view test-data/SRR1792272_zc.vcf @ 2:7471707d3fb4 draft

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author greg
date Sat, 14 Nov 2020 09:16:04 +0000
parents ee4ef1fc23c6
children da20c7c76d06
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##fileformat=VCFv4.2
##fileDate=20190125
##source=freeBayes v1.2.0-dirty
##reference=/scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1792272/NC_002945v4.fasta
##contig=<ID=NC_002945.4,length=4349904>
##phasing=none
##commandline="freebayes -E -1 -e 1 -u --strict-vcf -f /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1792272/NC_002945v4.fasta /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1792272/SRR1792272-nodup.bam --region NC_002945.4:0-100000
##filter="QUAL > 20
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus">
##INFO=<ID=DPB,Number=1,Type=Float,Description="Total read depth per bp at the locus; bases in reads overlapping / bases in haplotype">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Total number of alternate alleles in called genotypes">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated allele frequency in the range (0,1]">
##INFO=<ID=RO,Number=1,Type=Integer,Description="Count of full observations of the reference haplotype.">
##INFO=<ID=AO,Number=A,Type=Integer,Description="Count of full observations of this alternate haplotype.">
##INFO=<ID=PRO,Number=1,Type=Float,Description="Reference allele observation count, with partial observations recorded fractionally">
##INFO=<ID=PAO,Number=A,Type=Float,Description="Alternate allele observations, with partial observations recorded fractionally">
##INFO=<ID=QR,Number=1,Type=Integer,Description="Reference allele quality sum in phred">
##INFO=<ID=QA,Number=A,Type=Integer,Description="Alternate allele quality sum in phred">
##INFO=<ID=PQR,Number=1,Type=Float,Description="Reference allele quality sum in phred for partial observations">
##INFO=<ID=PQA,Number=A,Type=Float,Description="Alternate allele quality sum in phred for partial observations">
##INFO=<ID=SRF,Number=1,Type=Integer,Description="Number of reference observations on the forward strand">
##INFO=<ID=SRR,Number=1,Type=Integer,Description="Number of reference observations on the reverse strand">
##INFO=<ID=SAF,Number=A,Type=Integer,Description="Number of alternate observations on the forward strand">
##INFO=<ID=SAR,Number=A,Type=Integer,Description="Number of alternate observations on the reverse strand">
##INFO=<ID=SRP,Number=1,Type=Float,Description="Strand balance probability for the reference allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SRF and SRR given E(SRF/SRR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=SAP,Number=A,Type=Float,Description="Strand balance probability for the alternate allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SAF and SAR given E(SAF/SAR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=AB,Number=A,Type=Float,Description="Allele balance at heterozygous sites: a number between 0 and 1 representing the ratio of reads showing the reference allele to all reads, considering only reads from individuals called as heterozygous">
##INFO=<ID=ABP,Number=A,Type=Float,Description="Allele balance probability at heterozygous sites: Phred-scaled upper-bounds estimate of the probability of observing the deviation between ABR and ABA given E(ABR/ABA) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=RUN,Number=A,Type=Integer,Description="Run length: the number of consecutive repeats of the alternate allele in the reference genome">
##INFO=<ID=RPP,Number=A,Type=Float,Description="Read Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=RPPR,Number=1,Type=Float,Description="Read Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=RPL,Number=A,Type=Float,Description="Reads Placed Left: number of reads supporting the alternate balanced to the left (5') of the alternate allele">
##INFO=<ID=RPR,Number=A,Type=Float,Description="Reads Placed Right: number of reads supporting the alternate balanced to the right (3') of the alternate allele">
##INFO=<ID=EPP,Number=A,Type=Float,Description="End Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=EPPR,Number=1,Type=Float,Description="End Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=DPRA,Number=A,Type=Float,Description="Alternate allele depth ratio.  Ratio between depth in samples with each called alternate allele and those without.">
##INFO=<ID=ODDS,Number=1,Type=Float,Description="The log odds ratio of the best genotype combination to the second-best.">
##INFO=<ID=GTI,Number=1,Type=Integer,Description="Number of genotyping iterations required to reach convergence or bailout.">
##INFO=<ID=TYPE,Number=A,Type=String,Description="The type of allele, either snp, mnp, ins, del, or complex.">
##INFO=<ID=CIGAR,Number=A,Type=String,Description="The extended CIGAR representation of each alternate allele, with the exception that '=' is replaced by 'M' to ease VCF parsing.  Note that INDEL alleles do not have the first matched base (which is provided by default, per the spec) referred to by the CIGAR.">
##INFO=<ID=NUMALT,Number=1,Type=Integer,Description="Number of unique non-reference alleles in called genotypes at this position.">
##INFO=<ID=MEANALT,Number=A,Type=Float,Description="Mean number of unique non-reference allele observations per sample with the corresponding alternate alleles.">
##INFO=<ID=LEN,Number=A,Type=Integer,Description="allele length">
##INFO=<ID=MQM,Number=A,Type=Float,Description="Mean mapping quality of observed alternate alleles">
##INFO=<ID=MQMR,Number=1,Type=Float,Description="Mean mapping quality of observed reference alleles">
##INFO=<ID=PAIRED,Number=A,Type=Float,Description="Proportion of observed alternate alleles which are supported by properly paired read fragments">
##INFO=<ID=PAIREDR,Number=1,Type=Float,Description="Proportion of observed reference alleles which are supported by properly paired read fragments">
##INFO=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
##INFO=<ID=END,Number=1,Type=Integer,Description="Last position (inclusive) in gVCF output record.">
##INFO=<ID=technology.ILLUMINA,Number=A,Type=Float,Description="Fraction of observations supporting the alternate observed in reads from ILLUMINA">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype">
##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood, log10-scaled likelihoods of the data given the called genotype for each possible genotype generated from the reference and alternate alleles given the sample ploidy">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Number of observation for each allele">
##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count">
##FORMAT=<ID=QR,Number=1,Type=Integer,Description="Sum of quality of the reference observations">
##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count">
##FORMAT=<ID=QA,Number=A,Type=Integer,Description="Sum of quality of the alternate observations">
##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	SRR1792272
NC_002945.4	1057	.	A	G	8671.65	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=288;CIGAR=1X;DP=289;DPB=289;DPRA=0;EPP=3.04046;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=403.858;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=9688;QR=0;RO=0;RPL=157;RPP=8.10723;RPPR=0;RPR=131;RUN=1;SAF=146;SAP=3.13094;SAR=142;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:289:0,288:0:0:288:9688:-871.673,-86.6966,0
NC_002945.4	4480	.	T	C	4873.39	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=163;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=3.1302;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=230.571;PAIRED=0.97546;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5469;QR=0;RO=0;RPL=94;RPP=11.3365;RPPR=0;RPR=69;RUN=1;SAF=72;SAP=7.81951;SAR=91;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:163:0,163:0:0:163:5469:-492.275,-49.0679,0
NC_002945.4	8741	.	T	C	6443.62	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=221;CIGAR=1X;DP=224;DPB=224;DPRA=0;EPP=24.7152;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=306.56;PAIRED=0.977376;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7233;QR=12;RO=1;RPL=118;RPP=5.22108;RPPR=5.18177;RPR=103;RUN=1;SAF=115;SAP=3.80618;SAR=106;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:224:1,221:1:12:221:7233:-649.748,-65.752,0
NC_002945.4	29061	.	C	T	6683.56	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=218;CIGAR=1X;DP=221;DPB=221;DPRA=0;EPP=8.74777;EPPR=7.35324;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=59.5;NS=1;NUMALT=1;ODDS=298.686;PAIRED=0.954128;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7482;QR=24;RO=2;RPL=103;RPP=4.44467;RPPR=7.35324;RPR=115;RUN=1;SAF=108;SAP=3.05014;SAR=110;SRF=0;SRP=7.35324;SRR=2;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:221:2,218:2:24:218:7482:-671.072,-64.0666,0
NC_002945.4	29471	.	N	.	.	.	.	GT	./.
NC_002945.4	29472	.	N	.	.	.	.	GT	./.
NC_002945.4	29473	.	N	.	.	.	.	GT	./.
NC_002945.4	29474	.	N	.	.	.	.	GT	./.
NC_002945.4	29475	.	N	.	.	.	.	GT	./.
NC_002945.4	29476	.	N	.	.	.	.	GT	./.
NC_002945.4	29477	.	N	.	.	.	.	GT	./.
NC_002945.4	29478	.	N	.	.	.	.	GT	./.
NC_002945.4	29479	.	N	.	.	.	.	GT	./.
NC_002945.4	29480	.	N	.	.	.	.	GT	./.
NC_002945.4	29481	.	N	.	.	.	.	GT	./.
NC_002945.4	29482	.	N	.	.	.	.	GT	./.
NC_002945.4	29483	.	N	.	.	.	.	GT	./.
NC_002945.4	29484	.	N	.	.	.	.	GT	./.
NC_002945.4	29485	.	N	.	.	.	.	GT	./.
NC_002945.4	29486	.	N	.	.	.	.	GT	./.
NC_002945.4	29487	.	N	.	.	.	.	GT	./.
NC_002945.4	29488	.	N	.	.	.	.	GT	./.
NC_002945.4	29489	.	N	.	.	.	.	GT	./.
NC_002945.4	29490	.	N	.	.	.	.	GT	./.
NC_002945.4	29491	.	N	.	.	.	.	GT	./.
NC_002945.4	29492	.	N	.	.	.	.	GT	./.
NC_002945.4	29493	.	N	.	.	.	.	GT	./.
NC_002945.4	29494	.	N	.	.	.	.	GT	./.
NC_002945.4	29495	.	N	.	.	.	.	GT	./.
NC_002945.4	29496	.	N	.	.	.	.	GT	./.
NC_002945.4	29497	.	N	.	.	.	.	GT	./.
NC_002945.4	29498	.	N	.	.	.	.	GT	./.
NC_002945.4	29499	.	N	.	.	.	.	GT	./.
NC_002945.4	29500	.	N	.	.	.	.	GT	./.
NC_002945.4	29501	.	N	.	.	.	.	GT	./.
NC_002945.4	29502	.	N	.	.	.	.	GT	./.
NC_002945.4	29503	.	N	.	.	.	.	GT	./.
NC_002945.4	29504	.	N	.	.	.	.	GT	./.
NC_002945.4	29505	.	N	.	.	.	.	GT	./.
NC_002945.4	29506	.	N	.	.	.	.	GT	./.
NC_002945.4	29507	.	N	.	.	.	.	GT	./.
NC_002945.4	29508	.	N	.	.	.	.	GT	./.
NC_002945.4	29509	.	N	.	.	.	.	GT	./.
NC_002945.4	29510	.	N	.	.	.	.	GT	./.
NC_002945.4	29511	.	N	.	.	.	.	GT	./.
NC_002945.4	29512	.	N	.	.	.	.	GT	./.
NC_002945.4	29513	.	N	.	.	.	.	GT	./.
NC_002945.4	29514	.	N	.	.	.	.	GT	./.
NC_002945.4	29515	.	N	.	.	.	.	GT	./.
NC_002945.4	29516	.	N	.	.	.	.	GT	./.
NC_002945.4	29517	.	N	.	.	.	.	GT	./.
NC_002945.4	29518	.	N	.	.	.	.	GT	./.
NC_002945.4	29519	.	N	.	.	.	.	GT	./.
NC_002945.4	29520	.	N	.	.	.	.	GT	./.
NC_002945.4	29521	.	N	.	.	.	.	GT	./.
NC_002945.4	29522	.	N	.	.	.	.	GT	./.
NC_002945.4	29523	.	N	.	.	.	.	GT	./.
NC_002945.4	29524	.	N	.	.	.	.	GT	./.
NC_002945.4	29525	.	N	.	.	.	.	GT	./.
NC_002945.4	29526	.	N	.	.	.	.	GT	./.
NC_002945.4	29527	.	N	.	.	.	.	GT	./.
NC_002945.4	29528	.	N	.	.	.	.	GT	./.
NC_002945.4	29529	.	N	.	.	.	.	GT	./.
NC_002945.4	29530	.	N	.	.	.	.	GT	./.
NC_002945.4	29531	.	N	.	.	.	.	GT	./.
NC_002945.4	29532	.	N	.	.	.	.	GT	./.
NC_002945.4	29533	.	N	.	.	.	.	GT	./.
NC_002945.4	29534	.	N	.	.	.	.	GT	./.
NC_002945.4	29535	.	N	.	.	.	.	GT	./.
NC_002945.4	29536	.	N	.	.	.	.	GT	./.
NC_002945.4	29537	.	N	.	.	.	.	GT	./.
NC_002945.4	29538	.	N	.	.	.	.	GT	./.
NC_002945.4	29539	.	N	.	.	.	.	GT	./.
NC_002945.4	29540	.	N	.	.	.	.	GT	./.
NC_002945.4	29541	.	N	.	.	.	.	GT	./.
NC_002945.4	29542	.	N	.	.	.	.	GT	./.
NC_002945.4	29543	.	N	.	.	.	.	GT	./.
NC_002945.4	29544	.	N	.	.	.	.	GT	./.
NC_002945.4	29545	.	N	.	.	.	.	GT	./.
NC_002945.4	29546	.	N	.	.	.	.	GT	./.
NC_002945.4	29547	.	N	.	.	.	.	GT	./.
NC_002945.4	29548	.	N	.	.	.	.	GT	./.
