view test-data/SRR8073662_zc.vcf @ 1:770834ba75e4 draft

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author greg
date Sat, 14 Nov 2020 09:07:53 +0000
parents ee4ef1fc23c6
children da20c7c76d06
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##fileformat=VCFv4.2
##fileDate=20190125
##source=freeBayes v1.2.0-dirty
##reference=/scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR8073662/NC_002945v4.fasta
##contig=<ID=NC_002945.4,length=4349904>
##phasing=none
##commandline="freebayes -E -1 -e 1 -u --strict-vcf -f /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR8073662/NC_002945v4.fasta /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR8073662/SRR8073662-nodup.bam --region NC_002945.4:0-100000
##filter="QUAL > 20
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus">
##INFO=<ID=DPB,Number=1,Type=Float,Description="Total read depth per bp at the locus; bases in reads overlapping / bases in haplotype">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Total number of alternate alleles in called genotypes">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated allele frequency in the range (0,1]">
##INFO=<ID=RO,Number=1,Type=Integer,Description="Count of full observations of the reference haplotype.">
##INFO=<ID=AO,Number=A,Type=Integer,Description="Count of full observations of this alternate haplotype.">
##INFO=<ID=PRO,Number=1,Type=Float,Description="Reference allele observation count, with partial observations recorded fractionally">
##INFO=<ID=PAO,Number=A,Type=Float,Description="Alternate allele observations, with partial observations recorded fractionally">
##INFO=<ID=QR,Number=1,Type=Integer,Description="Reference allele quality sum in phred">
##INFO=<ID=QA,Number=A,Type=Integer,Description="Alternate allele quality sum in phred">
##INFO=<ID=PQR,Number=1,Type=Float,Description="Reference allele quality sum in phred for partial observations">
##INFO=<ID=PQA,Number=A,Type=Float,Description="Alternate allele quality sum in phred for partial observations">
##INFO=<ID=SRF,Number=1,Type=Integer,Description="Number of reference observations on the forward strand">
##INFO=<ID=SRR,Number=1,Type=Integer,Description="Number of reference observations on the reverse strand">
##INFO=<ID=SAF,Number=A,Type=Integer,Description="Number of alternate observations on the forward strand">
##INFO=<ID=SAR,Number=A,Type=Integer,Description="Number of alternate observations on the reverse strand">
##INFO=<ID=SRP,Number=1,Type=Float,Description="Strand balance probability for the reference allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SRF and SRR given E(SRF/SRR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=SAP,Number=A,Type=Float,Description="Strand balance probability for the alternate allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SAF and SAR given E(SAF/SAR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=AB,Number=A,Type=Float,Description="Allele balance at heterozygous sites: a number between 0 and 1 representing the ratio of reads showing the reference allele to all reads, considering only reads from individuals called as heterozygous">
##INFO=<ID=ABP,Number=A,Type=Float,Description="Allele balance probability at heterozygous sites: Phred-scaled upper-bounds estimate of the probability of observing the deviation between ABR and ABA given E(ABR/ABA) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=RUN,Number=A,Type=Integer,Description="Run length: the number of consecutive repeats of the alternate allele in the reference genome">
##INFO=<ID=RPP,Number=A,Type=Float,Description="Read Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=RPPR,Number=1,Type=Float,Description="Read Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=RPL,Number=A,Type=Float,Description="Reads Placed Left: number of reads supporting the alternate balanced to the left (5') of the alternate allele">
##INFO=<ID=RPR,Number=A,Type=Float,Description="Reads Placed Right: number of reads supporting the alternate balanced to the right (3') of the alternate allele">
##INFO=<ID=EPP,Number=A,Type=Float,Description="End Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=EPPR,Number=1,Type=Float,Description="End Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=DPRA,Number=A,Type=Float,Description="Alternate allele depth ratio.  Ratio between depth in samples with each called alternate allele and those without.">
##INFO=<ID=ODDS,Number=1,Type=Float,Description="The log odds ratio of the best genotype combination to the second-best.">
##INFO=<ID=GTI,Number=1,Type=Integer,Description="Number of genotyping iterations required to reach convergence or bailout.">
##INFO=<ID=TYPE,Number=A,Type=String,Description="The type of allele, either snp, mnp, ins, del, or complex.">
##INFO=<ID=CIGAR,Number=A,Type=String,Description="The extended CIGAR representation of each alternate allele, with the exception that '=' is replaced by 'M' to ease VCF parsing.  Note that INDEL alleles do not have the first matched base (which is provided by default, per the spec) referred to by the CIGAR.">
##INFO=<ID=NUMALT,Number=1,Type=Integer,Description="Number of unique non-reference alleles in called genotypes at this position.">
##INFO=<ID=MEANALT,Number=A,Type=Float,Description="Mean number of unique non-reference allele observations per sample with the corresponding alternate alleles.">
##INFO=<ID=LEN,Number=A,Type=Integer,Description="allele length">
##INFO=<ID=MQM,Number=A,Type=Float,Description="Mean mapping quality of observed alternate alleles">
##INFO=<ID=MQMR,Number=1,Type=Float,Description="Mean mapping quality of observed reference alleles">
##INFO=<ID=PAIRED,Number=A,Type=Float,Description="Proportion of observed alternate alleles which are supported by properly paired read fragments">
##INFO=<ID=PAIREDR,Number=1,Type=Float,Description="Proportion of observed reference alleles which are supported by properly paired read fragments">
##INFO=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
##INFO=<ID=END,Number=1,Type=Integer,Description="Last position (inclusive) in gVCF output record.">
##INFO=<ID=technology.ILLUMINA,Number=A,Type=Float,Description="Fraction of observations supporting the alternate observed in reads from ILLUMINA">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype">
##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood, log10-scaled likelihoods of the data given the called genotype for each possible genotype generated from the reference and alternate alleles given the sample ploidy">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Number of observation for each allele">
##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count">
##FORMAT=<ID=QR,Number=1,Type=Integer,Description="Sum of quality of the reference observations">
##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count">
##FORMAT=<ID=QA,Number=A,Type=Integer,Description="Sum of quality of the alternate observations">
##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	SRR8073662
NC_002945.4	1057	.	A	G	1991.37	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=78;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=4.01252;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=112.736;PAIRED=0.961538;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2256;QR=0;RO=0;RPL=41;RPP=3.45573;RPPR=0;RPR=37;RUN=1;SAF=47;SAP=10.1372;SAR=31;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:80:0,78:0:0:78:2256:-203.125,-23.4803,0
NC_002945.4	4480	.	T	C	1266.94	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=48;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=71.1473;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1446;QR=0;RO=0;RPL=26;RPP=3.73412;RPPR=0;RPR=22;RUN=1;SAF=24;SAP=3.0103;SAR=24;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:49:0,48:0:0:48:1446:-130.232,-14.4494,0
NC_002945.4	8741	.	T	C	1656.81	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=68;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=44.396;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=98.8732;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1927;QR=0;RO=0;RPL=35;RPP=3.13803;RPPR=0;RPR=33;RUN=1;SAF=41;SAP=9.26925;SAR=27;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:68:0,68:0:0:68:1927:-173.649,-20.47,0
NC_002945.4	29061	.	C	T	1418.86	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=55;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=3.36563;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=59.8909;MQMR=0;NS=1;NUMALT=1;ODDS=80.8514;PAIRED=0.854545;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1614;QR=0;RO=0;RPL=22;RPP=7.78754;RPPR=0;RPR=33;RUN=1;SAF=29;SAP=3.36563;SAR=26;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:56:0,55:0:0:55:1614:-145.339,-16.5567,0
NC_002945.4	29470	.	N	.	.	.	.	GT	./.
NC_002945.4	29471	.	N	.	.	.	.	GT	./.
NC_002945.4	29472	.	N	.	.	.	.	GT	./.
NC_002945.4	29473	.	N	.	.	.	.	GT	./.
NC_002945.4	29474	.	N	.	.	.	.	GT	./.
NC_002945.4	29475	.	N	.	.	.	.	GT	./.
NC_002945.4	29476	.	N	.	.	.	.	GT	./.
NC_002945.4	29477	.	N	.	.	.	.	GT	./.
NC_002945.4	29478	.	N	.	.	.	.	GT	./.
NC_002945.4	29479	.	N	.	.	.	.	GT	./.
NC_002945.4	29480	.	N	.	.	.	.	GT	./.
NC_002945.4	29481	.	N	.	.	.	.	GT	./.
NC_002945.4	29482	.	N	.	.	.	.	GT	./.
NC_002945.4	29483	.	N	.	.	.	.	GT	./.
NC_002945.4	29484	.	N	.	.	.	.	GT	./.
NC_002945.4	29485	.	N	.	.	.	.	GT	./.
NC_002945.4	29486	.	N	.	.	.	.	GT	./.
NC_002945.4	29487	.	N	.	.	.	.	GT	./.
NC_002945.4	29488	.	N	.	.	.	.	GT	./.
NC_002945.4	29489	.	N	.	.	.	.	GT	./.
NC_002945.4	29490	.	N	.	.	.	.	GT	./.
NC_002945.4	29491	.	N	.	.	.	.	GT	./.
NC_002945.4	29492	.	N	.	.	.	.	GT	./.
NC_002945.4	29493	.	N	.	.	.	.	GT	./.
NC_002945.4	29494	.	N	.	.	.	.	GT	./.
NC_002945.4	29495	.	N	.	.	.	.	GT	./.
NC_002945.4	29496	.	N	.	.	.	.	GT	./.
NC_002945.4	29497	.	N	.	.	.	.	GT	./.
NC_002945.4	29498	.	N	.	.	.	.	GT	./.
NC_002945.4	29499	.	N	.	.	.	.	GT	./.
NC_002945.4	29500	.	N	.	.	.	.	GT	./.
NC_002945.4	29501	.	N	.	.	.	.	GT	./.
NC_002945.4	29502	.	N	.	.	.	.	GT	./.
NC_002945.4	29503	.	N	.	.	.	.	GT	./.
NC_002945.4	29504	.	N	.	.	.	.	GT	./.
NC_002945.4	29505	.	N	.	.	.	.	GT	./.
NC_002945.4	29506	.	N	.	.	.	.	GT	./.
NC_002945.4	29507	.	N	.	.	.	.	GT	./.
NC_002945.4	29508	.	N	.	.	.	.	GT	./.
NC_002945.4	29509	.	N	.	.	.	.	GT	./.
NC_002945.4	29510	.	N	.	.	.	.	GT	./.
NC_002945.4	29511	.	N	.	.	.	.	GT	./.
NC_002945.4	29512	.	N	.	.	.	.	GT	./.
NC_002945.4	29513	.	N	.	.	.	.	GT	./.
NC_002945.4	29514	.	N	.	.	.	.	GT	./.
NC_002945.4	29515	.	N	.	.	.	.	GT	./.
NC_002945.4	29516	.	N	.	.	.	.	GT	./.
NC_002945.4	29517	.	N	.	.	.	.	GT	./.
