Mercurial > repos > greg > vsnp_get_snps
changeset 13:cd636b0e4f95 draft
"planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_get_snps commit cab8ee43e902a3ae7b0fd6b06842c4b5c221af25"
| author | greg |
|---|---|
| date | Tue, 21 Sep 2021 00:21:36 +0000 |
| parents | 544b2ed99a9a |
| children | 44b84d32883c |
| files | vsnp_get_snps.xml |
| diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/vsnp_get_snps.xml Wed Aug 25 17:17:37 2021 +0000 +++ b/vsnp_get_snps.xml Tue Sep 21 00:21:36 2021 +0000 @@ -28,7 +28,7 @@ #if str($dbkey) == '?': #set dbkey = $i.metadata.dbkey #else if str($dbkey) != $i.metadata.dbkey: - >&2 echo "The dbkeys associated with the zero coverage VCF files with SNPs found in closely related isolate groups are not unique" && exit 1 + >&2 echo "The dbkeys associated with the zero coverage VCF files with SNPs found in closely related isolate groups are not unique, check ${i.name}" && exit 1 #end if #set vcf_identifier = re.sub('[^\s\w\-]', '_', str($i.element_identifier)) ln -s '${i}' '$input_vcf_dir/${vcf_identifier}' &&