NC_002945.4	29549	.	N	.	.	.	.	GT	./.
NC_002945.4	29550	.	N	.	.	.	.	GT	./.
NC_002945.4	29551	.	N	.	.	.	.	GT	./.
NC_002945.4	29552	.	N	.	.	.	.	GT	./.
NC_002945.4	29553	.	N	.	.	.	.	GT	./.
NC_002945.4	29554	.	N	.	.	.	.	GT	./.
NC_002945.4	29555	.	N	.	.	.	.	GT	./.
NC_002945.4	29556	.	N	.	.	.	.	GT	./.
NC_002945.4	29557	.	N	.	.	.	.	GT	./.
NC_002945.4	29558	.	N	.	.	.	.	GT	./.
NC_002945.4	29559	.	N	.	.	.	.	GT	./.
NC_002945.4	29560	.	N	.	.	.	.	GT	./.
NC_002945.4	29561	.	N	.	.	.	.	GT	./.
NC_002945.4	29562	.	N	.	.	.	.	GT	./.
NC_002945.4	29563	.	N	.	.	.	.	GT	./.
NC_002945.4	29564	.	N	.	.	.	.	GT	./.
NC_002945.4	29565	.	N	.	.	.	.	GT	./.
NC_002945.4	29566	.	N	.	.	.	.	GT	./.
NC_002945.4	29567	.	N	.	.	.	.	GT	./.
NC_002945.4	29568	.	N	.	.	.	.	GT	./.
NC_002945.4	29569	.	N	.	.	.	.	GT	./.
NC_002945.4	29570	.	N	.	.	.	.	GT	./.
NC_002945.4	29571	.	N	.	.	.	.	GT	./.
NC_002945.4	29572	.	N	.	.	.	.	GT	./.
NC_002945.4	29573	.	N	.	.	.	.	GT	./.
NC_002945.4	29574	.	N	.	.	.	.	GT	./.
NC_002945.4	29575	.	N	.	.	.	.	GT	./.
NC_002945.4	29576	.	N	.	.	.	.	GT	./.
NC_002945.4	29577	.	N	.	.	.	.	GT	./.
NC_002945.4	29578	.	N	.	.	.	.	GT	./.
NC_002945.4	29579	.	N	.	.	.	.	GT	./.
NC_002945.4	29580	.	N	.	.	.	.	GT	./.
NC_002945.4	29581	.	N	.	.	.	.	GT	./.
NC_002945.4	29582	.	N	.	.	.	.	GT	./.
NC_002945.4	29583	.	N	.	.	.	.	GT	./.
NC_002945.4	29584	.	N	.	.	.	.	GT	./.
NC_002945.4	29585	.	N	.	.	.	.	GT	./.
NC_002945.4	29586	.	N	.	.	.	.	GT	./.
NC_002945.4	29587	.	N	.	.	.	.	GT	./.
NC_002945.4	29588	.	N	.	.	.	.	GT	./.
NC_002945.4	29589	.	N	.	.	.	.	GT	./.
NC_002945.4	29590	.	N	.	.	.	.	GT	./.
NC_002945.4	29591	.	N	.	.	.	.	GT	./.
NC_002945.4	29592	.	N	.	.	.	.	GT	./.
NC_002945.4	29593	.	N	.	.	.	.	GT	./.
NC_002945.4	29594	.	N	.	.	.	.	GT	./.
NC_002945.4	29595	.	N	.	.	.	.	GT	./.
NC_002945.4	29596	.	N	.	.	.	.	GT	./.
NC_002945.4	29597	.	N	.	.	.	.	GT	./.
NC_002945.4	29598	.	N	.	.	.	.	GT	./.
NC_002945.4	29599	.	N	.	.	.	.	GT	./.
NC_002945.4	29600	.	N	.	.	.	.	GT	./.
NC_002945.4	29601	.	N	.	.	.	.	GT	./.
NC_002945.4	29602	.	N	.	.	.	.	GT	./.
NC_002945.4	29603	.	N	.	.	.	.	GT	./.
NC_002945.4	29604	.	N	.	.	.	.	GT	./.
NC_002945.4	29605	.	N	.	.	.	.	GT	./.
NC_002945.4	29606	.	N	.	.	.	.	GT	./.
NC_002945.4	29607	.	N	.	.	.	.	GT	./.
NC_002945.4	29608	.	N	.	.	.	.	GT	./.
NC_002945.4	29609	.	N	.	.	.	.	GT	./.
NC_002945.4	29610	.	N	.	.	.	.	GT	./.
NC_002945.4	29611	.	N	.	.	.	.	GT	./.
NC_002945.4	29612	.	N	.	.	.	.	GT	./.
NC_002945.4	29613	.	N	.	.	.	.	GT	./.
NC_002945.4	29614	.	N	.	.	.	.	GT	./.
NC_002945.4	29615	.	N	.	.	.	.	GT	./.
NC_002945.4	29616	.	N	.	.	.	.	GT	./.
NC_002945.4	29617	.	N	.	.	.	.	GT	./.
NC_002945.4	29618	.	N	.	.	.	.	GT	./.
NC_002945.4	29619	.	N	.	.	.	.	GT	./.
NC_002945.4	29620	.	N	.	.	.	.	GT	./.
NC_002945.4	29621	.	N	.	.	.	.	GT	./.
NC_002945.4	29622	.	N	.	.	.	.	GT	./.
NC_002945.4	29623	.	N	.	.	.	.	GT	./.
NC_002945.4	29624	.	N	.	.	.	.	GT	./.
NC_002945.4	29625	.	N	.	.	.	.	GT	./.
NC_002945.4	29626	.	N	.	.	.	.	GT	./.
NC_002945.4	29627	.	N	.	.	.	.	GT	./.
NC_002945.4	29628	.	N	.	.	.	.	GT	./.
NC_002945.4	29629	.	N	.	.	.	.	GT	./.
NC_002945.4	29630	.	N	.	.	.	.	GT	./.
NC_002945.4	29631	.	N	.	.	.	.	GT	./.
NC_002945.4	29632	.	N	.	.	.	.	GT	./.
NC_002945.4	29633	.	N	.	.	.	.	GT	./.
NC_002945.4	29634	.	N	.	.	.	.	GT	./.
NC_002945.4	29635	.	N	.	.	.	.	GT	./.
NC_002945.4	29636	.	N	.	.	.	.	GT	./.
NC_002945.4	29637	.	N	.	.	.	.	GT	./.
NC_002945.4	29638	.	N	.	.	.	.	GT	./.
NC_002945.4	29639	.	N	.	.	.	.	GT	./.
NC_002945.4	29640	.	N	.	.	.	.	GT	./.
NC_002945.4	29641	.	N	.	.	.	.	GT	./.
NC_002945.4	29642	.	N	.	.	.	.	GT	./.
NC_002945.4	29643	.	N	.	.	.	.	GT	./.
NC_002945.4	29644	.	N	.	.	.	.	GT	./.
NC_002945.4	29645	.	N	.	.	.	.	GT	./.
NC_002945.4	29646	.	N	.	.	.	.	GT	./.
NC_002945.4	29647	.	N	.	.	.	.	GT	./.
NC_002945.4	29648	.	N	.	.	.	.	GT	./.
NC_002945.4	29649	.	N	.	.	.	.	GT	./.
NC_002945.4	29650	.	N	.	.	.	.	GT	./.
NC_002945.4	29651	.	N	.	.	.	.	GT	./.
NC_002945.4	29652	.	N	.	.	.	.	GT	./.
NC_002945.4	29653	.	N	.	.	.	.	GT	./.
NC_002945.4	29654	.	N	.	.	.	.	GT	./.
NC_002945.4	29655	.	N	.	.	.	.	GT	./.
NC_002945.4	29656	.	N	.	.	.	.	GT	./.
NC_002945.4	29657	.	N	.	.	.	.	GT	./.
NC_002945.4	29658	.	N	.	.	.	.	GT	./.
NC_002945.4	29659	.	N	.	.	.	.	GT	./.
NC_002945.4	29660	.	N	.	.	.	.	GT	./.
NC_002945.4	29661	.	N	.	.	.	.	GT	./.
NC_002945.4	29662	.	N	.	.	.	.	GT	./.
NC_002945.4	29663	.	N	.	.	.	.	GT	./.
NC_002945.4	29664	.	N	.	.	.	.	GT	./.
NC_002945.4	29665	.	N	.	.	.	.	GT	./.
NC_002945.4	29666	.	N	.	.	.	.	GT	./.
NC_002945.4	29667	.	N	.	.	.	.	GT	./.
NC_002945.4	29668	.	N	.	.	.	.	GT	./.
NC_002945.4	29669	.	N	.	.	.	.	GT	./.
NC_002945.4	29670	.	N	.	.	.	.	GT	./.
NC_002945.4	29671	.	N	.	.	.	.	GT	./.
NC_002945.4	29672	.	N	.	.	.	.	GT	./.
NC_002945.4	29673	.	N	.	.	.	.	GT	./.
NC_002945.4	29674	.	N	.	.	.	.	GT	./.
NC_002945.4	29675	.	N	.	.	.	.	GT	./.
NC_002945.4	29676	.	N	.	.	.	.	GT	./.
NC_002945.4	29677	.	N	.	.	.	.	GT	./.
NC_002945.4	29678	.	N	.	.	.	.	GT	./.
NC_002945.4	29679	.	N	.	.	.	.	GT	./.
NC_002945.4	29680	.	N	.	.	.	.	GT	./.
NC_002945.4	29681	.	N	.	.	.	.	GT	./.
NC_002945.4	29682	.	N	.	.	.	.	GT	./.
NC_002945.4	29683	.	N	.	.	.	.	GT	./.
NC_002945.4	29684	.	N	.	.	.	.	GT	./.
NC_002945.4	29685	.	N	.	.	.	.	GT	./.
NC_002945.4	29686	.	N	.	.	.	.	GT	./.
NC_002945.4	29687	.	N	.	.	.	.	GT	./.
NC_002945.4	29688	.	N	.	.	.	.	GT	./.
NC_002945.4	29689	.	N	.	.	.	.	GT	./.
NC_002945.4	29690	.	N	.	.	.	.	GT	./.
NC_002945.4	29691	.	N	.	.	.	.	GT	./.
NC_002945.4	29692	.	N	.	.	.	.	GT	./.
NC_002945.4	29693	.	N	.	.	.	.	GT	./.
NC_002945.4	29694	.	N	.	.	.	.	GT	./.
NC_002945.4	29695	.	N	.	.	.	.	GT	./.
NC_002945.4	29696	.	N	.	.	.	.	GT	./.
NC_002945.4	29697	.	N	.	.	.	.	GT	./.
NC_002945.4	29698	.	N	.	.	.	.	GT	./.
NC_002945.4	29699	.	N	.	.	.	.	GT	./.
NC_002945.4	29700	.	N	.	.	.	.	GT	./.
NC_002945.4	29701	.	N	.	.	.	.	GT	./.
NC_002945.4	29702	.	N	.	.	.	.	GT	./.
NC_002945.4	29703	.	N	.	.	.	.	GT	./.
NC_002945.4	29704	.	N	.	.	.	.	GT	./.
NC_002945.4	29705	.	N	.	.	.	.	GT	./.
NC_002945.4	29706	.	N	.	.	.	.	GT	./.
NC_002945.4	29707	.	N	.	.	.	.	GT	./.
NC_002945.4	29708	.	N	.	.	.	.	GT	./.
NC_002945.4	29709	.	N	.	.	.	.	GT	./.
NC_002945.4	29710	.	N	.	.	.	.	GT	./.
NC_002945.4	29711	.	N	.	.	.	.	GT	./.
NC_002945.4	29712	.	N	.	.	.	.	GT	./.
NC_002945.4	29713	.	N	.	.	.	.	GT	./.
NC_002945.4	29714	.	N	.	.	.	.	GT	./.
NC_002945.4	29715	.	N	.	.	.	.	GT	./.
NC_002945.4	29716	.	N	.	.	.	.	GT	./.
NC_002945.4	29717	.	N	.	.	.	.	GT	./.
NC_002945.4	29718	.	N	.	.	.	.	GT	./.
NC_002945.4	29719	.	N	.	.	.	.	GT	./.
NC_002945.4	29720	.	N	.	.	.	.	GT	./.
NC_002945.4	29721	.	N	.	.	.	.	GT	./.
NC_002945.4	29722	.	N	.	.	.	.	GT	./.
NC_002945.4	29723	.	N	.	.	.	.	GT	./.
NC_002945.4	29724	.	N	.	.	.	.	GT	./.
NC_002945.4	29725	.	N	.	.	.	.	GT	./.
NC_002945.4	29726	.	N	.	.	.	.	GT	./.
NC_002945.4	29727	.	N	.	.	.	.	GT	./.
NC_002945.4	29728	.	N	.	.	.	.	GT	./.
NC_002945.4	29729	.	N	.	.	.	.	GT	./.
NC_002945.4	29730	.	N	.	.	.	.	GT	./.
NC_002945.4	29731	.	N	.	.	.	.	GT	./.
NC_002945.4	29732	.	N	.	.	.	.	GT	./.
NC_002945.4	29733	.	N	.	.	.	.	GT	./.
NC_002945.4	29734	.	N	.	.	.	.	GT	./.
NC_002945.4	29735	.	N	.	.	.	.	GT	./.
NC_002945.4	29736	.	N	.	.	.	.	GT	./.