NC_002945.4	29518	.	N	.	.	.	.	GT	./.
NC_002945.4	29519	.	N	.	.	.	.	GT	./.
NC_002945.4	29520	.	N	.	.	.	.	GT	./.
NC_002945.4	29521	.	N	.	.	.	.	GT	./.
NC_002945.4	29522	.	N	.	.	.	.	GT	./.
NC_002945.4	29523	.	N	.	.	.	.	GT	./.
NC_002945.4	29524	.	N	.	.	.	.	GT	./.
NC_002945.4	29525	.	N	.	.	.	.	GT	./.
NC_002945.4	29526	.	N	.	.	.	.	GT	./.
NC_002945.4	29527	.	N	.	.	.	.	GT	./.
NC_002945.4	29528	.	N	.	.	.	.	GT	./.
NC_002945.4	29529	.	N	.	.	.	.	GT	./.
NC_002945.4	29530	.	N	.	.	.	.	GT	./.
NC_002945.4	29531	.	N	.	.	.	.	GT	./.
NC_002945.4	29532	.	N	.	.	.	.	GT	./.
NC_002945.4	29533	.	N	.	.	.	.	GT	./.
NC_002945.4	29534	.	N	.	.	.	.	GT	./.
NC_002945.4	29535	.	N	.	.	.	.	GT	./.
NC_002945.4	29536	.	N	.	.	.	.	GT	./.
NC_002945.4	29537	.	N	.	.	.	.	GT	./.
NC_002945.4	29538	.	N	.	.	.	.	GT	./.
NC_002945.4	29539	.	N	.	.	.	.	GT	./.
NC_002945.4	29540	.	N	.	.	.	.	GT	./.
NC_002945.4	29541	.	N	.	.	.	.	GT	./.
NC_002945.4	29542	.	N	.	.	.	.	GT	./.
NC_002945.4	29543	.	N	.	.	.	.	GT	./.
NC_002945.4	29544	.	N	.	.	.	.	GT	./.
NC_002945.4	29545	.	N	.	.	.	.	GT	./.
NC_002945.4	29546	.	N	.	.	.	.	GT	./.
NC_002945.4	29547	.	N	.	.	.	.	GT	./.
NC_002945.4	29548	.	N	.	.	.	.	GT	./.
NC_002945.4	29549	.	N	.	.	.	.	GT	./.
NC_002945.4	29550	.	N	.	.	.	.	GT	./.
NC_002945.4	29551	.	N	.	.	.	.	GT	./.
NC_002945.4	29552	.	N	.	.	.	.	GT	./.
NC_002945.4	29553	.	N	.	.	.	.	GT	./.
NC_002945.4	29554	.	N	.	.	.	.	GT	./.
NC_002945.4	29555	.	N	.	.	.	.	GT	./.
NC_002945.4	29556	.	N	.	.	.	.	GT	./.
NC_002945.4	29557	.	N	.	.	.	.	GT	./.
NC_002945.4	29558	.	N	.	.	.	.	GT	./.
NC_002945.4	29559	.	N	.	.	.	.	GT	./.
NC_002945.4	29560	.	N	.	.	.	.	GT	./.
NC_002945.4	29561	.	N	.	.	.	.	GT	./.
NC_002945.4	29562	.	N	.	.	.	.	GT	./.
NC_002945.4	29563	.	N	.	.	.	.	GT	./.
NC_002945.4	29564	.	N	.	.	.	.	GT	./.
NC_002945.4	29565	.	N	.	.	.	.	GT	./.
NC_002945.4	29566	.	N	.	.	.	.	GT	./.
NC_002945.4	29567	.	N	.	.	.	.	GT	./.
NC_002945.4	29568	.	N	.	.	.	.	GT	./.
NC_002945.4	29569	.	N	.	.	.	.	GT	./.
NC_002945.4	29570	.	N	.	.	.	.	GT	./.
NC_002945.4	29571	.	N	.	.	.	.	GT	./.
NC_002945.4	29572	.	N	.	.	.	.	GT	./.
NC_002945.4	29573	.	N	.	.	.	.	GT	./.
NC_002945.4	29574	.	N	.	.	.	.	GT	./.
NC_002945.4	29575	.	N	.	.	.	.	GT	./.
NC_002945.4	29576	.	N	.	.	.	.	GT	./.
NC_002945.4	29577	.	N	.	.	.	.	GT	./.
NC_002945.4	29578	.	N	.	.	.	.	GT	./.
NC_002945.4	29579	.	N	.	.	.	.	GT	./.
NC_002945.4	29580	.	N	.	.	.	.	GT	./.
NC_002945.4	29581	.	N	.	.	.	.	GT	./.
NC_002945.4	29582	.	N	.	.	.	.	GT	./.
NC_002945.4	29583	.	N	.	.	.	.	GT	./.
NC_002945.4	29584	.	N	.	.	.	.	GT	./.
NC_002945.4	29585	.	N	.	.	.	.	GT	./.
NC_002945.4	29586	.	N	.	.	.	.	GT	./.
NC_002945.4	29587	.	N	.	.	.	.	GT	./.
NC_002945.4	29588	.	N	.	.	.	.	GT	./.
NC_002945.4	29589	.	N	.	.	.	.	GT	./.
NC_002945.4	29590	.	N	.	.	.	.	GT	./.
NC_002945.4	29591	.	N	.	.	.	.	GT	./.
NC_002945.4	29592	.	N	.	.	.	.	GT	./.
NC_002945.4	29593	.	N	.	.	.	.	GT	./.
NC_002945.4	29594	.	N	.	.	.	.	GT	./.
NC_002945.4	29595	.	N	.	.	.	.	GT	./.
NC_002945.4	29596	.	N	.	.	.	.	GT	./.
NC_002945.4	29597	.	N	.	.	.	.	GT	./.
NC_002945.4	29598	.	N	.	.	.	.	GT	./.
NC_002945.4	29599	.	N	.	.	.	.	GT	./.
NC_002945.4	29600	.	N	.	.	.	.	GT	./.
NC_002945.4	29601	.	N	.	.	.	.	GT	./.
NC_002945.4	29602	.	N	.	.	.	.	GT	./.
NC_002945.4	29603	.	N	.	.	.	.	GT	./.
NC_002945.4	29604	.	N	.	.	.	.	GT	./.
NC_002945.4	29605	.	N	.	.	.	.	GT	./.
NC_002945.4	29606	.	N	.	.	.	.	GT	./.
NC_002945.4	29607	.	N	.	.	.	.	GT	./.
NC_002945.4	29608	.	N	.	.	.	.	GT	./.
NC_002945.4	29609	.	N	.	.	.	.	GT	./.
NC_002945.4	29610	.	N	.	.	.	.	GT	./.
NC_002945.4	29611	.	N	.	.	.	.	GT	./.
NC_002945.4	29612	.	N	.	.	.	.	GT	./.
NC_002945.4	29613	.	N	.	.	.	.	GT	./.
NC_002945.4	29614	.	N	.	.	.	.	GT	./.
NC_002945.4	29615	.	N	.	.	.	.	GT	./.
NC_002945.4	29616	.	N	.	.	.	.	GT	./.
NC_002945.4	29617	.	N	.	.	.	.	GT	./.
NC_002945.4	29618	.	N	.	.	.	.	GT	./.
NC_002945.4	29619	.	N	.	.	.	.	GT	./.
NC_002945.4	29620	.	N	.	.	.	.	GT	./.
NC_002945.4	29621	.	N	.	.	.	.	GT	./.
NC_002945.4	29622	.	N	.	.	.	.	GT	./.
NC_002945.4	29623	.	N	.	.	.	.	GT	./.
NC_002945.4	29624	.	N	.	.	.	.	GT	./.
NC_002945.4	29625	.	N	.	.	.	.	GT	./.
NC_002945.4	29626	.	N	.	.	.	.	GT	./.
NC_002945.4	29627	.	N	.	.	.	.	GT	./.
NC_002945.4	29628	.	N	.	.	.	.	GT	./.
NC_002945.4	29629	.	N	.	.	.	.	GT	./.
NC_002945.4	29630	.	N	.	.	.	.	GT	./.
NC_002945.4	29631	.	N	.	.	.	.	GT	./.
NC_002945.4	29632	.	N	.	.	.	.	GT	./.
NC_002945.4	29633	.	N	.	.	.	.	GT	./.
NC_002945.4	29634	.	N	.	.	.	.	GT	./.
NC_002945.4	29635	.	N	.	.	.	.	GT	./.
NC_002945.4	29636	.	N	.	.	.	.	GT	./.
NC_002945.4	29637	.	N	.	.	.	.	GT	./.
NC_002945.4	29638	.	N	.	.	.	.	GT	./.
NC_002945.4	29639	.	N	.	.	.	.	GT	./.
NC_002945.4	29640	.	N	.	.	.	.	GT	./.
NC_002945.4	29641	.	N	.	.	.	.	GT	./.
NC_002945.4	29642	.	N	.	.	.	.	GT	./.
NC_002945.4	29643	.	N	.	.	.	.	GT	./.
NC_002945.4	29644	.	N	.	.	.	.	GT	./.
NC_002945.4	29645	.	N	.	.	.	.	GT	./.
NC_002945.4	29646	.	N	.	.	.	.	GT	./.
NC_002945.4	29647	.	N	.	.	.	.	GT	./.
NC_002945.4	29648	.	N	.	.	.	.	GT	./.
NC_002945.4	29649	.	N	.	.	.	.	GT	./.
NC_002945.4	29650	.	N	.	.	.	.	GT	./.
NC_002945.4	29651	.	N	.	.	.	.	GT	./.
NC_002945.4	29652	.	N	.	.	.	.	GT	./.
NC_002945.4	29653	.	N	.	.	.	.	GT	./.
NC_002945.4	29654	.	N	.	.	.	.	GT	./.
NC_002945.4	29655	.	N	.	.	.	.	GT	./.
NC_002945.4	29656	.	N	.	.	.	.	GT	./.
NC_002945.4	29657	.	N	.	.	.	.	GT	./.
NC_002945.4	29658	.	N	.	.	.	.	GT	./.
NC_002945.4	29659	.	N	.	.	.	.	GT	./.
NC_002945.4	29660	.	N	.	.	.	.	GT	./.
NC_002945.4	29661	.	N	.	.	.	.	GT	./.
NC_002945.4	29662	.	N	.	.	.	.	GT	./.
NC_002945.4	29663	.	N	.	.	.	.	GT	./.
NC_002945.4	29664	.	N	.	.	.	.	GT	./.
NC_002945.4	29665	.	N	.	.	.	.	GT	./.
NC_002945.4	29666	.	N	.	.	.	.	GT	./.
NC_002945.4	29667	.	N	.	.	.	.	GT	./.
NC_002945.4	29668	.	N	.	.	.	.	GT	./.
NC_002945.4	29669	.	N	.	.	.	.	GT	./.
NC_002945.4	29670	.	N	.	.	.	.	GT	./.
