATTACNAGCGGNTNGGGTGCNTTC--GNNGGCGTNTCGNTCNACTCCACGAACTAC-TGTGAAT-NAGGNCAGTGAGTAGGGTCCTAGGGGCCAATNAGGGGGGTTCTGAGCCACNTTTATCTGACTCGAGNNCGGACGCANAGCNAATNNAGAAANAGGCTNCTTGTGGGGGCYCAAGTGCANAAAANGGAGC-ACCGTGNTNGAANCTCNGCGCNGCAGACTGGTCGCAGTTGGGGGTTAGGTGNAAATCNCGGGCACAANGTGTGGGGCATGACCGACCAT-GCGCNGCAAGAGGCATAGTTTGTCTNGGCCGTGTACGTG--GTCTACCACGGNTNAGCACCCATTNNNTGCAGNGNTCCCNNTTCCGCACTAGGAGCACCGATCG-TCNTCNCATACCATTTAGCCTCAACTCATCACAAT-NAGNTTCTNTTGTCACAATCNCCNANGT
 >02_0585_COA_TX_Fed_vcf
-ATCTTGTGCGGCAGCCGGCGTCATGTGACTGCAAACTGCGACTCTACGTGGGACTCTTGGTCGGCTCCAGGATCAGGCCGTTTGTGCCCACCCTCATGGTGTTTAAAACTACGCGGCTAAGCTGTCATACCAAATTGGGCACAGTCCGCTAACACATCATGACTCGCCGTCTTCGGAGGGTACAATAGTTCCCCATTGGCACACGTCCAGCTCGCAGGTGGCACGTTTGCTGTTAATATCACCATTAACAATAAATTGGCTACCTCCGAGGAGGCGTGGTAGGAGCGCGGTCGGCCACTCCATACCGTAAATGACGCTTTCGCAAGCAAACGGACTTATTCCTCATGCCAGACTTAGGACATGGTCTACATACGTCACGCTGCCAAGCAACGGTTGGTAATTTAAGCACACCGGGGAGAGAATTCTCCCTTGTGGGGAAAGACCTGCGGAGCCACGTGGTGACAGACCATTCTACGACTATTAGCAGAATATATTCTGAAGTGGGCCCGTACATTGTAGGTGTTAGCACAGGACAGAGCCCAGCGGTATACGCCCAGGAATAGCTGAACGTCCGGGGCATGATGGTCACAGTAGTCTTCAAGTCTAACGTGGTAGYCACGGCCAGGAGCTGACTAGGGGCTTCGAGTGGGGAACAAAATGTGTAATGACTTGCGGCACGAAGGGGGGCCCGACCCAGCCCAATAACAAAGTGATCACCCGTAGACCGCTGCTGTTTCCGGGACATGACACCTTTCCTCCAGTGCGCAGACTATAAGGTACGTCCCTTGCAGGGCTCCGCTTGACCCGGTTATGTCNACAGCGTCTTCACTCTGCCGCTACGTCC
 >BCG_Tokyo_Unknown_JP_DRR029468_vcf
-GTGCCTCATGTAGATTAATGCAGCACTCTGATGGTCGATACCTATCTCCCATGTCCCCCGCTCGCCATCAACCGCCTATATCAGCGCGGGGCTCTGCTTGCAGCGGCGGCGGATACGCGGCACGGTGTTTTCGAGAAGCTGGGACCTGATGGTACCCCCCAGCCT-TAATTCGTAGTCTTTGCCGCGCCCCTCTGTCGAGTTGACCTTGGTCTACGTACATTGTACCCATTTCTGACGCGGCTGCCGGCGCCGGGCCGATCGACGCTAGGCCAATCCCACCAAGAGCGATCCAACCGTCTAGTGTTACGACCGGAGACCCGAAGGAAGAAGACCTTCACGAGGGCTAGGGAGCCGGAGGTGCTACGCGTACGTTTTGTCTCAGGGAACGGTTACGGTCGGTTCGGGTGCGTTCGAGGAGGCGTCTCGTTCTACTCCACGAACTACGTGTGAATCTAGGACAGTGAGCAGGGTCCTAGGGGCCAATGAGGGGGGTTCTGAGCCGCGTTTATCTGACTCGAGAGCGGACGCAAAGCAGGTTCAGAAAGAGGCTCCTTGTGGGGGCTCAGGNGCACAAAGGGGAGCAACCGTGAGGGAACCTCGGCGCGGTAGACTGGTCGCAATTGGGGGTCAGGTGCAAACCGCGGGCAGAAGGTGAGGGATACGACCAACCATAGCGCAGCAAGAGGCATAGTTTGTCTGGGCCGTGTACGTG--GTCTACCACGGGCCAGTACCCANTTTATGCAGCGGCCCCTTGTCCGCATGAGGAGCATCGATCGCTCCTCCCATACCATTCAGCCCCGATTCATCGCAATNCAGATTCTTCTGCCACAATCTCCGATGT