NC_002945.4	29737	.	N	.	.	.	.	GT	./.
NC_002945.4	29738	.	N	.	.	.	.	GT	./.
NC_002945.4	29739	.	N	.	.	.	.	GT	./.
NC_002945.4	29740	.	N	.	.	.	.	GT	./.
NC_002945.4	29741	.	N	.	.	.	.	GT	./.
NC_002945.4	29742	.	N	.	.	.	.	GT	./.
NC_002945.4	29743	.	N	.	.	.	.	GT	./.
NC_002945.4	29744	.	N	.	.	.	.	GT	./.
NC_002945.4	29745	.	N	.	.	.	.	GT	./.
NC_002945.4	29746	.	N	.	.	.	.	GT	./.
NC_002945.4	29747	.	N	.	.	.	.	GT	./.
NC_002945.4	29748	.	N	.	.	.	.	GT	./.
NC_002945.4	29749	.	N	.	.	.	.	GT	./.
NC_002945.4	29750	.	N	.	.	.	.	GT	./.
NC_002945.4	29751	.	N	.	.	.	.	GT	./.
NC_002945.4	29752	.	N	.	.	.	.	GT	./.
NC_002945.4	29753	.	N	.	.	.	.	GT	./.
NC_002945.4	29754	.	N	.	.	.	.	GT	./.
NC_002945.4	29755	.	N	.	.	.	.	GT	./.
NC_002945.4	29756	.	N	.	.	.	.	GT	./.
NC_002945.4	29757	.	N	.	.	.	.	GT	./.
NC_002945.4	29758	.	N	.	.	.	.	GT	./.
NC_002945.4	29759	.	N	.	.	.	.	GT	./.
NC_002945.4	29760	.	N	.	.	.	.	GT	./.
NC_002945.4	29761	.	N	.	.	.	.	GT	./.
NC_002945.4	29762	.	N	.	.	.	.	GT	./.
NC_002945.4	29763	.	N	.	.	.	.	GT	./.
NC_002945.4	29764	.	N	.	.	.	.	GT	./.
NC_002945.4	29765	.	N	.	.	.	.	GT	./.
NC_002945.4	29766	.	N	.	.	.	.	GT	./.
NC_002945.4	29767	.	N	.	.	.	.	GT	./.
NC_002945.4	29768	.	N	.	.	.	.	GT	./.
NC_002945.4	29769	.	N	.	.	.	.	GT	./.
NC_002945.4	29770	.	N	.	.	.	.	GT	./.
NC_002945.4	29771	.	N	.	.	.	.	GT	./.
NC_002945.4	29772	.	N	.	.	.	.	GT	./.
NC_002945.4	29773	.	N	.	.	.	.	GT	./.
NC_002945.4	29774	.	N	.	.	.	.	GT	./.
NC_002945.4	29775	.	N	.	.	.	.	GT	./.
NC_002945.4	29776	.	N	.	.	.	.	GT	./.
NC_002945.4	29777	.	N	.	.	.	.	GT	./.
NC_002945.4	29778	.	N	.	.	.	.	GT	./.
NC_002945.4	29779	.	N	.	.	.	.	GT	./.
NC_002945.4	29780	.	N	.	.	.	.	GT	./.
NC_002945.4	29781	.	N	.	.	.	.	GT	./.
NC_002945.4	29782	.	N	.	.	.	.	GT	./.
NC_002945.4	29783	.	N	.	.	.	.	GT	./.
NC_002945.4	29784	.	N	.	.	.	.	GT	./.
NC_002945.4	29785	.	N	.	.	.	.	GT	./.
NC_002945.4	29786	.	N	.	.	.	.	GT	./.
NC_002945.4	29787	.	N	.	.	.	.	GT	./.
NC_002945.4	29788	.	N	.	.	.	.	GT	./.
NC_002945.4	29789	.	N	.	.	.	.	GT	./.
NC_002945.4	29790	.	N	.	.	.	.	GT	./.
NC_002945.4	29791	.	N	.	.	.	.	GT	./.
NC_002945.4	29792	.	N	.	.	.	.	GT	./.
NC_002945.4	29793	.	N	.	.	.	.	GT	./.
NC_002945.4	29794	.	N	.	.	.	.	GT	./.
NC_002945.4	29795	.	N	.	.	.	.	GT	./.
NC_002945.4	29796	.	N	.	.	.	.	GT	./.
NC_002945.4	29797	.	N	.	.	.	.	GT	./.
NC_002945.4	29798	.	N	.	.	.	.	GT	./.
NC_002945.4	29799	.	N	.	.	.	.	GT	./.
NC_002945.4	29800	.	N	.	.	.	.	GT	./.
NC_002945.4	29801	.	N	.	.	.	.	GT	./.
NC_002945.4	29802	.	N	.	.	.	.	GT	./.
NC_002945.4	29803	.	N	.	.	.	.	GT	./.
NC_002945.4	29804	.	N	.	.	.	.	GT	./.
NC_002945.4	29805	.	N	.	.	.	.	GT	./.
NC_002945.4	29806	.	N	.	.	.	.	GT	./.
NC_002945.4	29807	.	N	.	.	.	.	GT	./.
NC_002945.4	29808	.	N	.	.	.	.	GT	./.
NC_002945.4	29809	.	N	.	.	.	.	GT	./.
NC_002945.4	29810	.	N	.	.	.	.	GT	./.
NC_002945.4	29811	.	N	.	.	.	.	GT	./.
NC_002945.4	29812	.	N	.	.	.	.	GT	./.
NC_002945.4	29813	.	N	.	.	.	.	GT	./.
NC_002945.4	29814	.	N	.	.	.	.	GT	./.
NC_002945.4	29815	.	N	.	.	.	.	GT	./.
NC_002945.4	29816	.	N	.	.	.	.	GT	./.
NC_002945.4	29817	.	N	.	.	.	.	GT	./.
NC_002945.4	29818	.	N	.	.	.	.	GT	./.
NC_002945.4	29819	.	N	.	.	.	.	GT	./.
NC_002945.4	29820	.	N	.	.	.	.	GT	./.
NC_002945.4	29821	.	N	.	.	.	.	GT	./.
NC_002945.4	29822	.	N	.	.	.	.	GT	./.
NC_002945.4	29823	.	N	.	.	.	.	GT	./.
NC_002945.4	29824	.	N	.	.	.	.	GT	./.
NC_002945.4	29825	.	N	.	.	.	.	GT	./.
NC_002945.4	29826	.	N	.	.	.	.	GT	./.
NC_002945.4	29827	.	N	.	.	.	.	GT	./.
NC_002945.4	29828	.	N	.	.	.	.	GT	./.
NC_002945.4	29829	.	N	.	.	.	.	GT	./.
NC_002945.4	29830	.	N	.	.	.	.	GT	./.
NC_002945.4	29831	.	N	.	.	.	.	GT	./.
NC_002945.4	29832	.	N	.	.	.	.	GT	./.
NC_002945.4	29833	.	N	.	.	.	.	GT	./.
NC_002945.4	29834	.	N	.	.	.	.	GT	./.
NC_002945.4	29835	.	N	.	.	.	.	GT	./.
NC_002945.4	29836	.	N	.	.	.	.	GT	./.
NC_002945.4	29837	.	N	.	.	.	.	GT	./.
NC_002945.4	29838	.	N	.	.	.	.	GT	./.
NC_002945.4	29839	.	N	.	.	.	.	GT	./.
NC_002945.4	29840	.	N	.	.	.	.	GT	./.
NC_002945.4	29841	.	N	.	.	.	.	GT	./.
NC_002945.4	29842	.	N	.	.	.	.	GT	./.
NC_002945.4	29843	.	N	.	.	.	.	GT	./.
NC_002945.4	29844	.	N	.	.	.	.	GT	./.
NC_002945.4	29845	.	N	.	.	.	.	GT	./.
NC_002945.4	29846	.	N	.	.	.	.	GT	./.
NC_002945.4	29847	.	N	.	.	.	.	GT	./.
NC_002945.4	29848	.	N	.	.	.	.	GT	./.
NC_002945.4	29849	.	N	.	.	.	.	GT	./.
NC_002945.4	29850	.	N	.	.	.	.	GT	./.
NC_002945.4	29851	.	N	.	.	.	.	GT	./.
NC_002945.4	29852	.	N	.	.	.	.	GT	./.
NC_002945.4	29853	.	N	.	.	.	.	GT	./.
NC_002945.4	29854	.	N	.	.	.	.	GT	./.
NC_002945.4	29855	.	N	.	.	.	.	GT	./.
NC_002945.4	29856	.	N	.	.	.	.	GT	./.
NC_002945.4	29857	.	N	.	.	.	.	GT	./.
NC_002945.4	29858	.	N	.	.	.	.	GT	./.
NC_002945.4	29859	.	N	.	.	.	.	GT	./.
NC_002945.4	29860	.	N	.	.	.	.	GT	./.
NC_002945.4	29861	.	N	.	.	.	.	GT	./.
NC_002945.4	29862	.	N	.	.	.	.	GT	./.
NC_002945.4	29863	.	N	.	.	.	.	GT	./.
NC_002945.4	29864	.	N	.	.	.	.	GT	./.
NC_002945.4	29865	.	N	.	.	.	.	GT	./.
NC_002945.4	29866	.	N	.	.	.	.	GT	./.
NC_002945.4	29867	.	N	.	.	.	.	GT	./.
NC_002945.4	29868	.	N	.	.	.	.	GT	./.
NC_002945.4	29869	.	N	.	.	.	.	GT	./.
NC_002945.4	29870	.	N	.	.	.	.	GT	./.
NC_002945.4	29871	.	N	.	.	.	.	GT	./.
NC_002945.4	29872	.	N	.	.	.	.	GT	./.
NC_002945.4	29873	.	N	.	.	.	.	GT	./.
NC_002945.4	29874	.	N	.	.	.	.	GT	./.
NC_002945.4	29875	.	N	.	.	.	.	GT	./.
NC_002945.4	29876	.	N	.	.	.	.	GT	./.
NC_002945.4	29877	.	N	.	.	.	.	GT	./.
NC_002945.4	29878	.	N	.	.	.	.	GT	./.
NC_002945.4	29879	.	N	.	.	.	.	GT	./.
NC_002945.4	29880	.	N	.	.	.	.	GT	./.
NC_002945.4	29881	.	N	.	.	.	.	GT	./.
NC_002945.4	29882	.	N	.	.	.	.	GT	./.
NC_002945.4	29883	.	N	.	.	.	.	GT	./.
NC_002945.4	29884	.	N	.	.	.	.	GT	./.
NC_002945.4	29885	.	N	.	.	.	.	GT	./.
NC_002945.4	29886	.	N	.	.	.	.	GT	./.
NC_002945.4	29887	.	N	.	.	.	.	GT	./.
NC_002945.4	29888	.	N	.	.	.	.	GT	./.
NC_002945.4	29889	.	N	.	.	.	.	GT	./.
NC_002945.4	29890	.	N	.	.	.	.	GT	./.
NC_002945.4	29891	.	N	.	.	.	.	GT	./.
NC_002945.4	29892	.	N	.	.	.	.	GT	./.
NC_002945.4	29893	.	N	.	.	.	.	GT	./.
NC_002945.4	29894	.	N	.	.	.	.	GT	./.
NC_002945.4	29895	.	N	.	.	.	.	GT	./.
NC_002945.4	29896	.	N	.	.	.	.	GT	./.
NC_002945.4	29897	.	N	.	.	.	.	GT	./.
NC_002945.4	29898	.	N	.	.	.	.	GT	./.
NC_002945.4	29899	.	N	.	.	.	.	GT	./.
NC_002945.4	29900	.	N	.	.	.	.	GT	./.
NC_002945.4	29901	.	N	.	.	.	.	GT	./.
NC_002945.4	29902	.	N	.	.	.	.	GT	./.
NC_002945.4	29903	.	N	.	.	.	.	GT	./.
NC_002945.4	29904	.	N	.	.	.	.	GT	./.
NC_002945.4	29905	.	N	.	.	.	.	GT	./.
NC_002945.4	29906	.	N	.	.	.	.	GT	./.
NC_002945.4	29907	.	N	.	.	.	.	GT	./.
NC_002945.4	29908	.	N	.	.	.	.	GT	./.
NC_002945.4	29909	.	N	.	.	.	.	GT	./.
NC_002945.4	29910	.	N	.	.	.	.	GT	./.
NC_002945.4	29911	.	N	.	.	.	.	GT	./.
NC_002945.4	29912	.	N	.	.	.	.	GT	./.
NC_002945.4	29913	.	N	.	.	.	.	GT	./.
NC_002945.4	29914	.	N	.	.	.	.	GT	./.
NC_002945.4	29915	.	N	.	.	.	.	GT	./.
NC_002945.4	29916	.	N	.	.	.	.	GT	./.
NC_002945.4	29917	.	N	.	.	.	.	GT	./.
NC_002945.4	29918	.	N	.	.	.	.	GT	./.
NC_002945.4	29919	.	N	.	.	.	.	GT	./.
NC_002945.4	29920	.	N	.	.	.	.	GT	./.
NC_002945.4	29921	.	N	.	.	.	.	GT	./.
NC_002945.4	29922	.	N	.	.	.	.	GT	./.
NC_002945.4	29923	.	N	.	.	.	.	GT	./.
NC_002945.4	29924	.	N	.	.	.	.	GT	./.