NC_002945.4	29671	.	N	.	.	.	.	GT	./.
NC_002945.4	29672	.	N	.	.	.	.	GT	./.
NC_002945.4	29673	.	N	.	.	.	.	GT	./.
NC_002945.4	29674	.	N	.	.	.	.	GT	./.
NC_002945.4	29675	.	N	.	.	.	.	GT	./.
NC_002945.4	29676	.	N	.	.	.	.	GT	./.
NC_002945.4	29677	.	N	.	.	.	.	GT	./.
NC_002945.4	29678	.	N	.	.	.	.	GT	./.
NC_002945.4	29679	.	N	.	.	.	.	GT	./.
NC_002945.4	29680	.	N	.	.	.	.	GT	./.
NC_002945.4	29681	.	N	.	.	.	.	GT	./.
NC_002945.4	29682	.	N	.	.	.	.	GT	./.
NC_002945.4	29683	.	N	.	.	.	.	GT	./.
NC_002945.4	29684	.	N	.	.	.	.	GT	./.
NC_002945.4	29685	.	N	.	.	.	.	GT	./.
NC_002945.4	29686	.	N	.	.	.	.	GT	./.
NC_002945.4	29687	.	N	.	.	.	.	GT	./.
NC_002945.4	29688	.	N	.	.	.	.	GT	./.
NC_002945.4	29689	.	N	.	.	.	.	GT	./.
NC_002945.4	29690	.	N	.	.	.	.	GT	./.
NC_002945.4	29691	.	N	.	.	.	.	GT	./.
NC_002945.4	29692	.	N	.	.	.	.	GT	./.
NC_002945.4	29693	.	N	.	.	.	.	GT	./.
NC_002945.4	29694	.	N	.	.	.	.	GT	./.
NC_002945.4	29695	.	N	.	.	.	.	GT	./.
NC_002945.4	29696	.	N	.	.	.	.	GT	./.
NC_002945.4	29697	.	N	.	.	.	.	GT	./.
NC_002945.4	29698	.	N	.	.	.	.	GT	./.
NC_002945.4	29699	.	N	.	.	.	.	GT	./.
NC_002945.4	29700	.	N	.	.	.	.	GT	./.
NC_002945.4	29701	.	N	.	.	.	.	GT	./.
NC_002945.4	29702	.	N	.	.	.	.	GT	./.
NC_002945.4	29703	.	N	.	.	.	.	GT	./.
NC_002945.4	29704	.	N	.	.	.	.	GT	./.
NC_002945.4	29705	.	N	.	.	.	.	GT	./.
NC_002945.4	29706	.	N	.	.	.	.	GT	./.
NC_002945.4	29707	.	N	.	.	.	.	GT	./.
NC_002945.4	29708	.	N	.	.	.	.	GT	./.
NC_002945.4	29709	.	N	.	.	.	.	GT	./.
NC_002945.4	29710	.	N	.	.	.	.	GT	./.
NC_002945.4	29711	.	N	.	.	.	.	GT	./.
NC_002945.4	29712	.	N	.	.	.	.	GT	./.
NC_002945.4	29713	.	N	.	.	.	.	GT	./.
NC_002945.4	29714	.	N	.	.	.	.	GT	./.
NC_002945.4	29715	.	N	.	.	.	.	GT	./.
NC_002945.4	29716	.	N	.	.	.	.	GT	./.
NC_002945.4	29717	.	N	.	.	.	.	GT	./.
NC_002945.4	29718	.	N	.	.	.	.	GT	./.
NC_002945.4	29719	.	N	.	.	.	.	GT	./.
NC_002945.4	29720	.	N	.	.	.	.	GT	./.
NC_002945.4	29721	.	N	.	.	.	.	GT	./.
NC_002945.4	29722	.	N	.	.	.	.	GT	./.
NC_002945.4	29723	.	N	.	.	.	.	GT	./.
NC_002945.4	29724	.	N	.	.	.	.	GT	./.
NC_002945.4	29725	.	N	.	.	.	.	GT	./.
NC_002945.4	29726	.	N	.	.	.	.	GT	./.
NC_002945.4	29727	.	N	.	.	.	.	GT	./.
NC_002945.4	29728	.	N	.	.	.	.	GT	./.
NC_002945.4	29729	.	N	.	.	.	.	GT	./.
NC_002945.4	29730	.	N	.	.	.	.	GT	./.
NC_002945.4	29731	.	N	.	.	.	.	GT	./.
NC_002945.4	29732	.	N	.	.	.	.	GT	./.
NC_002945.4	29733	.	N	.	.	.	.	GT	./.
NC_002945.4	29734	.	N	.	.	.	.	GT	./.
NC_002945.4	29735	.	N	.	.	.	.	GT	./.
NC_002945.4	29736	.	N	.	.	.	.	GT	./.
NC_002945.4	29737	.	N	.	.	.	.	GT	./.
NC_002945.4	29738	.	N	.	.	.	.	GT	./.
NC_002945.4	29739	.	N	.	.	.	.	GT	./.
NC_002945.4	29740	.	N	.	.	.	.	GT	./.
NC_002945.4	29741	.	N	.	.	.	.	GT	./.
NC_002945.4	29742	.	N	.	.	.	.	GT	./.
NC_002945.4	29743	.	N	.	.	.	.	GT	./.
NC_002945.4	29744	.	N	.	.	.	.	GT	./.
NC_002945.4	29745	.	N	.	.	.	.	GT	./.
NC_002945.4	29746	.	N	.	.	.	.	GT	./.
NC_002945.4	29747	.	N	.	.	.	.	GT	./.
NC_002945.4	29748	.	N	.	.	.	.	GT	./.
NC_002945.4	29749	.	N	.	.	.	.	GT	./.
NC_002945.4	29750	.	N	.	.	.	.	GT	./.
NC_002945.4	29751	.	N	.	.	.	.	GT	./.
NC_002945.4	29752	.	N	.	.	.	.	GT	./.
NC_002945.4	29753	.	N	.	.	.	.	GT	./.
NC_002945.4	29754	.	N	.	.	.	.	GT	./.
NC_002945.4	29755	.	N	.	.	.	.	GT	./.
NC_002945.4	29756	.	N	.	.	.	.	GT	./.
NC_002945.4	29757	.	N	.	.	.	.	GT	./.
NC_002945.4	29758	.	N	.	.	.	.	GT	./.
NC_002945.4	29759	.	N	.	.	.	.	GT	./.
NC_002945.4	29760	.	N	.	.	.	.	GT	./.
NC_002945.4	29761	.	N	.	.	.	.	GT	./.
NC_002945.4	29762	.	N	.	.	.	.	GT	./.
NC_002945.4	29763	.	N	.	.	.	.	GT	./.
NC_002945.4	29764	.	N	.	.	.	.	GT	./.
NC_002945.4	29765	.	N	.	.	.	.	GT	./.
NC_002945.4	29766	.	N	.	.	.	.	GT	./.
NC_002945.4	29767	.	N	.	.	.	.	GT	./.
NC_002945.4	29768	.	N	.	.	.	.	GT	./.
NC_002945.4	29769	.	N	.	.	.	.	GT	./.
NC_002945.4	29770	.	N	.	.	.	.	GT	./.
NC_002945.4	29771	.	N	.	.	.	.	GT	./.
NC_002945.4	29772	.	N	.	.	.	.	GT	./.
NC_002945.4	29773	.	N	.	.	.	.	GT	./.
NC_002945.4	29774	.	N	.	.	.	.	GT	./.
NC_002945.4	29775	.	N	.	.	.	.	GT	./.
NC_002945.4	29776	.	N	.	.	.	.	GT	./.
NC_002945.4	29777	.	N	.	.	.	.	GT	./.
NC_002945.4	29778	.	N	.	.	.	.	GT	./.
NC_002945.4	29779	.	N	.	.	.	.	GT	./.
NC_002945.4	29780	.	N	.	.	.	.	GT	./.
NC_002945.4	29781	.	N	.	.	.	.	GT	./.
NC_002945.4	29782	.	N	.	.	.	.	GT	./.
NC_002945.4	29783	.	N	.	.	.	.	GT	./.
NC_002945.4	29784	.	N	.	.	.	.	GT	./.
NC_002945.4	29785	.	N	.	.	.	.	GT	./.
NC_002945.4	29786	.	N	.	.	.	.	GT	./.
NC_002945.4	29787	.	N	.	.	.	.	GT	./.
NC_002945.4	29788	.	N	.	.	.	.	GT	./.
NC_002945.4	29789	.	N	.	.	.	.	GT	./.
NC_002945.4	29790	.	N	.	.	.	.	GT	./.
NC_002945.4	29791	.	N	.	.	.	.	GT	./.
NC_002945.4	29792	.	N	.	.	.	.	GT	./.
NC_002945.4	29793	.	N	.	.	.	.	GT	./.
NC_002945.4	29794	.	N	.	.	.	.	GT	./.
NC_002945.4	29795	.	N	.	.	.	.	GT	./.
NC_002945.4	29796	.	N	.	.	.	.	GT	./.
NC_002945.4	29797	.	N	.	.	.	.	GT	./.
NC_002945.4	29798	.	N	.	.	.	.	GT	./.
NC_002945.4	29799	.	N	.	.	.	.	GT	./.
NC_002945.4	29800	.	N	.	.	.	.	GT	./.
NC_002945.4	29801	.	N	.	.	.	.	GT	./.
NC_002945.4	29802	.	N	.	.	.	.	GT	./.
NC_002945.4	29803	.	N	.	.	.	.	GT	./.
NC_002945.4	29804	.	N	.	.	.	.	GT	./.
NC_002945.4	29805	.	N	.	.	.	.	GT	./.
NC_002945.4	29806	.	N	.	.	.	.	GT	./.
NC_002945.4	29807	.	N	.	.	.	.	GT	./.
NC_002945.4	29808	.	N	.	.	.	.	GT	./.
NC_002945.4	29809	.	N	.	.	.	.	GT	./.
NC_002945.4	29810	.	N	.	.	.	.	GT	./.
NC_002945.4	29811	.	N	.	.	.	.	GT	./.
NC_002945.4	29812	.	N	.	.	.	.	GT	./.
NC_002945.4	29813	.	N	.	.	.	.	GT	./.
NC_002945.4	29814	.	N	.	.	.	.	GT	./.
NC_002945.4	29815	.	N	.	.	.	.	GT	./.
NC_002945.4	29816	.	N	.	.	.	.	GT	./.
NC_002945.4	29817	.	N	.	.	.	.	GT	./.
NC_002945.4	29818	.	N	.	.	.	.	GT	./.
NC_002945.4	29819	.	N	.	.	.	.	GT	./.
NC_002945.4	29820	.	N	.	.	.	.	GT	./.
NC_002945.4	29821	.	N	.	.	.	.	GT	./.
NC_002945.4	29822	.	N	.	.	.	.	GT	./.
NC_002945.4	29823	.	N	.	.	.	.	GT	./.