 >02_5877_MEX_TX_Fed_vcf
-ACCTTGTGCGGCAGCCGGCATCATGTGACTACAAATTGCGACCCCACGTGGGACTCTTGACTGACTCCAGGATCAGTCCAATTGTACCCACTCTCATGGTGTTCAAAACTACGCGGCTAAGCTGTCATACCAAATTGGGCACGGTCCTCTAACATACCATGACTCGCCGTCTTCGGAGGGTACAATAGTTCCCCATTGGCACGCGTCCAGCTCGCAGGTGGCACGTTTGTTGTTACTACCACCATTAATACTAAATTGGCYACGTCCGAAGAGGCGTGGTAGGAGCGCGGTCGGCCACTCCATACCGTAAATGACTCTTTCGCAAGCAAACGGACTCATGCCTCACGCCAGACTTAGCACATGGTCTACATACGTCACGCTGCCAAGGAACGGTTGGTAATCTAAACACACCGG-AAGAGAATTCTCCCTTGCGGGGAAAGACCTACGGAGCCACGTGGTGACAGACCATTCTCCGACTATTAGCAGAATGTACCTCAGAGTGGGCCCGTACATTGTAGGTGTTAGCACAGAACAGAGCCCAGCGGTATACGCCCAGGAATAGCTGAACGTCCGAGGCATGATGGTCACAGTAATCTTCAAATCTAACGTGGTAGYCATGGCCAGGGGCTGACCAGGGGCTTCAGGTGGGGAACGAAATGTGTACTGACTTGCGACACGGAGGAGAGCCCGACCCGGCCCAGTAACAAAGTGACCACCCGTAGACCGCTGCTATTTCCGGGACATGACACCTCTCCTCTAGTGCGCATACTATAAGGTACGTCCTTTGCAGCGCTCAGCTTGACCCCATTATATCGACAGCGTCTTCACTCTGCCGCTACGTCC
 >root
-ATCTTTTGCGTCAGCCGGCGCCGTGTGACTATGGTCGGCGATTCTACGTGAGACCCCTGGCTGGCTCTCGGATCACTCCATTTGTGCCCACCTTCGTGGGGATCAAAACTACGCGGGTGACCTATCAGACCCGGTTGGCCGCGGTCCGCTAACACCCCATGACCCGCCGCTTTCGGAGGGTACAGCAGTCGCTCATTAGCACGCGTCCGACCCGCAGGTGGTACATCCGTTGTTAACACCATCGCTAACACCAAATTGGCCACCTCCGGGCAGGCCTCATCGGAGCGGGGTCGGCGGCCTCGCACCGCAGACGGCGCCCTCGCAAGCAACCGGACTCATGCGTCATACCAGGCTTAGGACATGGTCTACATACGTCACGCTGCCAAGCAATGGTTGGTAACTTAAGCACACCGGGGAGGGCATTCCCCCTGGCGCCGATAGACATGTGGAGCCACGTGGTGGCAGACCAGGTTCTGGCTGTCAACAAGGTGTATTCTGAAGTGCCTTCGTACATTGCAAGGCTTAGCACAGAACCGAGCTCAACGATGTACGCCCAGGAAGAGCTGAATGTCTAAGGCAGAATGGTCACAGTAGAATCCAAGTCTAGCGTGGTAGCCACGGCCGGGGGCTGACTAGGGGCTTCGGGTGGGGAGCGAAATGTGTGATGACTTACGGCGCGGAGAGAGGCCCGGCCCGGCTCAGTAACAAACTGGTTGTCCGCAGCGCTCTGCCATTTCCTGGGCATGATACCTCTCCTCCAGTGCGCAGACCATAAGGCGTGTTCCTTGCAGCGCTCAGCCTGAACCCATTATATCAACAGCGCCGTTACTCTGCTGCTACGCGC