NC_002945.4	29925	.	N	.	.	.	.	GT	./.
NC_002945.4	29926	.	N	.	.	.	.	GT	./.
NC_002945.4	29927	.	N	.	.	.	.	GT	./.
NC_002945.4	29928	.	N	.	.	.	.	GT	./.
NC_002945.4	29929	.	N	.	.	.	.	GT	./.
NC_002945.4	29930	.	N	.	.	.	.	GT	./.
NC_002945.4	29931	.	N	.	.	.	.	GT	./.
NC_002945.4	29932	.	N	.	.	.	.	GT	./.
NC_002945.4	29933	.	N	.	.	.	.	GT	./.
NC_002945.4	29934	.	N	.	.	.	.	GT	./.
NC_002945.4	29935	.	N	.	.	.	.	GT	./.
NC_002945.4	29936	.	N	.	.	.	.	GT	./.
NC_002945.4	29937	.	N	.	.	.	.	GT	./.
NC_002945.4	29938	.	N	.	.	.	.	GT	./.
NC_002945.4	29939	.	N	.	.	.	.	GT	./.
NC_002945.4	29940	.	N	.	.	.	.	GT	./.
NC_002945.4	29941	.	N	.	.	.	.	GT	./.
NC_002945.4	29942	.	N	.	.	.	.	GT	./.
NC_002945.4	29943	.	N	.	.	.	.	GT	./.
NC_002945.4	29944	.	N	.	.	.	.	GT	./.
NC_002945.4	29945	.	N	.	.	.	.	GT	./.
NC_002945.4	29946	.	N	.	.	.	.	GT	./.
NC_002945.4	29947	.	N	.	.	.	.	GT	./.
NC_002945.4	29948	.	N	.	.	.	.	GT	./.
NC_002945.4	29949	.	N	.	.	.	.	GT	./.
NC_002945.4	29950	.	N	.	.	.	.	GT	./.
NC_002945.4	29951	.	N	.	.	.	.	GT	./.
NC_002945.4	29952	.	N	.	.	.	.	GT	./.
NC_002945.4	29953	.	N	.	.	.	.	GT	./.
NC_002945.4	29954	.	N	.	.	.	.	GT	./.
NC_002945.4	29955	.	N	.	.	.	.	GT	./.
NC_002945.4	29956	.	N	.	.	.	.	GT	./.
NC_002945.4	29957	.	N	.	.	.	.	GT	./.
NC_002945.4	29958	.	N	.	.	.	.	GT	./.
NC_002945.4	29959	.	N	.	.	.	.	GT	./.
NC_002945.4	29960	.	N	.	.	.	.	GT	./.
NC_002945.4	29961	.	N	.	.	.	.	GT	./.
NC_002945.4	29962	.	N	.	.	.	.	GT	./.
NC_002945.4	29963	.	N	.	.	.	.	GT	./.
NC_002945.4	29964	.	N	.	.	.	.	GT	./.
NC_002945.4	29965	.	N	.	.	.	.	GT	./.
NC_002945.4	29966	.	N	.	.	.	.	GT	./.
NC_002945.4	29967	.	N	.	.	.	.	GT	./.
NC_002945.4	29968	.	N	.	.	.	.	GT	./.
NC_002945.4	29969	.	N	.	.	.	.	GT	./.
NC_002945.4	29970	.	N	.	.	.	.	GT	./.
NC_002945.4	29971	.	N	.	.	.	.	GT	./.
NC_002945.4	29972	.	N	.	.	.	.	GT	./.
NC_002945.4	29973	.	N	.	.	.	.	GT	./.
NC_002945.4	29974	.	N	.	.	.	.	GT	./.
NC_002945.4	29975	.	N	.	.	.	.	GT	./.
NC_002945.4	29976	.	N	.	.	.	.	GT	./.
NC_002945.4	29977	.	N	.	.	.	.	GT	./.
NC_002945.4	29978	.	N	.	.	.	.	GT	./.
NC_002945.4	29979	.	N	.	.	.	.	GT	./.
NC_002945.4	29980	.	N	.	.	.	.	GT	./.
NC_002945.4	29981	.	N	.	.	.	.	GT	./.
NC_002945.4	29982	.	N	.	.	.	.	GT	./.
NC_002945.4	29983	.	N	.	.	.	.	GT	./.
NC_002945.4	29984	.	N	.	.	.	.	GT	./.
NC_002945.4	29985	.	N	.	.	.	.	GT	./.
NC_002945.4	29986	.	N	.	.	.	.	GT	./.
NC_002945.4	29987	.	N	.	.	.	.	GT	./.
NC_002945.4	29988	.	N	.	.	.	.	GT	./.
NC_002945.4	29989	.	N	.	.	.	.	GT	./.
NC_002945.4	29990	.	N	.	.	.	.	GT	./.
NC_002945.4	29991	.	N	.	.	.	.	GT	./.
NC_002945.4	29992	.	N	.	.	.	.	GT	./.
NC_002945.4	29993	.	N	.	.	.	.	GT	./.
NC_002945.4	29994	.	N	.	.	.	.	GT	./.
NC_002945.4	29995	.	N	.	.	.	.	GT	./.
NC_002945.4	29996	.	N	.	.	.	.	GT	./.
NC_002945.4	29997	.	N	.	.	.	.	GT	./.
NC_002945.4	29998	.	N	.	.	.	.	GT	./.
NC_002945.4	29999	.	N	.	.	.	.	GT	./.
NC_002945.4	30000	.	N	.	.	.	.	GT	./.
NC_002945.4	30001	.	N	.	.	.	.	GT	./.
NC_002945.4	30002	.	N	.	.	.	.	GT	./.
NC_002945.4	30003	.	N	.	.	.	.	GT	./.
NC_002945.4	30004	.	N	.	.	.	.	GT	./.
NC_002945.4	30005	.	N	.	.	.	.	GT	./.
NC_002945.4	30006	.	N	.	.	.	.	GT	./.
NC_002945.4	30007	.	N	.	.	.	.	GT	./.
NC_002945.4	30008	.	N	.	.	.	.	GT	./.
NC_002945.4	30009	.	N	.	.	.	.	GT	./.
NC_002945.4	30010	.	N	.	.	.	.	GT	./.
NC_002945.4	30011	.	N	.	.	.	.	GT	./.
NC_002945.4	30012	.	N	.	.	.	.	GT	./.
NC_002945.4	30013	.	N	.	.	.	.	GT	./.
NC_002945.4	30014	.	N	.	.	.	.	GT	./.
NC_002945.4	30015	.	N	.	.	.	.	GT	./.
NC_002945.4	30016	.	N	.	.	.	.	GT	./.
NC_002945.4	30017	.	N	.	.	.	.	GT	./.
NC_002945.4	30018	.	N	.	.	.	.	GT	./.
NC_002945.4	30019	.	N	.	.	.	.	GT	./.
NC_002945.4	30020	.	N	.	.	.	.	GT	./.
NC_002945.4	30021	.	N	.	.	.	.	GT	./.
NC_002945.4	30022	.	N	.	.	.	.	GT	./.
NC_002945.4	30023	.	N	.	.	.	.	GT	./.
NC_002945.4	30024	.	N	.	.	.	.	GT	./.
NC_002945.4	30025	.	N	.	.	.	.	GT	./.
NC_002945.4	30026	.	N	.	.	.	.	GT	./.
NC_002945.4	30027	.	N	.	.	.	.	GT	./.
NC_002945.4	30028	.	N	.	.	.	.	GT	./.
NC_002945.4	30029	.	N	.	.	.	.	GT	./.
NC_002945.4	30030	.	N	.	.	.	.	GT	./.
NC_002945.4	30031	.	N	.	.	.	.	GT	./.
NC_002945.4	30032	.	N	.	.	.	.	GT	./.
NC_002945.4	30033	.	N	.	.	.	.	GT	./.
NC_002945.4	30034	.	N	.	.	.	.	GT	./.
NC_002945.4	30035	.	N	.	.	.	.	GT	./.
NC_002945.4	30036	.	N	.	.	.	.	GT	./.
NC_002945.4	30037	.	N	.	.	.	.	GT	./.
NC_002945.4	30038	.	N	.	.	.	.	GT	./.
NC_002945.4	30039	.	N	.	.	.	.	GT	./.
NC_002945.4	30040	.	N	.	.	.	.	GT	./.
NC_002945.4	30041	.	N	.	.	.	.	GT	./.
NC_002945.4	30042	.	N	.	.	.	.	GT	./.
NC_002945.4	30043	.	N	.	.	.	.	GT	./.
NC_002945.4	30044	.	N	.	.	.	.	GT	./.
NC_002945.4	30045	.	N	.	.	.	.	GT	./.
NC_002945.4	30046	.	N	.	.	.	.	GT	./.
NC_002945.4	30047	.	N	.	.	.	.	GT	./.
NC_002945.4	30048	.	N	.	.	.	.	GT	./.
NC_002945.4	30049	.	N	.	.	.	.	GT	./.
NC_002945.4	30050	.	N	.	.	.	.	GT	./.
NC_002945.4	30051	.	N	.	.	.	.	GT	./.
NC_002945.4	30052	.	N	.	.	.	.	GT	./.
NC_002945.4	30053	.	N	.	.	.	.	GT	./.
NC_002945.4	30054	.	N	.	.	.	.	GT	./.
NC_002945.4	30055	.	N	.	.	.	.	GT	./.
NC_002945.4	30056	.	N	.	.	.	.	GT	./.
NC_002945.4	30057	.	N	.	.	.	.	GT	./.
NC_002945.4	30058	.	N	.	.	.	.	GT	./.
NC_002945.4	30059	.	N	.	.	.	.	GT	./.
NC_002945.4	30060	.	N	.	.	.	.	GT	./.
NC_002945.4	30061	.	N	.	.	.	.	GT	./.
NC_002945.4	30062	.	N	.	.	.	.	GT	./.
NC_002945.4	30063	.	N	.	.	.	.	GT	./.
NC_002945.4	30064	.	N	.	.	.	.	GT	./.
NC_002945.4	30065	.	N	.	.	.	.	GT	./.
NC_002945.4	30066	.	N	.	.	.	.	GT	./.
NC_002945.4	30067	.	N	.	.	.	.	GT	./.
NC_002945.4	30068	.	N	.	.	.	.	GT	./.
NC_002945.4	30069	.	N	.	.	.	.	GT	./.
NC_002945.4	30070	.	N	.	.	.	.	GT	./.
NC_002945.4	30071	.	N	.	.	.	.	GT	./.
NC_002945.4	30072	.	N	.	.	.	.	GT	./.
NC_002945.4	30073	.	N	.	.	.	.	GT	./.
NC_002945.4	30074	.	N	.	.	.	.	GT	./.
NC_002945.4	30075	.	N	.	.	.	.	GT	./.
NC_002945.4	30076	.	N	.	.	.	.	GT	./.
NC_002945.4	30077	.	N	.	.	.	.	GT	./.
NC_002945.4	30078	.	N	.	.	.	.	GT	./.
NC_002945.4	30079	.	N	.	.	.	.	GT	./.
NC_002945.4	30080	.	N	.	.	.	.	GT	./.
NC_002945.4	30081	.	N	.	.	.	.	GT	./.
NC_002945.4	30082	.	N	.	.	.	.	GT	./.