NC_002945.4	29824	.	N	.	.	.	.	GT	./.
NC_002945.4	29825	.	N	.	.	.	.	GT	./.
NC_002945.4	29826	.	N	.	.	.	.	GT	./.
NC_002945.4	29827	.	N	.	.	.	.	GT	./.
NC_002945.4	29828	.	N	.	.	.	.	GT	./.
NC_002945.4	29829	.	N	.	.	.	.	GT	./.
NC_002945.4	29830	.	N	.	.	.	.	GT	./.
NC_002945.4	29831	.	N	.	.	.	.	GT	./.
NC_002945.4	29832	.	N	.	.	.	.	GT	./.
NC_002945.4	29833	.	N	.	.	.	.	GT	./.
NC_002945.4	29834	.	N	.	.	.	.	GT	./.
NC_002945.4	29835	.	N	.	.	.	.	GT	./.
NC_002945.4	29836	.	N	.	.	.	.	GT	./.
NC_002945.4	29837	.	N	.	.	.	.	GT	./.
NC_002945.4	29838	.	N	.	.	.	.	GT	./.
NC_002945.4	29839	.	N	.	.	.	.	GT	./.
NC_002945.4	29840	.	N	.	.	.	.	GT	./.
NC_002945.4	29841	.	N	.	.	.	.	GT	./.
NC_002945.4	29842	.	N	.	.	.	.	GT	./.
NC_002945.4	29843	.	N	.	.	.	.	GT	./.
NC_002945.4	29844	.	N	.	.	.	.	GT	./.
NC_002945.4	29845	.	N	.	.	.	.	GT	./.
NC_002945.4	29846	.	N	.	.	.	.	GT	./.
NC_002945.4	29847	.	N	.	.	.	.	GT	./.
NC_002945.4	29848	.	N	.	.	.	.	GT	./.
NC_002945.4	29849	.	N	.	.	.	.	GT	./.
NC_002945.4	29850	.	N	.	.	.	.	GT	./.
NC_002945.4	29851	.	N	.	.	.	.	GT	./.
NC_002945.4	29852	.	N	.	.	.	.	GT	./.
NC_002945.4	29853	.	N	.	.	.	.	GT	./.
NC_002945.4	29854	.	N	.	.	.	.	GT	./.
NC_002945.4	29855	.	N	.	.	.	.	GT	./.
NC_002945.4	29856	.	N	.	.	.	.	GT	./.
NC_002945.4	29857	.	N	.	.	.	.	GT	./.
NC_002945.4	29858	.	N	.	.	.	.	GT	./.
NC_002945.4	29859	.	N	.	.	.	.	GT	./.
NC_002945.4	29860	.	N	.	.	.	.	GT	./.
NC_002945.4	29861	.	N	.	.	.	.	GT	./.
NC_002945.4	29862	.	N	.	.	.	.	GT	./.
NC_002945.4	29863	.	N	.	.	.	.	GT	./.
NC_002945.4	29864	.	N	.	.	.	.	GT	./.
NC_002945.4	29865	.	N	.	.	.	.	GT	./.
NC_002945.4	29866	.	N	.	.	.	.	GT	./.
NC_002945.4	29867	.	N	.	.	.	.	GT	./.
NC_002945.4	29868	.	N	.	.	.	.	GT	./.
NC_002945.4	29869	.	N	.	.	.	.	GT	./.
NC_002945.4	29870	.	N	.	.	.	.	GT	./.
NC_002945.4	29871	.	N	.	.	.	.	GT	./.
NC_002945.4	29872	.	N	.	.	.	.	GT	./.
NC_002945.4	29873	.	N	.	.	.	.	GT	./.
NC_002945.4	29874	.	N	.	.	.	.	GT	./.
NC_002945.4	29875	.	N	.	.	.	.	GT	./.
NC_002945.4	29876	.	N	.	.	.	.	GT	./.
NC_002945.4	29877	.	N	.	.	.	.	GT	./.
NC_002945.4	29878	.	N	.	.	.	.	GT	./.
NC_002945.4	29879	.	N	.	.	.	.	GT	./.
NC_002945.4	29880	.	N	.	.	.	.	GT	./.
NC_002945.4	29881	.	N	.	.	.	.	GT	./.
NC_002945.4	29882	.	N	.	.	.	.	GT	./.
NC_002945.4	29883	.	N	.	.	.	.	GT	./.
NC_002945.4	29884	.	N	.	.	.	.	GT	./.
NC_002945.4	29885	.	N	.	.	.	.	GT	./.
NC_002945.4	29886	.	N	.	.	.	.	GT	./.
NC_002945.4	29887	.	N	.	.	.	.	GT	./.
NC_002945.4	29888	.	N	.	.	.	.	GT	./.
NC_002945.4	29889	.	N	.	.	.	.	GT	./.
NC_002945.4	29890	.	N	.	.	.	.	GT	./.
NC_002945.4	29891	.	N	.	.	.	.	GT	./.
NC_002945.4	29892	.	N	.	.	.	.	GT	./.
NC_002945.4	29893	.	N	.	.	.	.	GT	./.
NC_002945.4	29894	.	N	.	.	.	.	GT	./.
NC_002945.4	29895	.	N	.	.	.	.	GT	./.
NC_002945.4	29896	.	N	.	.	.	.	GT	./.
NC_002945.4	29897	.	N	.	.	.	.	GT	./.
NC_002945.4	29898	.	N	.	.	.	.	GT	./.
NC_002945.4	29899	.	N	.	.	.	.	GT	./.
NC_002945.4	29900	.	N	.	.	.	.	GT	./.
NC_002945.4	29901	.	N	.	.	.	.	GT	./.
NC_002945.4	29902	.	N	.	.	.	.	GT	./.
NC_002945.4	29903	.	N	.	.	.	.	GT	./.
NC_002945.4	29904	.	N	.	.	.	.	GT	./.
NC_002945.4	29905	.	N	.	.	.	.	GT	./.
NC_002945.4	29906	.	N	.	.	.	.	GT	./.
NC_002945.4	29907	.	N	.	.	.	.	GT	./.
NC_002945.4	29908	.	N	.	.	.	.	GT	./.
NC_002945.4	29909	.	N	.	.	.	.	GT	./.
NC_002945.4	29910	.	N	.	.	.	.	GT	./.
NC_002945.4	29911	.	N	.	.	.	.	GT	./.
NC_002945.4	29912	.	N	.	.	.	.	GT	./.
NC_002945.4	29913	.	N	.	.	.	.	GT	./.
NC_002945.4	29914	.	N	.	.	.	.	GT	./.
NC_002945.4	29915	.	N	.	.	.	.	GT	./.
NC_002945.4	29916	.	N	.	.	.	.	GT	./.
NC_002945.4	29917	.	N	.	.	.	.	GT	./.
NC_002945.4	29918	.	N	.	.	.	.	GT	./.
NC_002945.4	29919	.	N	.	.	.	.	GT	./.
NC_002945.4	29920	.	N	.	.	.	.	GT	./.
NC_002945.4	29921	.	N	.	.	.	.	GT	./.
NC_002945.4	29922	.	N	.	.	.	.	GT	./.
NC_002945.4	29923	.	N	.	.	.	.	GT	./.
NC_002945.4	29924	.	N	.	.	.	.	GT	./.
NC_002945.4	29925	.	N	.	.	.	.	GT	./.
NC_002945.4	29926	.	N	.	.	.	.	GT	./.
NC_002945.4	29927	.	N	.	.	.	.	GT	./.
NC_002945.4	29928	.	N	.	.	.	.	GT	./.
NC_002945.4	29929	.	N	.	.	.	.	GT	./.
NC_002945.4	29930	.	N	.	.	.	.	GT	./.
NC_002945.4	29931	.	N	.	.	.	.	GT	./.
NC_002945.4	29932	.	N	.	.	.	.	GT	./.
NC_002945.4	29933	.	N	.	.	.	.	GT	./.
NC_002945.4	29934	.	N	.	.	.	.	GT	./.
NC_002945.4	29935	.	N	.	.	.	.	GT	./.
NC_002945.4	29936	.	N	.	.	.	.	GT	./.
NC_002945.4	29937	.	N	.	.	.	.	GT	./.
NC_002945.4	29938	.	N	.	.	.	.	GT	./.
NC_002945.4	29939	.	N	.	.	.	.	GT	./.
NC_002945.4	29940	.	N	.	.	.	.	GT	./.
NC_002945.4	29941	.	N	.	.	.	.	GT	./.
NC_002945.4	29942	.	N	.	.	.	.	GT	./.
NC_002945.4	29943	.	N	.	.	.	.	GT	./.
NC_002945.4	29944	.	N	.	.	.	.	GT	./.
NC_002945.4	29945	.	N	.	.	.	.	GT	./.
NC_002945.4	29946	.	N	.	.	.	.	GT	./.
NC_002945.4	29947	.	N	.	.	.	.	GT	./.
NC_002945.4	29948	.	N	.	.	.	.	GT	./.
NC_002945.4	29949	.	N	.	.	.	.	GT	./.
NC_002945.4	29950	.	N	.	.	.	.	GT	./.
NC_002945.4	29951	.	N	.	.	.	.	GT	./.
NC_002945.4	29952	.	N	.	.	.	.	GT	./.
NC_002945.4	29953	.	N	.	.	.	.	GT	./.
NC_002945.4	29954	.	N	.	.	.	.	GT	./.
NC_002945.4	29955	.	N	.	.	.	.	GT	./.
NC_002945.4	29956	.	N	.	.	.	.	GT	./.
NC_002945.4	29957	.	N	.	.	.	.	GT	./.
NC_002945.4	29958	.	N	.	.	.	.	GT	./.
NC_002945.4	29959	.	N	.	.	.	.	GT	./.
NC_002945.4	29960	.	N	.	.	.	.	GT	./.
NC_002945.4	29961	.	N	.	.	.	.	GT	./.
NC_002945.4	29962	.	N	.	.	.	.	GT	./.
NC_002945.4	29963	.	N	.	.	.	.	GT	./.
NC_002945.4	29964	.	N	.	.	.	.	GT	./.
NC_002945.4	29965	.	N	.	.	.	.	GT	./.
NC_002945.4	29966	.	N	.	.	.	.	GT	./.
NC_002945.4	29967	.	N	.	.	.	.	GT	./.
NC_002945.4	29968	.	N	.	.	.	.	GT	./.
NC_002945.4	29969	.	N	.	.	.	.	GT	./.
NC_002945.4	29970	.	N	.	.	.	.	GT	./.
NC_002945.4	29971	.	N	.	.	.	.	GT	./.
NC_002945.4	29972	.	N	.	.	.	.	GT	./.
NC_002945.4	29973	.	N	.	.	.	.	GT	./.
NC_002945.4	29974	.	N	.	.	.	.	GT	./.
NC_002945.4	29975	.	N	.	.	.	.	GT	./.
NC_002945.4	29976	.	N	.	.	.	.	GT	./.