NC_002945.4	33788	.	A	G	3844.38	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=137;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=5.68898;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=194.527;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4647;QR=0;RO=0;RPL=68;RPP=3.02615;RPPR=0;RPR=69;RUN=1;SAF=131;SAP=250.669;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:137:0,137:0:0:137:4647:-418.367,-41.2411,0
NC_002945.4	41228	.	A	C	8160.68	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=279;CIGAR=1X;DP=286;DPB=286;DPRA=0;EPP=12.5445;EPPR=3.32051;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=356.696;PAIRED=0.992832;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9191;QR=99;RO=7;RPL=131;RPP=5.2596;RPPR=3.32051;RPR=148;RUN=1;SAF=140;SAP=3.01808;SAR=139;SRF=0;SRP=18.2106;SRR=7;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:286:7,279:7:99:279:9191:-817.976,-77.0432,0
NC_002945.4	41437	.	T	C	7833.61	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=256;CIGAR=1X;DP=257;DPB=257;DPRA=0;EPP=3.85853;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=359.497;PAIRED=0.984375;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=8761;QR=0;RO=0;RPL=133;RPP=3.85853;RPPR=0;RPR=123;RUN=1;SAF=144;SAP=11.6962;SAR=112;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:257:0,256:0:0:256:8761:-788.305,-77.0637,0
NC_002945.4	50470	.	C	T	7146.42	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=228;CIGAR=1X;DP=231;DPB=231;DPRA=0;EPP=7.61992;EPPR=7.35324;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=306.378;PAIRED=0.929825;PAIREDR=0.5;PAO=0;PQA=0;PQR=0;PRO=0;QA=8027;QR=46;RO=2;RPL=119;RPP=3.9627;RPPR=3.0103;RPR=109;RUN=1;SAF=120;SAP=4.38176;SAR=108;SRF=1;SRP=3.0103;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:231:2,228:2:46:228:8027:-717.962,-65.0379,0
NC_002945.4	59861	.	A	G	6573.98	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=214;CIGAR=1X;DP=214;DPB=214;DPRA=0;EPP=22.655;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=301.272;PAIRED=0.995327;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7388;QR=0;RO=0;RPL=94;RPP=9.86972;RPPR=0;RPR=120;RUN=1;SAF=123;SAP=13.4009;SAR=91;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:214:0,214:0:0:214:7388:-664.881,-64.4204,0
NC_002945.4	69913	.	T	C	8403.66	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=273;CIGAR=1X;DP=274;DPB=274;DPRA=0;EPP=8.80885;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=383.064;PAIRED=0.989011;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=9418;QR=0;RO=0;RPL=161;RPP=22.1081;RPPR=0;RPR=112;RUN=1;SAF=123;SAP=8.80885;SAR=150;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:274:0,273:0:0:273:9418:-847.386,-82.1812,0
NC_002945.4	70082	.	G	A	8301.4	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=273;CIGAR=1X;DP=277;DPB=277;DPRA=0;EPP=7.98162;EPPR=5.18177;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=378.441;PAIRED=0.981685;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9287;QR=12;RO=1;RPL=152;RPP=10.6542;RPPR=5.18177;RPR=121;RUN=1;SAF=133;SAP=3.40005;SAR=140;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:277:1,273:1:12:273:9287:-834.484,-81.4072,0
NC_002945.4	70438	.	A	G	6493.98	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=210;CIGAR=1X;DP=213;DPB=213;DPRA=0;EPP=4.49931;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=295.727;PAIRED=0.995238;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7262;QR=0;RO=0;RPL=108;RPP=3.38255;RPPR=0;RPR=102;RUN=1;SAF=103;SAP=3.17575;SAR=107;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:213:0,210:0:0:210:7262:-653.379,-63.2163,0
NC_002945.4	79918	.	G	A	5996.34	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=194;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=5.87575;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=269.298;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6717;QR=12;RO=1;RPL=88;RPP=6.63688;RPPR=5.18177;RPR=106;RUN=1;SAF=103;SAP=4.62211;SAR=91;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:196:1,194:1:12:194:6717:-603.266,-57.6409,0
NC_002945.4	96244	.	G	A	3799.54	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=127;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=12.0553;EPPR=7.35324;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=172.545;PAIRED=0.984252;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4296;QR=29;RO=2;RPL=54;RPP=9.18275;RPPR=7.35324;RPR=73;RUN=1;SAF=75;SAP=12.0553;SAR=52;SRF=0;SRP=7.35324;SRR=2;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:132:2,127:2:29:127:4296:-384.019,-36.2129,0
NC_002945.4	103811	.	C	G	3933.79	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=146;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=11.5772;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=51.3973;MQMR=0;NS=1;NUMALT=1;ODDS=207.004;PAIRED=0.965753;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4736;QR=0;RO=0;RPL=81;RPP=6.81781;RPPR=0;RPR=65;RUN=1;SAF=68;SAP=4.49761;SAR=78;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:147:0,146:0:0:146:4736:-398.303,-43.9504,0
NC_002945.4	103813	.	A	G	3826.65	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=139;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=14.3988;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=51.1079;MQMR=0;NS=1;NUMALT=1;ODDS=197.3;PAIRED=0.964029;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4641;QR=0;RO=0;RPL=78;RPP=7.52509;RPPR=0;RPR=61;RUN=1;SAF=67;SAP=3.40085;SAR=72;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:140:0,139:0:0:139:4641:-387.802,-41.8432,0
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NC_002945.4	117800	.	C	G	6475.1	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=239;CIGAR=1X;DP=244;DPB=244;DPRA=0;EPP=9.63375;EPPR=11.6962;GTI=0;LEN=1;MEANALT=2;MQ=59.9958;MQMR=60;NS=1;NUMALT=1;ODDS=320.689;PAIRED=0.987448;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7262;QR=50;RO=4;RPL=130;RPP=7.01708;RPPR=11.6962;RPR=109;RUN=1;SAF=125;SAP=4.10966;SAR=114;SRF=4;SRP=11.6962;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:244:4,239:4:50:239:7262:-648.931,-68.6623,0
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NC_002945.4	130166	.	C	T	6618.14	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=215;CIGAR=1X;DP=216;DPB=216;DPRA=0;EPP=5.28277;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=297.525;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7416;QR=14;RO=1;RPL=97;RPP=7.46434;RPPR=5.18177;RPR=118;RUN=1;SAF=120;SAP=9.32272;SAR=95;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:216:1,215:1:14:215:7416:-666.006,-63.6225,0
NC_002945.4	130237	.	T	C	7202.62	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=233;CIGAR=1X;DP=233;DPB=233;DPRA=0;EPP=3.01962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=327.612;PAIRED=0.982833;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=8073;QR=0;RO=0;RPL=93;RPP=23.5973;RPPR=0;RPR=140;RUN=1;SAF=126;SAP=6.37468;SAR=107;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:233:0,233:0:0:233:8073:-726.509,-70.14,0
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NC_002945.4	143799	.	T	C	8012.16	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=275;CIGAR=1X;DP=275;DPB=275;DPRA=0;EPP=4.34477;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=385.836;PAIRED=0.989091;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=8970;QR=0;RO=0;RPL=136;RPP=3.08137;RPPR=0;RPR=139;RUN=1;SAF=113;SAP=21.9692;SAR=162;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:275:0,275:0:0:275:8970:-807.209,-82.7833,0
NC_002945.4	144992	.	G	A	6780.82	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=224;CIGAR=1X;DP=224;DPB=224;DPRA=0;EPP=7.70223;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=315.135;PAIRED=0.973214;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7602;QR=0;RO=0;RPL=133;RPP=20.1106;RPPR=0;RPR=91;RUN=1;SAF=108;SAP=3.63072;SAR=116;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:224:0,224:0:0:224:7602:-684.145,-67.4307,0
NC_002945.4	148871	.	G	A	7675.94	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=246;CIGAR=1X;DP=246;DPB=246;DPRA=0;EPP=18.5813;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=345.634;PAIRED=0.99187;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=8604;QR=0;RO=0;RPL=140;RPP=13.2145;RPPR=0;RPR=106;RUN=1;SAF=130;SAP=4.74042;SAR=116;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:246:0,246:0:0:246:8604:-774.226,-74.0534,0
NC_002945.4	151025	.	N	.	.	.	.	GT	./.
NC_002945.4	151026	.	N	.	.	.	.	GT	./.
NC_002945.4	151027	.	N	.	.	.	.	GT	./.
NC_002945.4	151028	.	N	.	.	.	.	GT	./.
NC_002945.4	151029	.	N	.	.	.	.	GT	./.
NC_002945.4	151030	.	N	.	.	.	.	GT	./.
NC_002945.4	151031	.	N	.	.	.	.	GT	./.
NC_002945.4	151032	.	N	.	.	.	.	GT	./.
NC_002945.4	151033	.	N	.	.	.	.	GT	./.
NC_002945.4	151034	.	N	.	.	.	.	GT	./.
NC_002945.4	151035	.	N	.	.	.	.	GT	./.
NC_002945.4	151036	.	N	.	.	.	.	GT	./.
NC_002945.4	151037	.	N	.	.	.	.	GT	./.
NC_002945.4	151038	.	N	.	.	.	.	GT	./.
NC_002945.4	151039	.	N	.	.	.	.	GT	./.
NC_002945.4	151040	.	N	.	.	.	.	GT	./.
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NC_002945.4	160535	.	T	C	6075.48	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=206;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=3.05246;EPPR=5.18177;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=285.828;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6820;QR=12;RO=1;RPL=125;RPP=23.4179;RPPR=5.18177;RPR=81;RUN=1;SAF=97;SAP=4.52822;SAR=109;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:209:1,206:1:12:206:6820:-612.613,-61.2332,0
NC_002945.4	165799	.	G	A	6709.59	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=218;CIGAR=1X;DP=223;DPB=223;DPRA=0;EPP=3.36889;EPPR=7.35324;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=296.253;PAIRED=0.995413;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7519;QR=29;RO=2;RPL=113;RPP=3.6478;RPPR=3.0103;RPR=105;RUN=1;SAF=117;SAP=5.56029;SAR=101;SRF=1;SRP=3.0103;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:223:2,218:2:29:218:7519:-673.912,-63.612,0
NC_002945.4	166696	.	A	G	5933.93	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=206;CIGAR=1X;DP=207;DPB=207;DPRA=0;EPP=5.70883;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=290.182;PAIRED=0.985437;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6647;QR=0;RO=0;RPL=115;RPP=9.08199;RPPR=0;RPR=91;RUN=1;SAF=98;SAP=4.06441;SAR=108;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:207:0,206:0:0:206:6647:-598.139,-62.0122,0
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NC_002945.4	198890	.	T	G	9345.58	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=296;CIGAR=1X;DP=297;DPB=297;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=414.948;PAIRED=0.989865;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=10474;QR=0;RO=0;RPL=169;RPP=15.9511;RPPR=0;RPR=127;RUN=1;SAF=119;SAP=27.6888;SAR=177;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:297:0,296:0:0:296:10474:-942.33,-89.1049,0
NC_002945.4	223919	.	C	T	4089.38	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=149;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=6.28937;EPPR=7.35324;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=203.79;PAIRED=0.966443;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4622;QR=24;RO=2;RPL=95;RPP=27.5086;RPPR=7.35324;RPR=54;RUN=1;SAF=82;SAP=6.28937;SAR=67;SRF=0;SRP=7.35324;SRR=2;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:155:2,149:2:24:149:4622:-413.805,-43.2972,0
NC_002945.4	228109	.	C	T	5468.09	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=184;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=4.70971;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=255.442;PAIRED=0.98913;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6122;QR=12;RO=1;RPL=95;RPP=3.43515;RPPR=5.18177;RPR=89;RUN=1;SAF=93;SAP=3.05751;SAR=91;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:186:1,184:1:12:184:6122:-549.815,-54.6106,0
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NC_002945.4	232188	.	G	C	5271.54	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=190;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=8.54184;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=260.907;PAIRED=0.989474;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5986;QR=25;RO=1;RPL=128;RPP=52.7942;RPPR=5.18177;RPR=62;RUN=1;SAF=82;SAP=10.7362;SAR=108;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:192:1,190:1:25:190:5986:-536.343,-55.1919,0
NC_002945.4	295519	.	T	C	8753.33	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=288;CIGAR=1X;DP=291;DPB=291;DPRA=0;EPP=8.10723;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQ=59.875;MQMR=0;NS=1;NUMALT=1;ODDS=403.858;PAIRED=0.993056;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=9924;QR=0;RO=0;RPL=81;RPP=122.713;RPPR=0;RPR=207;RUN=1;SAF=158;SAP=8.92153;SAR=130;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:291:0,288:0:0:288:9924:-892.755,-86.6966,0
NC_002945.4	299636	.	A	G	10654.0	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=335;CIGAR=1X;DP=335;DPB=335;DPRA=0;EPP=3.17235;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=469.014;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=11894;QR=0;RO=0;RPL=156;RPP=6.43928;RPPR=0;RPR=179;RUN=1;SAF=178;SAP=5.86887;SAR=157;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:335:0,335:0:0:335:11894:-1070.12,-100.845,0
NC_002945.4	304339	.	G	A	6330.75	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=210;CIGAR=1X;DP=212;DPB=212;DPRA=0;EPP=3.38255;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=286.107;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7113;QR=36;RO=1;RPL=115;RPP=7.14644;RPPR=5.18177;RPR=95;RUN=1;SAF=113;SAP=5.65743;SAR=97;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:212:1,210:1:36:210:7113:-636.664,-60.1586,0
NC_002945.4	306695	.	N	.	.	.	.	GT	./.
NC_002945.4	306696	.	N	.	.	.	.	GT	./.
NC_002945.4	306697	.	N	.	.	.	.	GT	./.
NC_002945.4	306698	.	N	.	.	.	.	GT	./.
NC_002945.4	306699	.	N	.	.	.	.	GT	./.
NC_002945.4	306700	.	N	.	.	.	.	GT	./.
NC_002945.4	306701	.	N	.	.	.	.	GT	./.
NC_002945.4	306702	.	N	.	.	.	.	GT	./.
NC_002945.4	306703	.	N	.	.	.	.	GT	./.
NC_002945.4	306704	.	N	.	.	.	.	GT	./.
NC_002945.4	319911	.	C	T	5833.3	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=187;CIGAR=1X;DP=189;DPB=189;DPRA=0;EPP=3.95088;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=59.9412;MQMR=0;NS=1;NUMALT=1;ODDS=263.842;PAIRED=0.989305;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6529;QR=0;RO=0;RPL=101;RPP=5.62303;RPPR=0;RPR=86;RUN=1;SAF=95;SAP=3.11481;SAR=92;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:189:0,187:0:0:187:6529:-587.398,-56.2926,0
NC_002945.4	331051	.	A	G	4814.62	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=172;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=19.3721;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=237.676;PAIRED=0.988372;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5572;QR=16;RO=1;RPL=98;RPP=10.2822;RPPR=5.18177;RPR=74;RUN=1;SAF=36;SAP=129.259;SAR=136;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:173:1,172:1:16:172:5572:-499.937,-50.4782,0
NC_002945.4	331241	.	T	G	5110.06	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=162;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=24.4569;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=229.185;PAIRED=0.993827;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5743;QR=0;RO=0;RPL=76;RPP=4.35072;RPPR=0;RPR=86;RUN=1;SAF=83;SAP=3.22477;SAR=79;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:162:0,162:0:0:162:5743:-516.925,-48.7669,0
NC_002945.4	331411	.	A	G	5596.99	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=178;CIGAR=1X;DP=178;DPB=178;DPRA=0;EPP=4.23023;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=251.366;PAIRED=0.994382;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6275;QR=0;RO=0;RPL=87;RPP=3.20549;RPPR=0;RPR=91;RUN=1;SAF=105;SAP=15.5024;SAR=73;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:178:0,178:0:0:178:6275:-564.761,-53.5833,0
NC_002945.4	332124	.	C	T	613.008	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=26;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=8.35546;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=59.2308;MQMR=0;NS=1;NUMALT=1;ODDS=40.6488;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=795;QR=0;RO=0;RPL=26;RPP=59.4686;RPPR=0;RPR=0;RUN=1;SAF=17;SAP=8.35546;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:795:-71.7916,-7.82678,0
NC_002945.4	332128	.	C	G	571.935	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=24;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=12.0581;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=59.1667;MQMR=0;NS=1;NUMALT=1;ODDS=37.8762;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=751;QR=0;RO=0;RPL=24;RPP=55.1256;RPPR=0;RPR=0;RUN=1;SAF=17;SAP=12.0581;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:751:-67.7893,-7.22472,0
NC_002945.4	332144	.	C	T	209.957	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=58.3333;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=0;RO=0;RPL=12;RPP=29.068;RPPR=0;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,12:0:0:12:353:-31.8328,-3.61236,0
NC_002945.4	332145	.	G	T	194.77200000000002	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=58.4615;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=0;RO=0;RPL=13;RPP=31.2394;RPPR=0;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:345:-31.2174,-3.91339,0
NC_002945.4	332154	.	G	C	244.687	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=58.4615;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=0;RO=0;RPL=13;RPP=31.2394;RPPR=0;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:400:-36.2088,-3.91339,0
NC_002945.4	332160	.	N	.	.	.	.	GT	./.
NC_002945.4	332161	.	N	.	.	.	.	GT	./.
NC_002945.4	332162	.	N	.	.	.	.	GT	./.
NC_002945.4	332163	.	N	.	.	.	.	GT	./.
NC_002945.4	332164	.	N	.	.	.	.	GT	./.
NC_002945.4	332165	.	N	.	.	.	.	GT	./.
NC_002945.4	332166	.	N	.	.	.	.	GT	./.
NC_002945.4	332167	.	N	.	.	.	.	GT	./.
NC_002945.4	332168	.	N	.	.	.	.	GT	./.
NC_002945.4	332169	.	N	.	.	.	.	GT	./.
NC_002945.4	332170	.	N	.	.	.	.	GT	./.
NC_002945.4	332171	.	N	.	.	.	.	GT	./.
NC_002945.4	332172	.	N	.	.	.	.	GT	./.
NC_002945.4	332173	.	N	.	.	.	.	GT	./.
NC_002945.4	332174	.	N	.	.	.	.	GT	./.
NC_002945.4	332175	.	N	.	.	.	.	GT	./.
NC_002945.4	332176	.	N	.	.	.	.	GT	./.
NC_002945.4	332177	.	N	.	.	.	.	GT	./.
NC_002945.4	332178	.	N	.	.	.	.	GT	./.
NC_002945.4	332179	.	N	.	.	.	.	GT	./.
NC_002945.4	332180	.	N	.	.	.	.	GT	./.
NC_002945.4	332181	.	N	.	.	.	.	GT	./.
NC_002945.4	332182	.	N	.	.	.	.	GT	./.
NC_002945.4	332183	.	N	.	.	.	.	GT	./.
NC_002945.4	332184	.	N	.	.	.	.	GT	./.
NC_002945.4	332185	.	N	.	.	.	.	GT	./.
NC_002945.4	332186	.	N	.	.	.	.	GT	./.
NC_002945.4	332187	.	N	.	.	.	.	GT	./.
NC_002945.4	332188	.	N	.	.	.	.	GT	./.
NC_002945.4	332189	.	N	.	.	.	.	GT	./.
NC_002945.4	332190	.	N	.	.	.	.	GT	./.
NC_002945.4	332191	.	N	.	.	.	.	GT	./.
NC_002945.4	332192	.	N	.	.	.	.	GT	./.
NC_002945.4	332193	.	N	.	.	.	.	GT	./.
NC_002945.4	332215	.	C	G	534.316	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=23;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=52.9542;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=36.4899;PAIRED=0.913043;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=821;QR=0;RO=0;RPL=0;RPP=52.9542;RPPR=0;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:821:-74.2027,-6.92369,0
NC_002945.4	332218	.	A	G	515.344	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=23;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=52.9542;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=36.4899;PAIRED=0.913043;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=800;QR=0;RO=0;RPL=0;RPP=52.9542;RPPR=0;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:800:-72.3055,-6.92369,0
NC_002945.4	333010	.	T	G	2742.95	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=89;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=15.9171;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=127.985;PAIRED=0.988764;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3120;QR=0;RO=0;RPL=56;RPP=15.9171;RPPR=0;RPR=33;RUN=1;SAF=54;SAP=11.8182;SAR=35;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:89:0,89:0:0:89:3120:-280.975,-26.7917,0
NC_002945.4	333461	.	N	.	.	.	.	GT	./.
NC_002945.4	333462	.	N	.	.	.	.	GT	./.
NC_002945.4	333463	.	N	.	.	.	.	GT	./.
NC_002945.4	333464	.	N	.	.	.	.	GT	./.
NC_002945.4	333465	.	N	.	.	.	.	GT	./.
NC_002945.4	333466	.	N	.	.	.	.	GT	./.
NC_002945.4	333467	.	N	.	.	.	.	GT	./.
NC_002945.4	333468	.	N	.	.	.	.	GT	./.
NC_002945.4	333469	.	N	.	.	.	.	GT	./.
NC_002945.4	333470	.	N	.	.	.	.	GT	./.
NC_002945.4	333471	.	N	.	.	.	.	GT	./.
NC_002945.4	333472	.	N	.	.	.	.	GT	./.
NC_002945.4	333473	.	N	.	.	.	.	GT	./.
NC_002945.4	333474	.	N	.	.	.	.	GT	./.
NC_002945.4	333475	.	N	.	.	.	.	GT	./.
NC_002945.4	333476	.	N	.	.	.	.	GT	./.
NC_002945.4	333477	.	N	.	.	.	.	GT	./.
NC_002945.4	333478	.	N	.	.	.	.	GT	./.
NC_002945.4	333479	.	N	.	.	.	.	GT	./.
NC_002945.4	333480	.	N	.	.	.	.	GT	./.
NC_002945.4	333481	.	N	.	.	.	.	GT	./.
NC_002945.4	333482	.	N	.	.	.	.	GT	./.
NC_002945.4	333483	.	N	.	.	.	.	GT	./.
NC_002945.4	333484	.	N	.	.	.	.	GT	./.
NC_002945.4	333485	.	N	.	.	.	.	GT	./.
NC_002945.4	333486	.	N	.	.	.	.	GT	./.
NC_002945.4	333519	.	N	.	.	.	.	GT	./.
NC_002945.4	333520	.	N	.	.	.	.	GT	./.
NC_002945.4	333521	.	N	.	.	.	.	GT	./.
NC_002945.4	333522	.	N	.	.	.	.	GT	./.
NC_002945.4	333523	.	N	.	.	.	.	GT	./.
NC_002945.4	333629	.	N	.	.	.	.	GT	./.
NC_002945.4	333630	.	N	.	.	.	.	GT	./.
NC_002945.4	333631	.	N	.	.	.	.	GT	./.
NC_002945.4	333632	.	N	.	.	.	.	GT	./.
NC_002945.4	334320	.	T	C	4403.03	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=158;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=3.88988;EPPR=3.0103;GTI=0;LEN=1;MEANALT=2;MQ=52.481;MQMR=39;NS=1;NUMALT=1;ODDS=205.555;PAIRED=0.987342;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5203;QR=70;RO=2;RPL=71;RPP=6.52863;RPPR=7.35324;RPR=87;RUN=1;SAF=84;SAP=4.38465;SAR=74;SRF=1;SRP=3.0103;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:161:2,158:2:70:158:5203:-443.268,-42.0072,0
NC_002945.4	334323	.	T	C	4501.2	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=160;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=4.96463;EPPR=3.0103;GTI=0;LEN=1;MEANALT=1;MQ=52.55;MQMR=39;NS=1;NUMALT=1;ODDS=206.968;PAIRED=0.9875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5317;QR=76;RO=2;RPL=75;RPP=4.36747;RPPR=7.35324;RPR=85;RUN=1;SAF=87;SAP=5.67035;SAR=73;SRF=1;SRP=3.0103;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:162:2,160:2:76:160:5317:-453.113,-42.0292,0
NC_002945.4	336585	.	N	.	.	.	.	GT	./.
NC_002945.4	336586	.	N	.	.	.	.	GT	./.
NC_002945.4	336587	.	N	.	.	.	.	GT	./.
NC_002945.4	336588	.	N	.	.	.	.	GT	./.
NC_002945.4	336589	.	N	.	.	.	.	GT	./.
NC_002945.4	336590	.	N	.	.	.	.	GT	./.
NC_002945.4	336591	.	N	.	.	.	.	GT	./.
NC_002945.4	336592	.	N	.	.	.	.	GT	./.
NC_002945.4	336593	.	N	.	.	.	.	GT	./.
NC_002945.4	336594	.	N	.	.	.	.	GT	./.
NC_002945.4	336595	.	N	.	.	.	.	GT	./.
NC_002945.4	336596	.	N	.	.	.	.	GT	./.
NC_002945.4	336597	.	N	.	.	.	.	GT	./.
NC_002945.4	336598	.	N	.	.	.	.	GT	./.
NC_002945.4	336599	.	N	.	.	.	.	GT	./.
NC_002945.4	336600	.	N	.	.	.	.	GT	./.
NC_002945.4	336601	.	N	.	.	.	.	GT	./.
NC_002945.4	336602	.	N	.	.	.	.	GT	./.
NC_002945.4	339375	.	N	.	.	.	.	GT	./.
NC_002945.4	339376	.	N	.	.	.	.	GT	./.
NC_002945.4	339377	.	N	.	.	.	.	GT	./.
NC_002945.4	339378	.	N	.	.	.	.	GT	./.
NC_002945.4	339379	.	N	.	.	.	.	GT	./.
NC_002945.4	339380	.	N	.	.	.	.	GT	./.
NC_002945.4	339381	.	N	.	.	.	.	GT	./.
NC_002945.4	339382	.	N	.	.	.	.	GT	./.
NC_002945.4	339383	.	N	.	.	.	.	GT	./.
NC_002945.4	339384	.	N	.	.	.	.	GT	./.
NC_002945.4	339385	.	N	.	.	.	.	GT	./.
NC_002945.4	339386	.	N	.	.	.	.	GT	./.
NC_002945.4	339387	.	N	.	.	.	.	GT	./.
NC_002945.4	339388	.	N	.	.	.	.	GT	./.
NC_002945.4	339389	.	N	.	.	.	.	GT	./.
NC_002945.4	339390	.	N	.	.	.	.	GT	./.
NC_002945.4	339391	.	N	.	.	.	.	GT	./.
NC_002945.4	339392	.	N	.	.	.	.	GT	./.
NC_002945.4	339393	.	N	.	.	.	.	GT	./.
NC_002945.4	339394	.	N	.	.	.	.	GT	./.
NC_002945.4	339395	.	N	.	.	.	.	GT	./.
NC_002945.4	339396	.	N	.	.	.	.	GT	./.
NC_002945.4	339397	.	N	.	.	.	.	GT	./.
NC_002945.4	339398	.	N	.	.	.	.	GT	./.
NC_002945.4	339399	.	N	.	.	.	.	GT	./.
NC_002945.4	339400	.	N	.	.	.	.	GT	./.
NC_002945.4	339401	.	N	.	.	.	.	GT	./.
NC_002945.4	339402	.	N	.	.	.	.	GT	./.
NC_002945.4	339403	.	N	.	.	.	.	GT	./.
NC_002945.4	339404	.	N	.	.	.	.	GT	./.
NC_002945.4	339405	.	N	.	.	.	.	GT	./.
NC_002945.4	339406	.	N	.	.	.	.	GT	./.
NC_002945.4	339407	.	N	.	.	.	.	GT	./.
NC_002945.4	339408	.	N	.	.	.	.	GT	./.
NC_002945.4	339409	.	N	.	.	.	.	GT	./.
NC_002945.4	339410	.	N	.	.	.	.	GT	./.
NC_002945.4	339411	.	N	.	.	.	.	GT	./.