NC_002945.4	29977	.	N	.	.	.	.	GT	./.
NC_002945.4	29978	.	N	.	.	.	.	GT	./.
NC_002945.4	29979	.	N	.	.	.	.	GT	./.
NC_002945.4	29980	.	N	.	.	.	.	GT	./.
NC_002945.4	29981	.	N	.	.	.	.	GT	./.
NC_002945.4	29982	.	N	.	.	.	.	GT	./.
NC_002945.4	29983	.	N	.	.	.	.	GT	./.
NC_002945.4	29984	.	N	.	.	.	.	GT	./.
NC_002945.4	29985	.	N	.	.	.	.	GT	./.
NC_002945.4	29986	.	N	.	.	.	.	GT	./.
NC_002945.4	29987	.	N	.	.	.	.	GT	./.
NC_002945.4	29988	.	N	.	.	.	.	GT	./.
NC_002945.4	29989	.	N	.	.	.	.	GT	./.
NC_002945.4	29990	.	N	.	.	.	.	GT	./.
NC_002945.4	29991	.	N	.	.	.	.	GT	./.
NC_002945.4	29992	.	N	.	.	.	.	GT	./.
NC_002945.4	29993	.	N	.	.	.	.	GT	./.
NC_002945.4	29994	.	N	.	.	.	.	GT	./.
NC_002945.4	29995	.	N	.	.	.	.	GT	./.
NC_002945.4	29996	.	N	.	.	.	.	GT	./.
NC_002945.4	29997	.	N	.	.	.	.	GT	./.
NC_002945.4	29998	.	N	.	.	.	.	GT	./.
NC_002945.4	29999	.	N	.	.	.	.	GT	./.
NC_002945.4	30000	.	N	.	.	.	.	GT	./.
NC_002945.4	30001	.	N	.	.	.	.	GT	./.
NC_002945.4	30002	.	N	.	.	.	.	GT	./.
NC_002945.4	30003	.	N	.	.	.	.	GT	./.
NC_002945.4	30004	.	N	.	.	.	.	GT	./.
NC_002945.4	30005	.	N	.	.	.	.	GT	./.
NC_002945.4	30006	.	N	.	.	.	.	GT	./.
NC_002945.4	30007	.	N	.	.	.	.	GT	./.
NC_002945.4	30008	.	N	.	.	.	.	GT	./.
NC_002945.4	30009	.	N	.	.	.	.	GT	./.
NC_002945.4	30010	.	N	.	.	.	.	GT	./.
NC_002945.4	30011	.	N	.	.	.	.	GT	./.
NC_002945.4	30012	.	N	.	.	.	.	GT	./.
NC_002945.4	30013	.	N	.	.	.	.	GT	./.
NC_002945.4	30014	.	N	.	.	.	.	GT	./.
NC_002945.4	30015	.	N	.	.	.	.	GT	./.
NC_002945.4	30016	.	N	.	.	.	.	GT	./.
NC_002945.4	30017	.	N	.	.	.	.	GT	./.
NC_002945.4	30018	.	N	.	.	.	.	GT	./.
NC_002945.4	30019	.	N	.	.	.	.	GT	./.
NC_002945.4	30020	.	N	.	.	.	.	GT	./.
NC_002945.4	30021	.	N	.	.	.	.	GT	./.
NC_002945.4	30022	.	N	.	.	.	.	GT	./.
NC_002945.4	30023	.	N	.	.	.	.	GT	./.
NC_002945.4	30024	.	N	.	.	.	.	GT	./.
NC_002945.4	30025	.	N	.	.	.	.	GT	./.
NC_002945.4	30026	.	N	.	.	.	.	GT	./.
NC_002945.4	30027	.	N	.	.	.	.	GT	./.
NC_002945.4	30028	.	N	.	.	.	.	GT	./.
NC_002945.4	30029	.	N	.	.	.	.	GT	./.
NC_002945.4	30030	.	N	.	.	.	.	GT	./.
NC_002945.4	30031	.	N	.	.	.	.	GT	./.
NC_002945.4	30032	.	N	.	.	.	.	GT	./.
NC_002945.4	30033	.	N	.	.	.	.	GT	./.
NC_002945.4	30034	.	N	.	.	.	.	GT	./.
NC_002945.4	30035	.	N	.	.	.	.	GT	./.
NC_002945.4	30036	.	N	.	.	.	.	GT	./.
NC_002945.4	30037	.	N	.	.	.	.	GT	./.
NC_002945.4	30038	.	N	.	.	.	.	GT	./.
NC_002945.4	30039	.	N	.	.	.	.	GT	./.
NC_002945.4	30040	.	N	.	.	.	.	GT	./.
NC_002945.4	30041	.	N	.	.	.	.	GT	./.
NC_002945.4	30042	.	N	.	.	.	.	GT	./.
NC_002945.4	30043	.	N	.	.	.	.	GT	./.
NC_002945.4	30044	.	N	.	.	.	.	GT	./.
NC_002945.4	30045	.	N	.	.	.	.	GT	./.
NC_002945.4	30046	.	N	.	.	.	.	GT	./.
NC_002945.4	30047	.	N	.	.	.	.	GT	./.
NC_002945.4	30048	.	N	.	.	.	.	GT	./.
NC_002945.4	30049	.	N	.	.	.	.	GT	./.
NC_002945.4	30050	.	N	.	.	.	.	GT	./.
NC_002945.4	30051	.	N	.	.	.	.	GT	./.
NC_002945.4	30052	.	N	.	.	.	.	GT	./.
NC_002945.4	30053	.	N	.	.	.	.	GT	./.
NC_002945.4	30054	.	N	.	.	.	.	GT	./.
NC_002945.4	30055	.	N	.	.	.	.	GT	./.
NC_002945.4	30056	.	N	.	.	.	.	GT	./.
NC_002945.4	30057	.	N	.	.	.	.	GT	./.
NC_002945.4	30058	.	N	.	.	.	.	GT	./.
NC_002945.4	30059	.	N	.	.	.	.	GT	./.
NC_002945.4	30060	.	N	.	.	.	.	GT	./.
NC_002945.4	30061	.	N	.	.	.	.	GT	./.
NC_002945.4	30062	.	N	.	.	.	.	GT	./.
NC_002945.4	30063	.	N	.	.	.	.	GT	./.
NC_002945.4	30064	.	N	.	.	.	.	GT	./.
NC_002945.4	30065	.	N	.	.	.	.	GT	./.
NC_002945.4	30066	.	N	.	.	.	.	GT	./.
NC_002945.4	30067	.	N	.	.	.	.	GT	./.
NC_002945.4	30068	.	N	.	.	.	.	GT	./.
NC_002945.4	30069	.	N	.	.	.	.	GT	./.
NC_002945.4	30070	.	N	.	.	.	.	GT	./.
NC_002945.4	30071	.	N	.	.	.	.	GT	./.
NC_002945.4	30072	.	N	.	.	.	.	GT	./.
NC_002945.4	30073	.	N	.	.	.	.	GT	./.
NC_002945.4	30074	.	N	.	.	.	.	GT	./.
NC_002945.4	30075	.	N	.	.	.	.	GT	./.
NC_002945.4	30076	.	N	.	.	.	.	GT	./.
NC_002945.4	30077	.	N	.	.	.	.	GT	./.
NC_002945.4	30078	.	N	.	.	.	.	GT	./.
NC_002945.4	30079	.	N	.	.	.	.	GT	./.
NC_002945.4	30080	.	N	.	.	.	.	GT	./.
NC_002945.4	30081	.	N	.	.	.	.	GT	./.
NC_002945.4	30082	.	N	.	.	.	.	GT	./.
NC_002945.4	33788	.	A	G	1024.83	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=40;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=3.22745;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=60.0569;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1290;QR=0;RO=0;RPL=21;RPP=3.22745;RPPR=0;RPR=19;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40:0:0:40:1290:-116.37,-12.0412,0
NC_002945.4	41228	.	A	C	1797.65	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=61;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=3.0459;EPPR=9.52472;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=79.4731;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2059;QR=44;RO=3;RPL=38;RPP=11.0198;RPPR=9.52472;RPR=23;RUN=1;SAF=37;SAP=9.02635;SAR=24;SRF=0;SRP=9.52472;SRR=3;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:64:3,61:3:44:61:2059:-181.429,-15.1593,0
NC_002945.4	41437	.	T	C	1685.38	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=61;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=3.90025;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=89.1691;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1906;QR=0;RO=0;RPL=32;RPP=3.33068;RPPR=0;RPR=29;RUN=1;SAF=31;SAP=3.0459;SAR=30;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:62:0,61:0:0:61:1906:-171.638,-18.3628,0
NC_002945.4	50470	.	C	T	1433.48	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=50;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=3.70517;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=73.9199;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1628;QR=0;RO=0;RPL=27;RPP=3.70517;RPPR=0;RPR=23;RUN=1;SAF=20;SAP=7.35324;SAR=30;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:50:0,50:0:0:50:1628:-146.762,-15.0515,0
NC_002945.4	59861	.	A	G	1400.02	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=50;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=3.70517;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=73.9199;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1593;QR=0;RO=0;RPL=29;RPP=5.78978;RPPR=0;RPR=21;RUN=1;SAF=30;SAP=7.35324;SAR=20;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:50:0,50:0:0:50:1593:-143.621,-15.0515,0
NC_002945.4	69913	.	T	C	2316.87	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=83;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=8.89682;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=119.668;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2614;QR=0;RO=0;RPL=40;RPP=3.24576;RPPR=0;RPR=43;RUN=1;SAF=42;SAP=3.03646;SAR=41;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:83:0,83:0:0:83:2614:-235.474,-24.9855,0
NC_002945.4	70082	.	G	A	2349.87	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=84;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=3.1137;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=121.054;PAIRED=0.988095;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2659;QR=0;RO=0;RPL=51;RPP=11.386;RPPR=0;RPR=33;RUN=1;SAF=36;SAP=6.73282;SAR=48;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:88:0,84:0:0:84:2659:-239.385,-25.2865,0
NC_002945.4	70438	.	A	G	2173.01	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=77;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=6.42261;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=111.35;PAIRED=0.987013;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2457;QR=0;RO=0;RPL=33;RPP=6.42261;RPPR=0;RPR=44;RUN=1;SAF=34;SAP=5.29458;SAR=43;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:77:0,77:0:0:77:2457:-221.331,-23.1793,0
NC_002945.4	79918	.	G	A	1704.06	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=57;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=7.61992;EPPR=7.35324;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=76.0369;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1944;QR=26;RO=2;RPL=30;RPP=3.35316;RPPR=3.0103;RPR=27;RUN=1;SAF=26;SAP=3.9627;SAR=31;SRF=1;SRP=3.0103;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:59:2,57:2:26:57:1944:-172.719,-15.2908,0
NC_002945.4	96244	.	G	A	946.318	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=38;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=8.7247;EPPR=7.35324;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=50.7755;PAIRED=1;PAIREDR=0.5;PAO=0;PQA=0;PQR=0;PRO=0;QA=1116;QR=31;RO=2;RPL=12;RPP=14.2105;RPPR=7.35324;RPR=26;RUN=1;SAF=24;SAP=8.7247;SAR=14;SRF=0;SRP=7.35324;SRR=2;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:2,38:2:31:38:1116:-97.7397,-9.09623,0
NC_002945.4	103811	.	C	G	554.906	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=23;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=7.63648;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=50.7391;MQMR=0;NS=1;NUMALT=1;ODDS=36.4899;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=724;QR=0;RO=0;RPL=13;RPP=3.86001;RPPR=0;RPR=10;RUN=1;SAF=6;SAP=14.4341;SAR=17;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:724:-59.5087,-6.92369,0