NC_002945.4	340088	.	G	A	5406.05	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=169;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=4.05106;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=59.503;MQMR=0;NS=1;NUMALT=1;ODDS=238.889;PAIRED=0.994083;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6099;QR=0;RO=0;RPL=58;RPP=39.103;RPPR=0;RPR=111;RUN=1;SAF=89;SAP=4.05106;SAR=80;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:170:0,169:0:0:169:6099:-548.098,-50.8741,0
NC_002945.4	340090	.	C	T	5215.14	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=169;CIGAR=1X;DP=169;DPB=169;DPRA=0;EPP=5.90131;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=59.5562;MQMR=0;NS=1;NUMALT=1;ODDS=238.889;PAIRED=0.994083;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5873;QR=0;RO=0;RPL=62;RPP=29.0294;RPPR=0;RPR=107;RUN=1;SAF=88;SAP=3.6399;SAR=81;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:169:0,169:0:0:169:5873:-528.12,-50.8741,0
NC_002945.4	340091	.	G	A	5177.61	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=167;CIGAR=1X;DP=169;DPB=169;DPRA=0;EPP=4.06353;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=59.5509;MQMR=60;NS=1;NUMALT=1;ODDS=231.971;PAIRED=0.994012;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5821;QR=12;RO=1;RPL=66;RPP=18.9388;RPPR=5.18177;RPR=101;RUN=1;SAF=88;SAP=4.06353;SAR=79;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:169:1,167:1:12:167:5821:-522.292,-49.493,0
NC_002945.4	340092	.	G	C	5397.61	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=169;CIGAR=1X;DP=169;DPB=169;DPRA=0;EPP=3.6399;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=59.5562;MQMR=0;NS=1;NUMALT=1;ODDS=238.889;PAIRED=0.994083;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6064;QR=0;RO=0;RPL=66;RPP=20.6005;RPPR=0;RPR=103;RUN=1;SAF=88;SAP=3.6399;SAR=81;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:169:0,169:0:0:169:6064:-545.287,-50.8741,0
NC_002945.4	340097	.	C	G	5327.71	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=172;CIGAR=1X;DP=172;DPB=172;DPRA=0;EPP=3.2123;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=59.564;MQMR=0;NS=1;NUMALT=1;ODDS=243.048;PAIRED=0.994186;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5985;QR=0;RO=0;RPL=67;RPP=21.2406;RPPR=0;RPR=105;RUN=1;SAF=89;SAP=3.46479;SAR=83;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:172:0,172:0:0:172:5985:-538.313,-51.7772,0
NC_002945.4	362818	.	T	C	560.505	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=20;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=3.44459;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=58.65;MQMR=60;NS=1;NUMALT=1;ODDS=29.5287;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=688;QR=14;RO=1;RPL=6;RPP=9.95901;RPPR=5.18177;RPR=14;RUN=1;SAF=3;SAP=24.2907;SAR=17;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:1,20:1:14:20:688:-60.3388,-4.92164,0
NC_002945.4	364560	.	A	G	6958.35	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=223;CIGAR=1X;DP=225;DPB=225;DPRA=0;EPP=5.20125;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=313.749;PAIRED=0.986547;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7781;QR=0;RO=0;RPL=110;RPP=3.09794;RPPR=0;RPR=113;RUN=1;SAF=119;SAP=5.20125;SAR=104;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:225:0,223:0:0:223:7781:-700.098,-67.1297,0
NC_002945.4	364804	.	T	C	7819.2	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=257;CIGAR=1X;DP=258;DPB=258;DPRA=0;EPP=14.5774;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=360.883;PAIRED=0.992218;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=8809;QR=0;RO=0;RPL=167;RPP=53.1063;RPPR=0;RPR=90;RUN=1;SAF=116;SAP=8.29112;SAR=141;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:258:0,257:0:0:257:8809:-792.58,-77.3647,0
NC_002945.4	366022	.	T	C	6724.71	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=222;CIGAR=1X;DP=226;DPB=226;DPRA=0;EPP=3.1668;EPPR=5.18177;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=307.516;PAIRED=0.995495;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7532;QR=14;RO=1;RPL=124;RPP=9.62253;RPPR=5.18177;RPR=98;RUN=1;SAF=121;SAP=6.92286;SAR=101;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:226:1,222:1:14:222:7532:-676.448,-65.868,0
NC_002945.4	402148	.	G	T	136.18200000000002	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=10.7656;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=36.2857;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=0;RO=0;RPL=1;RPP=10.7656;RPPR=0;RPR=6;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:226:-18.2496,-2.10721,0
NC_002945.4	407246	.	C	G	3529.19	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=137;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=16.3403;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=194.527;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4114;QR=0;RO=0;RPL=75;RPP=5.68898;RPPR=0;RPR=62;RUN=1;SAF=26;SAP=117.528;SAR=111;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:138:0,137:0:0:137:4114:-370.246,-41.2411,0
NC_002945.4	430077	.	C	T	6754.17	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=223;CIGAR=1X;DP=224;DPB=224;DPRA=0;EPP=3.09794;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=59.8475;MQMR=60;NS=1;NUMALT=1;ODDS=308.579;PAIRED=0.986547;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7557;QR=14;RO=1;RPL=118;RPP=4.65594;RPPR=5.18177;RPR=105;RUN=1;SAF=117;SAP=4.18854;SAR=106;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:224:1,223:1:14:223:7557:-678.622,-66.0307,0
NC_002945.4	438482	.	C	G	4097.89	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=137;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=38.0233;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=190.372;PAIRED=0.992701;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4684;QR=13;RO=1;RPL=52;RPP=20.2711;RPPR=5.18177;RPR=85;RUN=1;SAF=48;SAP=29.6544;SAR=89;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:139:1,137:1:13:137:4684:-420.35,-40.3721,0
NC_002945.4	441762	.	C	T	5025.28	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=172;CIGAR=1X;DP=172;DPB=172;DPRA=0;EPP=3.2123;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=243.048;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5624;QR=0;RO=0;RPL=88;RPP=3.2123;RPPR=0;RPR=84;RUN=1;SAF=84;SAP=3.2123;SAR=88;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:172:0,172:0:0:172:5624:-506.238,-51.7772,0
NC_002945.4	449922	.	T	C	6604.74	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=215;CIGAR=1X;DP=215;DPB=215;DPRA=0;EPP=3.2628;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=302.658;PAIRED=0.995349;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7411;QR=0;RO=0;RPL=82;RPP=29.2801;RPPR=0;RPR=133;RUN=1;SAF=110;SAP=3.2628;SAR=105;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:215:0,215:0:0:215:7411:-666.958,-64.7215,0
NC_002945.4	452398	.	G	A	6291.59	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=208;CIGAR=1X;DP=212;DPB=212;DPRA=0;EPP=4.51363;EPPR=5.18177;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=284.344;PAIRED=0.990385;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7063;QR=32;RO=1;RPL=111;RPP=5.0565;RPPR=5.18177;RPR=97;RUN=1;SAF=97;SAP=5.0565;SAR=111;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:212:1,208:1:32:208:7063:-632.586,-59.9909,0
NC_002945.4	460722	.	G	A	5798.66	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=186;CIGAR=1X;DP=187;DPB=187;DPRA=0;EPP=4.17776;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=262.456;PAIRED=0.989247;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6492;QR=0;RO=0;RPL=101;RPP=5.99899;RPPR=0;RPR=85;RUN=1;SAF=87;SAP=4.69144;SAR=99;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:187:0,186:0:0:186:6492:-584.147,-55.9916,0
NC_002945.4	467343	.	C	T	5759.72	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=195;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=4.35773;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=59.9128;MQMR=60;NS=1;NUMALT=1;ODDS=270.357;PAIRED=0.984615;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6450;QR=12;RO=1;RPL=88;RPP=7.03031;RPPR=5.18177;RPR=107;RUN=1;SAF=99;SAP=3.11052;SAR=96;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:196:1,195:1:12:195:6450:-579.344,-57.8019,0
NC_002945.4	467402	.	C	A	6945.54	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=229;CIGAR=1X;DP=234;DPB=234;DPRA=0;EPP=5.75072;EPPR=3.0103;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=311.818;PAIRED=0.982533;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7804;QR=27;RO=2;RPL=90;RPP=25.7776;RPPR=7.35324;RPR=139;RUN=1;SAF=116;SAP=3.09564;SAR=113;SRF=1;SRP=3.0103;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:234:2,229:2:27:229:7804:-699.751,-67.1033,0
NC_002945.4	479644	.	G	A	8457.46	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=272;CIGAR=1X;DP=276;DPB=276;DPRA=0;EPP=5.05404;EPPR=3.73412;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=365.632;PAIRED=0.992647;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9483;QR=39;RO=3;RPL=138;RPP=3.13803;RPPR=3.73412;RPR=134;RUN=1;SAF=118;SAP=13.3567;SAR=154;SRF=1;SRP=3.73412;SRR=2;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:276:3,272:3:39:272:9483:-849.666,-79.2658,0
NC_002945.4	483845	.	T	C	9577.57	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=305;CIGAR=1X;DP=308;DPB=308;DPRA=0;EPP=3.07438;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=427.425;PAIRED=0.993443;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=10694;QR=0;RO=0;RPL=154;RPP=3.07438;RPPR=0;RPR=151;RUN=1;SAF=142;SAP=6.15004;SAR=163;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:308:0,305:0:0:305:10694:-962.105,-91.8142,0
NC_002945.4	485584	.	G	A	9074.74	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=286;CIGAR=1X;DP=287;DPB=287;DPRA=0;EPP=3.04067;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=392.905;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10160;QR=26;RO=1;RPL=145;RPP=3.13178;RPPR=5.18177;RPR=141;RUN=1;SAF=161;SAP=12.8503;SAR=125;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:287:1,286:1:26:286:10160:-911.549,-83.7958,0
NC_002945.4	488897	.	G	T	5612.97	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=209;CIGAR=1X;DP=216;DPB=216;DPRA=0;EPP=12.9949;EPPR=6.91895;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=267.299;PAIRED=0.985646;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6390;QR=81;RO=5;RPL=80;RPP=27.9563;RPPR=3.44459;RPR=129;RUN=1;SAF=122;SAP=15.7378;SAR=87;SRF=4;SRP=6.91895;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:216:5,209:5:81:209:6390:-567.731,-57.1011,0
NC_002945.4	490878	.	G	A	9463.91	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=294;CIGAR=1X;DP=294;DPB=294;DPRA=0;EPP=6.5851;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=412.176;PAIRED=0.993197;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=10571;QR=0;RO=0;RPL=141;RPP=4.07388;RPPR=0;RPR=153;RUN=1;SAF=137;SAP=5.96468;SAR=157;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:294:0,294:0:0:294:10571:-951.146,-88.5028,0
NC_002945.4	507929	.	T	C	7881.24	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=248;CIGAR=1X;DP=248;DPB=248;DPRA=0;EPP=4.72646;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=348.406;PAIRED=0.983871;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=8805;QR=0;RO=0;RPL=122;RPP=3.15039;RPPR=0;RPR=126;RUN=1;SAF=119;SAP=3.88589;SAR=129;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:248:0,248:0:0:248:8805:-792.283,-74.6554,0
NC_002945.4	518522	.	C	T	6237.06	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=201;CIGAR=1X;DP=202;DPB=202;DPRA=0;EPP=14.7751;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=59.9055;MQMR=60;NS=1;NUMALT=1;ODDS=278.414;PAIRED=0.955224;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7020;QR=13;RO=1;RPL=85;RPP=13.3923;RPPR=5.18177;RPR=116;RUN=1;SAF=120;SAP=19.4422;SAR=81;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:202:1,201:1:13:201:7020:-630.412,-59.5081,0
NC_002945.4	519412	.	T	C	5193.44	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=166;CIGAR=1X;DP=168;DPB=168;DPRA=0;EPP=6.35908;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=234.73;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5818;QR=0;RO=0;RPL=82;RPP=3.06262;RPPR=0;RPR=84;RUN=1;SAF=89;SAP=4.89399;SAR=77;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:168:0,166:0:0:166:5818:-523.497,-49.971,0
NC_002945.4	541571	.	T	C	6198.41	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=200;CIGAR=1X;DP=200;DPB=200;DPRA=0;EPP=28.0257;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=281.864;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6976;QR=0;RO=0;RPL=115;RPP=12.7819;RPPR=0;RPR=85;RUN=1;SAF=87;SAP=10.3499;SAR=113;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:200:0,200:0:0:200:6976:-627.809,-60.206,0
NC_002945.4	544180	.	C	T	6569.87	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=221;CIGAR=1X;DP=222;DPB=222;DPRA=0;EPP=4.19921;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=306.276;PAIRED=0.995475;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7379;QR=12;RO=1;RPL=137;RPP=30.6106;RPPR=5.18177;RPR=84;RUN=1;SAF=115;SAP=3.80618;SAR=106;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:222:1,221:1:12:221:7379:-662.868,-65.6287,0
NC_002945.4	577068	.	G	T	4336.47	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=156;CIGAR=1X;DP=168;DPB=168;DPRA=0;EPP=12.42;EPPR=9.52472;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=131.766;PAIRED=0.980769;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5194;QR=377;RO=12;RPL=86;RPP=6.57374;RPPR=29.068;RPR=70;RUN=1;SAF=65;SAP=12.42;SAR=91;SRF=9;SRP=9.52472;SRR=3;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:168:12,156:12:377:156:5194:-433.314,-16.3487,0
NC_002945.4	598704	.	C	G	8140.15	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=261;CIGAR=1X;DP=261;DPB=261;DPRA=0;EPP=30.0414;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=59.7816;MQMR=0;NS=1;NUMALT=1;ODDS=366.428;PAIRED=0.984674;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=9196;QR=0;RO=0;RPL=87;RPP=65.983;RPPR=0;RPR=174;RUN=1;SAF=135;SAP=3.68421;SAR=126;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:261:0,261:0:0:261:9196:-827.111,-78.5688,0
NC_002945.4	600207	.	T	C	10012.0	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=320;CIGAR=1X;DP=321;DPB=321;DPRA=0;EPP=46.4397;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=448.219;PAIRED=0.996875;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=11244;QR=0;RO=0;RPL=135;RPP=19.9749;RPPR=0;RPR=185;RUN=1;SAF=169;SAP=5.20892;SAR=151;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:321:0,320:0:0:320:11244:-1011.54,-96.3296,0
NC_002945.4	608835	.	T	C	452.901	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=19;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=16.8392;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=38;MQMR=0;NS=1;NUMALT=1;ODDS=30.9448;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=667;QR=0;RO=0;RPL=4;RPP=16.8392;RPPR=0;RPR=15;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,19:0:0:19:667:-55.272,-5.71957,0
NC_002945.4	611077	.	A	G	7413.5	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=247;CIGAR=1X;DP=248;DPB=248;DPRA=0;EPP=16.382;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=342.209;PAIRED=0.995951;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8343;QR=12;RO=1;RPL=93;RPP=35.723;RPPR=5.18177;RPR=154;RUN=1;SAF=137;SAP=9.41922;SAR=110;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:248:1,247:1:12:247:8343:-749.6,-73.4554,0
NC_002945.4	622386	.	C	G	6093.98	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=199;CIGAR=1X;DP=200;DPB=200;DPRA=0;EPP=3.02121;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=275.882;PAIRED=0.979899;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6819;QR=12;RO=1;RPL=101;RPP=3.10851;RPPR=5.18177;RPR=98;RUN=1;SAF=107;SAP=5.46548;SAR=92;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:200:1,199:1:12:199:6819:-612.495,-59.006,0
NC_002945.4	624554	.	N	.	.	.	.	GT	./.