NC_002945.4	103813	.	A	G	606.4209999999999	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=23;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=7.63648;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=50.7391;MQMR=0;NS=1;NUMALT=1;ODDS=36.4899;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=784;QR=0;RO=0;RPL=13;RPP=3.86001;RPPR=0;RPR=10;RUN=1;SAF=6;SAP=14.4341;SAR=17;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:784:-64.6602,-6.92369,0
NC_002945.4	103814	.	C	G	586.81	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=23;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=10.6577;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=50.7391;MQMR=0;NS=1;NUMALT=1;ODDS=36.4899;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=768;QR=0;RO=0;RPL=14;RPP=5.3706;RPPR=0;RPR=9;RUN=1;SAF=6;SAP=14.4341;SAR=17;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:768:-63.1462,-6.92369,0
NC_002945.4	110198	.	C	T	2695.05	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=91;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=3.60686;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=130.758;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3034;QR=0;RO=0;RPL=44;RPP=3.22506;RPPR=0;RPR=47;RUN=1;SAF=50;SAP=4.94315;SAR=41;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:94:0,91:0:0:91:3034:-273.013,-27.3937,0
NC_002945.4	114965	.	C	T	1722.74	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=59;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=9.23028;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=86.3965;PAIRED=0.983051;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1959;QR=0;RO=0;RPL=23;RPP=9.23028;RPPR=0;RPR=36;RUN=1;SAF=27;SAP=3.93042;SAR=32;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:59:0,59:0:0:59:1959:-176.553,-17.7608,0
NC_002945.4	117800	.	C	G	1957.8	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=72;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=17.6074;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=100.831;PAIRED=0.972222;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2227;QR=12;RO=1;RPL=36;RPP=3.0103;RPPR=5.18177;RPR=36;RUN=1;SAF=37;SAP=3.13094;SAR=35;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:73:1,72:1:12:72:2227:-199.435,-20.7752,0
NC_002945.4	127447	.	G	C	1892.36	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=70;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=4.99565;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=101.646;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2137;QR=0;RO=0;RPL=36;RPP=3.13438;RPPR=0;RPR=34;RUN=1;SAF=33;SAP=3.50664;SAR=37;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:70:0,70:0:0:70:2137:-192.56,-21.0721,0
NC_002945.4	130166	.	C	T	1493.38	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=52;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=3.17734;EPPR=7.35324;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=69.1691;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1708;QR=28;RO=2;RPL=25;RPP=3.17734;RPPR=3.0103;RPR=27;RUN=1;SAF=30;SAP=5.68288;SAR=22;SRF=1;SRP=3.0103;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:55:2,52:2:28:52:1708:-151.305,-13.7356,0
NC_002945.4	130237	.	T	C	1891.76	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=63;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=3.32051;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=91.9417;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2145;QR=0;RO=0;RPL=24;RPP=10.7656;RPPR=0;RPR=39;RUN=1;SAF=35;SAP=4.69922;SAR=28;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:64:0,63:0:0:63:2145:-193.142,-18.9649,0
NC_002945.4	132052	.	N	.	.	.	.	GT	./.
NC_002945.4	132620	.	N	.	.	.	.	GT	./.
NC_002945.4	132621	.	N	.	.	.	.	GT	./.
NC_002945.4	132622	.	N	.	.	.	.	GT	./.
NC_002945.4	132623	.	N	.	.	.	.	GT	./.
NC_002945.4	132624	.	N	.	.	.	.	GT	./.
NC_002945.4	132625	.	N	.	.	.	.	GT	./.
NC_002945.4	132626	.	N	.	.	.	.	GT	./.
NC_002945.4	132627	.	N	.	.	.	.	GT	./.
NC_002945.4	132628	.	N	.	.	.	.	GT	./.
NC_002945.4	132629	.	N	.	.	.	.	GT	./.
NC_002945.4	132630	.	N	.	.	.	.	GT	./.
NC_002945.4	132631	.	N	.	.	.	.	GT	./.
NC_002945.4	132632	.	N	.	.	.	.	GT	./.
NC_002945.4	132633	.	N	.	.	.	.	GT	./.
NC_002945.4	132634	.	N	.	.	.	.	GT	./.
NC_002945.4	132635	.	N	.	.	.	.	GT	./.
NC_002945.4	132636	.	N	.	.	.	.	GT	./.
NC_002945.4	132637	.	N	.	.	.	.	GT	./.
NC_002945.4	132638	.	N	.	.	.	.	GT	./.
NC_002945.4	132639	.	N	.	.	.	.	GT	./.
NC_002945.4	132640	.	N	.	.	.	.	GT	./.
NC_002945.4	132641	.	N	.	.	.	.	GT	./.
NC_002945.4	132642	.	N	.	.	.	.	GT	./.
NC_002945.4	132643	.	N	.	.	.	.	GT	./.
NC_002945.4	132644	.	N	.	.	.	.	GT	./.
NC_002945.4	132645	.	N	.	.	.	.	GT	./.
NC_002945.4	132646	.	N	.	.	.	.	GT	./.
NC_002945.4	132647	.	N	.	.	.	.	GT	./.
NC_002945.4	132648	.	N	.	.	.	.	GT	./.
NC_002945.4	132649	.	N	.	.	.	.	GT	./.
NC_002945.4	132650	.	N	.	.	.	.	GT	./.
NC_002945.4	132651	.	N	.	.	.	.	GT	./.
NC_002945.4	132652	.	N	.	.	.	.	GT	./.
NC_002945.4	132653	.	N	.	.	.	.	GT	./.
NC_002945.4	132654	.	N	.	.	.	.	GT	./.
NC_002945.4	132655	.	N	.	.	.	.	GT	./.
NC_002945.4	132656	.	N	.	.	.	.	GT	./.
NC_002945.4	132657	.	N	.	.	.	.	GT	./.
NC_002945.4	132658	.	N	.	.	.	.	GT	./.
NC_002945.4	132659	.	N	.	.	.	.	GT	./.
NC_002945.4	132660	.	N	.	.	.	.	GT	./.
NC_002945.4	132661	.	N	.	.	.	.	GT	./.
NC_002945.4	132662	.	N	.	.	.	.	GT	./.
NC_002945.4	132663	.	N	.	.	.	.	GT	./.
NC_002945.4	132664	.	N	.	.	.	.	GT	./.
NC_002945.4	132665	.	N	.	.	.	.	GT	./.
NC_002945.4	132666	.	N	.	.	.	.	GT	./.
NC_002945.4	132667	.	N	.	.	.	.	GT	./.
NC_002945.4	132668	.	N	.	.	.	.	GT	./.
NC_002945.4	132669	.	N	.	.	.	.	GT	./.
NC_002945.4	132670	.	N	.	.	.	.	GT	./.
NC_002945.4	132671	.	N	.	.	.	.	GT	./.
NC_002945.4	132672	.	N	.	.	.	.	GT	./.
NC_002945.4	132673	.	N	.	.	.	.	GT	./.
NC_002945.4	132674	.	N	.	.	.	.	GT	./.
NC_002945.4	140686	.	A	G	2969.95	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=110;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=4.2737;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=157.098;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3362;QR=0;RO=0;RPL=71;RPP=23.2247;RPPR=0;RPR=39;RUN=1;SAF=52;SAP=3.72096;SAR=58;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:112:0,110:0:0:110:3362:-302.582,-33.1133,0
NC_002945.4	143799	.	T	C	2348.79	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=93;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=3.03365;EPPR=7.35324;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=124.333;PAIRED=0.989247;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2699;QR=37;RO=2;RPL=57;RPP=13.3073;RPPR=7.35324;RPR=36;RUN=1;SAF=31;SAP=25.4488;SAR=62;SRF=0;SRP=7.35324;SRR=2;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:97:2,93:2:37:93:2699:-239.615,-25.243,0
NC_002945.4	144992	.	G	A	1419.32	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=51;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=3.3935;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=75.3062;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1617;QR=0;RO=0;RPL=19;RPP=10.206;RPPR=0;RPR=32;RUN=1;SAF=28;SAP=4.07475;SAR=23;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:0,51:0:0:51:1617:-145.649,-15.3525,0
NC_002945.4	148871	.	G	A	2283.59	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=78;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=3.45573;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=59.9231;MQMR=0;NS=1;NUMALT=1;ODDS=112.736;PAIRED=0.974359;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2572;QR=0;RO=0;RPL=41;RPP=3.45573;RPPR=0;RPR=37;RUN=1;SAF=42;SAP=4.01252;SAR=36;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:78:0,78:0:0:78:2572:-231.682,-23.4803,0
NC_002945.4	149955	.	N	.	.	.	.	GT	./.
NC_002945.4	149956	.	N	.	.	.	.	GT	./.
NC_002945.4	149957	.	N	.	.	.	.	GT	./.
NC_002945.4	149958	.	N	.	.	.	.	GT	./.
NC_002945.4	149959	.	N	.	.	.	.	GT	./.
NC_002945.4	149960	.	N	.	.	.	.	GT	./.
NC_002945.4	149961	.	N	.	.	.	.	GT	./.
NC_002945.4	149962	.	N	.	.	.	.	GT	./.
NC_002945.4	149963	.	N	.	.	.	.	GT	./.
NC_002945.4	149964	.	N	.	.	.	.	GT	./.
NC_002945.4	149965	.	N	.	.	.	.	GT	./.
NC_002945.4	149966	.	N	.	.	.	.	GT	./.
NC_002945.4	149967	.	N	.	.	.	.	GT	./.
NC_002945.4	149968	.	N	.	.	.	.	GT	./.
NC_002945.4	149969	.	N	.	.	.	.	GT	./.
NC_002945.4	149970	.	N	.	.	.	.	GT	./.
NC_002945.4	149971	.	N	.	.	.	.	GT	./.
NC_002945.4	149972	.	N	.	.	.	.	GT	./.
NC_002945.4	149973	.	N	.	.	.	.	GT	./.
NC_002945.4	149974	.	N	.	.	.	.	GT	./.
NC_002945.4	149975	.	N	.	.	.	.	GT	./.
NC_002945.4	149976	.	N	.	.	.	.	GT	./.
NC_002945.4	149977	.	N	.	.	.	.	GT	./.
NC_002945.4	149978	.	N	.	.	.	.	GT	./.
NC_002945.4	149979	.	N	.	.	.	.	GT	./.
NC_002945.4	149980	.	N	.	.	.	.	GT	./.
NC_002945.4	149981	.	N	.	.	.	.	GT	./.
NC_002945.4	149982	.	N	.	.	.	.	GT	./.
NC_002945.4	149983	.	N	.	.	.	.	GT	./.
NC_002945.4	149984	.	N	.	.	.	.	GT	./.
NC_002945.4	149985	.	N	.	.	.	.	GT	./.
NC_002945.4	149986	.	N	.	.	.	.	GT	./.
NC_002945.4	149987	.	N	.	.	.	.	GT	./.
NC_002945.4	149988	.	N	.	.	.	.	GT	./.
NC_002945.4	149989	.	N	.	.	.	.	GT	./.
NC_002945.4	149990	.	N	.	.	.	.	GT	./.
NC_002945.4	149991	.	N	.	.	.	.	GT	./.
NC_002945.4	149992	.	N	.	.	.	.	GT	./.
NC_002945.4	149993	.	N	.	.	.	.	GT	./.
NC_002945.4	149994	.	N	.	.	.	.	GT	./.
NC_002945.4	149995	.	N	.	.	.	.	GT	./.
NC_002945.4	149996	.	N	.	.	.	.	GT	./.
NC_002945.4	149997	.	N	.	.	.	.	GT	./.
NC_002945.4	149998	.	N	.	.	.	.	GT	./.
NC_002945.4	149999	.	N	.	.	.	.	GT	./.
NC_002945.4	150000	.	N	.	.	.	.	GT	./.
NC_002945.4	150001	.	N	.	.	.	.	GT	./.
NC_002945.4	150002	.	N	.	.	.	.	GT	./.
NC_002945.4	150003	.	N	.	.	.	.	GT	./.
NC_002945.4	150004	.	N	.	.	.	.	GT	./.
NC_002945.4	150005	.	N	.	.	.	.	GT	./.
NC_002945.4	150006	.	N	.	.	.	.	GT	./.
NC_002945.4	150007	.	N	.	.	.	.	GT	./.
NC_002945.4	150008	.	N	.	.	.	.	GT	./.
NC_002945.4	150009	.	N	.	.	.	.	GT	./.
NC_002945.4	150010	.	N	.	.	.	.	GT	./.
NC_002945.4	150011	.	N	.	.	.	.	GT	./.
NC_002945.4	150012	.	N	.	.	.	.	GT	./.
NC_002945.4	150013	.	N	.	.	.	.	GT	./.
NC_002945.4	150014	.	N	.	.	.	.	GT	./.
NC_002945.4	150015	.	N	.	.	.	.	GT	./.
NC_002945.4	150016	.	N	.	.	.	.	GT	./.
NC_002945.4	150017	.	N	.	.	.	.	GT	./.
NC_002945.4	150018	.	N	.	.	.	.	GT	./.
NC_002945.4	150019	.	N	.	.	.	.	GT	./.
NC_002945.4	150020	.	N	.	.	.	.	GT	./.
NC_002945.4	150021	.	N	.	.	.	.	GT	./.
NC_002945.4	150022	.	N	.	.	.	.	GT	./.
NC_002945.4	150023	.	N	.	.	.	.	GT	./.
NC_002945.4	150024	.	N	.	.	.	.	GT	./.
NC_002945.4	150025	.	N	.	.	.	.	GT	./.
NC_002945.4	150026	.	N	.	.	.	.	GT	./.
NC_002945.4	150027	.	N	.	.	.	.	GT	./.
NC_002945.4	150028	.	N	.	.	.	.	GT	./.
NC_002945.4	150029	.	N	.	.	.	.	GT	./.
NC_002945.4	150030	.	N	.	.	.	.	GT	./.
NC_002945.4	150031	.	N	.	.	.	.	GT	./.
NC_002945.4	150032	.	N	.	.	.	.	GT	./.
NC_002945.4	150033	.	N	.	.	.	.	GT	./.
NC_002945.4	150034	.	N	.	.	.	.	GT	./.
NC_002945.4	150035	.	N	.	.	.	.	GT	./.
NC_002945.4	150036	.	N	.	.	.	.	GT	./.
NC_002945.4	150037	.	N	.	.	.	.	GT	./.
NC_002945.4	150038	.	N	.	.	.	.	GT	./.
NC_002945.4	150039	.	N	.	.	.	.	GT	./.
NC_002945.4	150040	.	N	.	.	.	.	GT	./.
NC_002945.4	150041	.	N	.	.	.	.	GT	./.
NC_002945.4	150042	.	N	.	.	.	.	GT	./.
NC_002945.4	150043	.	N	.	.	.	.	GT	./.
NC_002945.4	150044	.	N	.	.	.	.	GT	./.
NC_002945.4	150045	.	N	.	.	.	.	GT	./.
NC_002945.4	150046	.	N	.	.	.	.	GT	./.
NC_002945.4	150047	.	N	.	.	.	.	GT	./.
NC_002945.4	150048	.	N	.	.	.	.	GT	./.
NC_002945.4	150049	.	N	.	.	.	.	GT	./.
NC_002945.4	150050	.	N	.	.	.	.	GT	./.
NC_002945.4	150051	.	N	.	.	.	.	GT	./.
NC_002945.4	150052	.	N	.	.	.	.	GT	./.
NC_002945.4	150053	.	N	.	.	.	.	GT	./.
NC_002945.4	150054	.	N	.	.	.	.	GT	./.
NC_002945.4	150055	.	N	.	.	.	.	GT	./.
NC_002945.4	150056	.	N	.	.	.	.	GT	./.
NC_002945.4	150057	.	N	.	.	.	.	GT	./.
NC_002945.4	150058	.	N	.	.	.	.	GT	./.
NC_002945.4	150059	.	N	.	.	.	.	GT	./.
NC_002945.4	150060	.	N	.	.	.	.	GT	./.
NC_002945.4	150061	.	N	.	.	.	.	GT	./.
NC_002945.4	150062	.	N	.	.	.	.	GT	./.
NC_002945.4	150063	.	N	.	.	.	.	GT	./.
NC_002945.4	150064	.	N	.	.	.	.	GT	./.
NC_002945.4	150065	.	N	.	.	.	.	GT	./.
NC_002945.4	150066	.	N	.	.	.	.	GT	./.
NC_002945.4	150067	.	N	.	.	.	.	GT	./.
NC_002945.4	150068	.	N	.	.	.	.	GT	./.
NC_002945.4	150069	.	N	.	.	.	.	GT	./.
NC_002945.4	150070	.	N	.	.	.	.	GT	./.
NC_002945.4	150071	.	N	.	.	.	.	GT	./.
NC_002945.4	150072	.	N	.	.	.	.	GT	./.
NC_002945.4	150073	.	N	.	.	.	.	GT	./.
NC_002945.4	150074	.	N	.	.	.	.	GT	./.
NC_002945.4	150075	.	N	.	.	.	.	GT	./.
NC_002945.4	150076	.	N	.	.	.	.	GT	./.
NC_002945.4	150077	.	N	.	.	.	.	GT	./.
NC_002945.4	150078	.	N	.	.	.	.	GT	./.
NC_002945.4	150079	.	N	.	.	.	.	GT	./.
NC_002945.4	150080	.	N	.	.	.	.	GT	./.
NC_002945.4	150081	.	N	.	.	.	.	GT	./.
NC_002945.4	150082	.	N	.	.	.	.	GT	./.
NC_002945.4	150083	.	N	.	.	.	.	GT	./.
NC_002945.4	150084	.	N	.	.	.	.	GT	./.
NC_002945.4	150085	.	N	.	.	.	.	GT	./.
NC_002945.4	150086	.	N	.	.	.	.	GT	./.
NC_002945.4	150087	.	N	.	.	.	.	GT	./.
NC_002945.4	150088	.	N	.	.	.	.	GT	./.
NC_002945.4	150089	.	N	.	.	.	.	GT	./.
NC_002945.4	150090	.	N	.	.	.	.	GT	./.
NC_002945.4	150091	.	N	.	.	.	.	GT	./.
NC_002945.4	150092	.	N	.	.	.	.	GT	./.
NC_002945.4	150093	.	N	.	.	.	.	GT	./.
NC_002945.4	150094	.	N	.	.	.	.	GT	./.
NC_002945.4	150095	.	N	.	.	.	.	GT	./.
NC_002945.4	150096	.	N	.	.	.	.	GT	./.
NC_002945.4	150097	.	N	.	.	.	.	GT	./.
NC_002945.4	150098	.	N	.	.	.	.	GT	./.
NC_002945.4	150099	.	N	.	.	.	.	GT	./.
NC_002945.4	150100	.	N	.	.	.	.	GT	./.
NC_002945.4	150101	.	N	.	.	.	.	GT	./.
NC_002945.4	150102	.	N	.	.	.	.	GT	./.
NC_002945.4	150103	.	N	.	.	.	.	GT	./.
NC_002945.4	150104	.	N	.	.	.	.	GT	./.
NC_002945.4	150105	.	N	.	.	.	.	GT	./.
NC_002945.4	150106	.	N	.	.	.	.	GT	./.
NC_002945.4	150107	.	N	.	.	.	.	GT	./.
NC_002945.4	150108	.	N	.	.	.	.	GT	./.
NC_002945.4	150109	.	N	.	.	.	.	GT	./.
NC_002945.4	150110	.	N	.	.	.	.	GT	./.
NC_002945.4	150111	.	N	.	.	.	.	GT	./.
NC_002945.4	150112	.	N	.	.	.	.	GT	./.
NC_002945.4	150113	.	N	.	.	.	.	GT	./.
NC_002945.4	150114	.	N	.	.	.	.	GT	./.
NC_002945.4	150115	.	N	.	.	.	.	GT	./.
NC_002945.4	150116	.	N	.	.	.	.	GT	./.
NC_002945.4	150117	.	N	.	.	.	.	GT	./.
NC_002945.4	150118	.	N	.	.	.	.	GT	./.
NC_002945.4	150119	.	N	.	.	.	.	GT	./.
NC_002945.4	150120	.	N	.	.	.	.	GT	./.
NC_002945.4	150121	.	N	.	.	.	.	GT	./.
NC_002945.4	150122	.	N	.	.	.	.	GT	./.
NC_002945.4	150123	.	N	.	.	.	.	GT	./.
NC_002945.4	150124	.	N	.	.	.	.	GT	./.
NC_002945.4	150125	.	N	.	.	.	.	GT	./.
NC_002945.4	150126	.	N	.	.	.	.	GT	./.
NC_002945.4	150127	.	N	.	.	.	.	GT	./.
NC_002945.4	150128	.	N	.	.	.	.	GT	./.
NC_002945.4	150129	.	N	.	.	.	.	GT	./.
NC_002945.4	150130	.	N	.	.	.	.	GT	./.