NC_002945.4	624555	.	N	.	.	.	.	GT	./.
NC_002945.4	624556	.	N	.	.	.	.	GT	./.
NC_002945.4	624557	.	N	.	.	.	.	GT	./.
NC_002945.4	624558	.	N	.	.	.	.	GT	./.
NC_002945.4	624559	.	N	.	.	.	.	GT	./.
NC_002945.4	624560	.	N	.	.	.	.	GT	./.
NC_002945.4	624561	.	N	.	.	.	.	GT	./.
NC_002945.4	624562	.	N	.	.	.	.	GT	./.
NC_002945.4	624563	.	N	.	.	.	.	GT	./.
NC_002945.4	624564	.	N	.	.	.	.	GT	./.
NC_002945.4	624565	.	N	.	.	.	.	GT	./.
NC_002945.4	624566	.	N	.	.	.	.	GT	./.
NC_002945.4	624567	.	N	.	.	.	.	GT	./.
NC_002945.4	624568	.	N	.	.	.	.	GT	./.
NC_002945.4	624569	.	N	.	.	.	.	GT	./.
NC_002945.4	624570	.	N	.	.	.	.	GT	./.
NC_002945.4	624571	.	N	.	.	.	.	GT	./.
NC_002945.4	624572	.	N	.	.	.	.	GT	./.
NC_002945.4	624573	.	N	.	.	.	.	GT	./.
NC_002945.4	624574	.	N	.	.	.	.	GT	./.
NC_002945.4	624575	.	N	.	.	.	.	GT	./.
NC_002945.4	624576	.	N	.	.	.	.	GT	./.
NC_002945.4	624577	.	N	.	.	.	.	GT	./.
NC_002945.4	624578	.	N	.	.	.	.	GT	./.
NC_002945.4	624579	.	N	.	.	.	.	GT	./.
NC_002945.4	624580	.	N	.	.	.	.	GT	./.
NC_002945.4	624581	.	N	.	.	.	.	GT	./.
NC_002945.4	624582	.	N	.	.	.	.	GT	./.
NC_002945.4	624583	.	N	.	.	.	.	GT	./.
NC_002945.4	624584	.	N	.	.	.	.	GT	./.
NC_002945.4	624585	.	N	.	.	.	.	GT	./.
NC_002945.4	624586	.	N	.	.	.	.	GT	./.
NC_002945.4	624587	.	N	.	.	.	.	GT	./.
NC_002945.4	624588	.	N	.	.	.	.	GT	./.
NC_002945.4	624589	.	N	.	.	.	.	GT	./.
NC_002945.4	624590	.	N	.	.	.	.	GT	./.
NC_002945.4	624591	.	N	.	.	.	.	GT	./.
NC_002945.4	624592	.	N	.	.	.	.	GT	./.
NC_002945.4	624593	.	N	.	.	.	.	GT	./.
NC_002945.4	624594	.	N	.	.	.	.	GT	./.
NC_002945.4	624595	.	N	.	.	.	.	GT	./.
NC_002945.4	624596	.	N	.	.	.	.	GT	./.
NC_002945.4	624597	.	N	.	.	.	.	GT	./.
NC_002945.4	624598	.	N	.	.	.	.	GT	./.
NC_002945.4	624599	.	N	.	.	.	.	GT	./.
NC_002945.4	624600	.	N	.	.	.	.	GT	./.
NC_002945.4	624601	.	N	.	.	.	.	GT	./.
NC_002945.4	624602	.	N	.	.	.	.	GT	./.
NC_002945.4	624603	.	N	.	.	.	.	GT	./.
NC_002945.4	624604	.	N	.	.	.	.	GT	./.
NC_002945.4	624605	.	N	.	.	.	.	GT	./.
NC_002945.4	624606	.	N	.	.	.	.	GT	./.
NC_002945.4	624607	.	N	.	.	.	.	GT	./.
NC_002945.4	624608	.	N	.	.	.	.	GT	./.
NC_002945.4	624609	.	N	.	.	.	.	GT	./.
NC_002945.4	624610	.	N	.	.	.	.	GT	./.
NC_002945.4	624611	.	N	.	.	.	.	GT	./.
NC_002945.4	624612	.	N	.	.	.	.	GT	./.
NC_002945.4	624613	.	N	.	.	.	.	GT	./.
NC_002945.4	624614	.	N	.	.	.	.	GT	./.
NC_002945.4	624615	.	N	.	.	.	.	GT	./.
NC_002945.4	624616	.	N	.	.	.	.	GT	./.
NC_002945.4	624617	.	N	.	.	.	.	GT	./.
NC_002945.4	624618	.	N	.	.	.	.	GT	./.
NC_002945.4	624619	.	N	.	.	.	.	GT	./.
NC_002945.4	624620	.	N	.	.	.	.	GT	./.
NC_002945.4	624621	.	N	.	.	.	.	GT	./.
NC_002945.4	624622	.	N	.	.	.	.	GT	./.
NC_002945.4	624623	.	N	.	.	.	.	GT	./.
NC_002945.4	624624	.	N	.	.	.	.	GT	./.
NC_002945.4	624625	.	N	.	.	.	.	GT	./.
NC_002945.4	624626	.	N	.	.	.	.	GT	./.
NC_002945.4	624627	.	N	.	.	.	.	GT	./.
NC_002945.4	624628	.	N	.	.	.	.	GT	./.
NC_002945.4	624629	.	N	.	.	.	.	GT	./.
NC_002945.4	624630	.	N	.	.	.	.	GT	./.
NC_002945.4	624631	.	N	.	.	.	.	GT	./.
NC_002945.4	624632	.	N	.	.	.	.	GT	./.
NC_002945.4	624633	.	N	.	.	.	.	GT	./.
NC_002945.4	624634	.	N	.	.	.	.	GT	./.
NC_002945.4	624635	.	N	.	.	.	.	GT	./.
NC_002945.4	624636	.	N	.	.	.	.	GT	./.
NC_002945.4	624637	.	N	.	.	.	.	GT	./.
NC_002945.4	624638	.	N	.	.	.	.	GT	./.
NC_002945.4	624639	.	N	.	.	.	.	GT	./.
NC_002945.4	624640	.	N	.	.	.	.	GT	./.
NC_002945.4	624641	.	N	.	.	.	.	GT	./.
NC_002945.4	624642	.	N	.	.	.	.	GT	./.
NC_002945.4	624643	.	N	.	.	.	.	GT	./.
NC_002945.4	624644	.	N	.	.	.	.	GT	./.
NC_002945.4	624645	.	N	.	.	.	.	GT	./.
NC_002945.4	624646	.	N	.	.	.	.	GT	./.
NC_002945.4	624647	.	N	.	.	.	.	GT	./.
NC_002945.4	624648	.	N	.	.	.	.	GT	./.
NC_002945.4	624649	.	N	.	.	.	.	GT	./.
NC_002945.4	624650	.	N	.	.	.	.	GT	./.
NC_002945.4	624651	.	N	.	.	.	.	GT	./.
NC_002945.4	624652	.	N	.	.	.	.	GT	./.
NC_002945.4	624653	.	N	.	.	.	.	GT	./.
NC_002945.4	624654	.	N	.	.	.	.	GT	./.
NC_002945.4	624655	.	N	.	.	.	.	GT	./.
NC_002945.4	624656	.	N	.	.	.	.	GT	./.
NC_002945.4	624657	.	N	.	.	.	.	GT	./.
NC_002945.4	624658	.	N	.	.	.	.	GT	./.
NC_002945.4	624659	.	N	.	.	.	.	GT	./.
NC_002945.4	624660	.	N	.	.	.	.	GT	./.
NC_002945.4	624661	.	N	.	.	.	.	GT	./.
NC_002945.4	624662	.	N	.	.	.	.	GT	./.
NC_002945.4	624663	.	N	.	.	.	.	GT	./.
NC_002945.4	624664	.	N	.	.	.	.	GT	./.
NC_002945.4	624665	.	N	.	.	.	.	GT	./.
NC_002945.4	624666	.	N	.	.	.	.	GT	./.
NC_002945.4	624667	.	N	.	.	.	.	GT	./.
NC_002945.4	624668	.	N	.	.	.	.	GT	./.
NC_002945.4	624669	.	N	.	.	.	.	GT	./.
NC_002945.4	624670	.	N	.	.	.	.	GT	./.
NC_002945.4	624671	.	N	.	.	.	.	GT	./.
NC_002945.4	624672	.	N	.	.	.	.	GT	./.
NC_002945.4	624673	.	N	.	.	.	.	GT	./.
NC_002945.4	624674	.	N	.	.	.	.	GT	./.
NC_002945.4	624675	.	N	.	.	.	.	GT	./.
NC_002945.4	624676	.	N	.	.	.	.	GT	./.
NC_002945.4	624677	.	N	.	.	.	.	GT	./.
NC_002945.4	624678	.	N	.	.	.	.	GT	./.
NC_002945.4	624679	.	N	.	.	.	.	GT	./.
NC_002945.4	624901	.	N	.	.	.	.	GT	./.
NC_002945.4	624902	.	N	.	.	.	.	GT	./.
NC_002945.4	624903	.	N	.	.	.	.	GT	./.
NC_002945.4	624904	.	N	.	.	.	.	GT	./.
NC_002945.4	624905	.	N	.	.	.	.	GT	./.
NC_002945.4	624906	.	N	.	.	.	.	GT	./.
NC_002945.4	624907	.	N	.	.	.	.	GT	./.
NC_002945.4	624908	.	N	.	.	.	.	GT	./.
NC_002945.4	624909	.	N	.	.	.	.	GT	./.
NC_002945.4	624910	.	N	.	.	.	.	GT	./.
NC_002945.4	624911	.	N	.	.	.	.	GT	./.
NC_002945.4	641896	.	A	C	6646.66	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=217;CIGAR=1X;DP=217;DPB=217;DPRA=0;EPP=5.26183;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=305.431;PAIRED=0.990783;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7442;QR=0;RO=0;RPL=94;RPP=11.426;RPPR=0;RPR=123;RUN=1;SAF=101;SAP=5.26183;SAR=116;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:217:0,217:0:0:217:7442:-669.755,-65.3235,0
NC_002945.4	642875	.	C	G	7980.41	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=255;CIGAR=1X;DP=256;DPB=256;DPRA=0;EPP=4.92631;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=352.807;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8971;QR=14;RO=1;RPL=164;RPP=48.3898;RPPR=5.18177;RPR=91;RUN=1;SAF=125;SAP=3.22319;SAR=130;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:256:1,255:1:14:255:8971:-805.839,-75.6637,0
NC_002945.4	644245	.	C	G	5488.97	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=190;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=3.05602;EPPR=3.0103;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=247.117;PAIRED=0.978947;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6207;QR=76;RO=2;RPL=95;RPP=3.0103;RPPR=7.35324;RPR=95;RUN=1;SAF=99;SAP=3.74174;SAR=91;SRF=1;SRP=3.0103;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:192:2,190:2:76:190:6207:-551.485,-50.5829,0
NC_002945.4	649910	.	T	C	6733.74	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=223;CIGAR=1X;DP=224;DPB=224;DPRA=0;EPP=4.65594;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=313.749;PAIRED=0.986547;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7540;QR=0;RO=0;RPL=127;RPP=12.3681;RPPR=0;RPR=96;RUN=1;SAF=118;SAP=4.65594;SAR=105;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:224:0,223:0:0:223:7540:-678.455,-67.1297,0
NC_002945.4	652349	.	G	C	8112.27	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=262;CIGAR=1X;DP=264;DPB=264;DPRA=0;EPP=4.63476;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=367.814;PAIRED=0.996183;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=9069;QR=0;RO=0;RPL=125;RPP=4.20378;RPPR=0;RPR=137;RUN=1;SAF=143;SAP=7.78422;SAR=119;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:264:0,262:0:0:262:9069:-815.907,-78.8699,0