NC_002945.4	150131	.	N	.	.	.	.	GT	./.
NC_002945.4	150132	.	N	.	.	.	.	GT	./.
NC_002945.4	150133	.	N	.	.	.	.	GT	./.
NC_002945.4	150134	.	N	.	.	.	.	GT	./.
NC_002945.4	150135	.	N	.	.	.	.	GT	./.
NC_002945.4	150136	.	N	.	.	.	.	GT	./.
NC_002945.4	150137	.	N	.	.	.	.	GT	./.
NC_002945.4	150138	.	N	.	.	.	.	GT	./.
NC_002945.4	150139	.	N	.	.	.	.	GT	./.
NC_002945.4	150140	.	N	.	.	.	.	GT	./.
NC_002945.4	150141	.	N	.	.	.	.	GT	./.
NC_002945.4	150142	.	N	.	.	.	.	GT	./.
NC_002945.4	150143	.	N	.	.	.	.	GT	./.
NC_002945.4	151022	.	N	.	.	.	.	GT	./.
NC_002945.4	151023	.	N	.	.	.	.	GT	./.
NC_002945.4	151024	.	N	.	.	.	.	GT	./.
NC_002945.4	151025	.	N	.	.	.	.	GT	./.
NC_002945.4	151026	.	N	.	.	.	.	GT	./.
NC_002945.4	151027	.	N	.	.	.	.	GT	./.
NC_002945.4	151028	.	N	.	.	.	.	GT	./.
NC_002945.4	151029	.	N	.	.	.	.	GT	./.
NC_002945.4	151030	.	N	.	.	.	.	GT	./.
NC_002945.4	151031	.	N	.	.	.	.	GT	./.
NC_002945.4	151032	.	N	.	.	.	.	GT	./.
NC_002945.4	151033	.	N	.	.	.	.	GT	./.
NC_002945.4	151034	.	N	.	.	.	.	GT	./.
NC_002945.4	151035	.	N	.	.	.	.	GT	./.
NC_002945.4	151036	.	N	.	.	.	.	GT	./.
NC_002945.4	151037	.	N	.	.	.	.	GT	./.
NC_002945.4	151038	.	N	.	.	.	.	GT	./.
NC_002945.4	151039	.	N	.	.	.	.	GT	./.
NC_002945.4	151040	.	N	.	.	.	.	GT	./.
NC_002945.4	159370	.	A	G	1749.91	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=62;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=3.15039;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=90.5554;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1998;QR=0;RO=0;RPL=42;RPP=19.9618;RPPR=0;RPR=20;RUN=1;SAF=26;SAP=6.51267;SAR=36;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:62:0,62:0:0:62:1998:-180.043,-18.6639,0
NC_002945.4	160535	.	T	C	1804.25	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=74;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=3.12768;EPPR=7.35324;GTI=0;LEN=1;MEANALT=1;MQ=59.8649;MQMR=60;NS=1;NUMALT=1;ODDS=100.699;PAIRED=0.986486;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2050;QR=25;RO=2;RPL=41;RPP=4.88833;RPPR=7.35324;RPR=33;RUN=1;SAF=31;SAP=7.23587;SAR=43;SRF=2;SRP=7.35324;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:76:2,74:2:25:74:2050:-182.337,-20.5033,0
NC_002945.4	165799	.	G	A	1394.34	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=48;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=5.9056;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=71.1473;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1583;QR=0;RO=0;RPL=25;RPP=3.19126;RPPR=0;RPR=23;RUN=1;SAF=25;SAP=3.19126;SAR=23;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:51:0,48:0:0:48:1583:-142.577,-14.4494,0
NC_002945.4	166696	.	A	G	1822.75	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=67;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=3.30199;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=97.4869;PAIRED=0.985075;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2076;QR=0;RO=0;RPL=34;RPP=3.04271;RPPR=0;RPR=33;RUN=1;SAF=22;SAP=20.1552;SAR=45;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:67:0,67:0:0:67:2076:-187.068,-20.169,0
NC_002945.4	179885	.	G	A	1895.35	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=77;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=3.0385;EPPR=13.8677;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=98.8465;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2153;QR=60;RO=5;RPL=34;RPP=5.29458;RPPR=13.8677;RPR=43;RUN=1;SAF=41;SAP=3.71532;SAR=36;SRF=5;SRP=13.8677;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:82:5,77:5:60:77:2153:-188.447,-19.1645,0
NC_002945.4	189083	.	A	G	1178.55	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=46;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=12.2627;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=68.3747;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1359;QR=0;RO=0;RPL=17;RPP=9.80795;RPPR=0;RPR=29;RUN=1;SAF=27;SAP=6.03148;SAR=19;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46:0:0:46:1359:-122.54,-13.8474,0
NC_002945.4	192177	.	A	G	1304.14	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=46;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=15.095;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=68.3747;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1491;QR=0;RO=0;RPL=24;RPP=3.19912;RPPR=0;RPR=22;RUN=1;SAF=23;SAP=3.0103;SAR=23;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46:0:0:46:1491:-134.434,-13.8474,0
NC_002945.4	198890	.	T	G	1479.47	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=52;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=5.68288;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=76.6925;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1720;QR=0;RO=0;RPL=32;RPP=9.02361;RPPR=0;RPR=20;RUN=1;SAF=12;SAP=35.7494;SAR=40;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:0,52:0:0:52:1720:-155.06,-15.6536,0
NC_002945.4	223919	.	C	T	937.27	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=39;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=4.40227;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=55.9607;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1080;QR=12;RO=1;RPL=22;RPP=4.40227;RPPR=5.18177;RPR=17;RUN=1;SAF=24;SAP=7.52028;SAR=15;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:41:1,39:1:12:39:1080:-96.2285,-10.9612,0
NC_002945.4	228109	.	C	T	1608.55	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=61;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=7.31765;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=89.1691;PAIRED=0.983607;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1829;QR=0;RO=0;RPL=32;RPP=3.33068;RPPR=0;RPR=29;RUN=1;SAF=25;SAP=7.31765;SAR=36;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:62:0,61:0:0:61:1829:-164.716,-18.3628,0
NC_002945.4	230661	.	A	G	1378.76	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=49;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=6.59988;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=72.5336;PAIRED=0.959184;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1571;QR=0;RO=0;RPL=23;RPP=3.40914;RPPR=0;RPR=26;RUN=1;SAF=30;SAP=8.37251;SAR=19;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:49:0,49:0:0:49:1571:-141.635,-14.7505,0
NC_002945.4	232188	.	G	C	899.6439999999999	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=37;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=3.5385;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=55.8981;PAIRED=0.972973;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1041;QR=0;RO=0;RPL=22;RPP=5.88603;RPPR=0;RPR=15;RUN=1;SAF=12;SAP=12.9286;SAR=25;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,37:0:0:37:1041:-93.938,-11.1381,0
NC_002945.4	295519	.	T	C	1828.28	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=70;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=7.47733;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=97.1647;PAIRED=0.985714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2082;QR=16;RO=1;RPL=29;RPP=7.47733;RPPR=5.18177;RPR=41;RUN=1;SAF=32;SAP=4.12706;SAR=38;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:71:1,70:1:16:70:2082:-185.986,-19.7731,0
NC_002945.4	299636	.	A	G	2260.51	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=76;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=4.03889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=109.964;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2561;QR=0;RO=0;RPL=27;RPP=16.8392;RPPR=0;RPR=49;RUN=1;SAF=36;SAP=3.46745;SAR=40;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:76:0,76:0:0:76:2561:-230.702,-22.8783,0
NC_002945.4	304339	.	G	A	2005.61	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=74;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=3.47981;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=107.191;PAIRED=0.986486;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2271;QR=0;RO=0;RPL=45;RPP=10.5224;RPPR=0;RPR=29;RUN=1;SAF=38;SAP=3.12768;SAR=36;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:77:0,74:0:0:74:2271:-204.468,-22.2762,0
NC_002945.4	306688	.	N	.	.	.	.	GT	./.
NC_002945.4	306689	.	N	.	.	.	.	GT	./.
NC_002945.4	306690	.	N	.	.	.	.	GT	./.
NC_002945.4	306691	.	N	.	.	.	.	GT	./.
NC_002945.4	306692	.	N	.	.	.	.	GT	./.
NC_002945.4	306693	.	N	.	.	.	.	GT	./.
NC_002945.4	306694	.	N	.	.	.	.	GT	./.
NC_002945.4	306695	.	N	.	.	.	.	GT	./.
NC_002945.4	306696	.	N	.	.	.	.	GT	./.
NC_002945.4	306697	.	N	.	.	.	.	GT	./.
NC_002945.4	306698	.	N	.	.	.	.	GT	./.
NC_002945.4	306699	.	N	.	.	.	.	GT	./.
NC_002945.4	306700	.	N	.	.	.	.	GT	./.
NC_002945.4	306701	.	N	.	.	.	.	GT	./.
NC_002945.4	306702	.	N	.	.	.	.	GT	./.
NC_002945.4	306703	.	N	.	.	.	.	GT	./.
NC_002945.4	306704	.	N	.	.	.	.	GT	./.
NC_002945.4	306705	.	N	.	.	.	.	GT	./.
NC_002945.4	306706	.	N	.	.	.	.	GT	./.
NC_002945.4	306707	.	N	.	.	.	.	GT	./.
NC_002945.4	306708	.	N	.	.	.	.	GT	./.
NC_002945.4	306709	.	N	.	.	.	.	GT	./.
NC_002945.4	306710	.	N	.	.	.	.	GT	./.
NC_002945.4	319911	.	C	T	1185.93	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=43;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=3.0608;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=64.2158;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1346;QR=0;RO=0;RPL=20;RPP=3.46479;RPPR=0;RPR=23;RUN=1;SAF=22;SAP=3.0608;SAR=21;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43:0:0:43:1346:-121.399,-12.9443,0
NC_002945.4	332124	.	C	T	162.344	.	AB=0.7;ABP=6.48466;AC=1;AF=0.5;AN=2;AO=7;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=5.80219;EPPR=9.52472;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=12.1823;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=36;RO=3;RPL=7;RPP=18.2106;RPPR=9.52472;RPR=0;RUN=1;SAF=2;SAP=5.80219;SAR=5;SRF=3;SRP=9.52472;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:3,7:3:36:7:225:-17.552,0,-0.349682
NC_002945.4	332128	.	C	G	158.059	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=212;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:212:-19.3404,-2.40824,0
NC_002945.4	332144	.	C	T	23.1525	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=9.52472;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=5.3259;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=57;QR=12;RO=1;RPL=3;RPP=9.52472;RPPR=5.18177;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:1,3:1:12:3:57:-4.11919,-0.00412644,0
NC_002945.4	332145	.	G	T	43.4124	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.99598;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:86:-7.95356,-1.20412,0
NC_002945.4	332154	.	G	C	48.5003	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:3:0,3:0:0:3:81:-7.55923,-0.90309,0