Mercurial > repos > greg > vsnp_sample_names

changeset 4:67e3fa4bbc53 draft

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"planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_sample_names commit ff2ce94ece2147f04cf0f1964ed716012422d50f"
author greg
date Wed, 16 Jun 2021 17:06:16 +0000
parents fb3defef50e5
children b395250ac8b3
files .shed.yml test-data/BCG_Danish_Human_UK_SRR9596061 test-data/BCG_Danish_Human_UK_SRR9596061.fastq test-data/CMC_20E1_R1.fastq.gz test-data/CMC_20E1_R2.fastq.gz test-data/Dassie_Dassie_ZA_SRR3745455 test-data/Dassie_Dassie_ZA_SRR3745455.fastq test-data/Mbov_Cattle_NI_SRR10993937 test-data/Mbov_Cattle_NI_SRR10993937.fastq test-data/Mcap_Deer_DE_SRR650221.fastq.gz test-data/sample_names.txt
diffstat 11 files changed, 1 insertions(+), 42 deletions(-) [+]
line wrap: on
line diff
--- a/.shed.yml	Sun Jan 03 15:54:36 2021 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,11 +0,0 @@
-name: vsnp_sample_names
-owner: greg
-description: |
-  Contains a tool that outputs a unique portion of the input file name.
-homepage_url: https://github.com/USDA-VS/vSNP
-long_description: |
-  Contains a tool that outputs a unique portion of the input file name.
-remote_repository_url: https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_sample_names
-type: unrestricted
-categories:
-  - Sequence Analysis
--- a/test-data/BCG_Danish_Human_UK_SRR9596061	Sun Jan 03 15:54:36 2021 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,1 +0,0 @@
-BCG_Danish_Human_UK_SRR9596061
--- a/test-data/BCG_Danish_Human_UK_SRR9596061.fastq	Sun Jan 03 15:54:36 2021 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,14 +0,0 @@
-@SRR9596061.1 1 length=100
-GACCCCGGTTCAGGCTTCACCACAGTGTGGAACGCGGTCGTCTCCGAACTTAACGGCGACCCTAAGGTTGACGACGGACCCAGCAGTGATGCTAATCTCA
-+SRR9596061.1 1 length=100
-??<?BA@D8@F<F<;C?CFGAFAGI?@9:D<?B?@:A;';;1(=A=4;<;AC>AB>@B;755?<<>C:>?C@############################
-@SRR9596061.2 2 length=100
-GCTGAGATTAGCATCACTGCTGGGTCCGTCGTCAACCTTAGGGTCGCCGTTAAGTTCGGAGACGACCGCGTTCCACACTGTGGTGAAGCCTGAACCGGGG
-+SRR9596061.2 2 length=100
-?<<++A2=?ADDDEEI9A?>AECEA9CFEEEC??:BDIIEB9?9?@ACDA;;CCCDDD/;=<????;=?>;;034+>>>>AA93<>::A8>2<>A?>9;9
-@SRR9596061.3 3 length=100
-GCTCGATTTCGTTTTGGACAAAGCTGCTCGGCACGGATAACAGAGCAAAACCCTCGACGATGGTCAATGGCTTGACTAAATTGAGCCAAGCCATTTCGCG
-+SRR9596061.3 3 length=100
-????D?DDB<D<AAE?1+<+<F9FF3E<91?:)?D@((0.BC4)8@@CD).;@C=A############################################
-@SRR9596061.4 4 length=100
-GAACTTAACGGCGACCCTAAGGTTGACGACGGACCCAGCAGTGATGCTAATCTCAGCGCTCCGCTGACCCCTCAGCAAAGGGCTTGGCTCAATCTCGTCC
Binary file test-data/CMC_20E1_R1.fastq.gz has changed
Binary file test-data/CMC_20E1_R2.fastq.gz has changed
--- a/test-data/Dassie_Dassie_ZA_SRR3745455	Sun Jan 03 15:54:36 2021 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,1 +0,0 @@
-Dassie_Dassie_ZA_SRR3745455
--- a/test-data/Dassie_Dassie_ZA_SRR3745455.fastq	Sun Jan 03 15:54:36 2021 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,8 +0,0 @@
-@SRR3745455.1 1 length=251
-ATACAAGACCGAGCTGATCAAACCCGGCAAGCCCTGGCGGTCCATCGAGGATGTCGAGTTGGCCACCGCGCGCTGGGTCGACTGGTTCAACCATCGCCGCCTCTACCAGTACTGCGGCGACGTCCCGCCGGTCGAACTCGAGGCTGCCTACTACGCTCAACGCCAGAGACCAGCCGCCGGCTGAGGTCTCAGATCAGAGAGTCTCCGGACTCACCGGGGCGGTTCAGGTTGTGATTTGATCAGGCATGCCG
-+SRR3745455.1 1 length=251
-CCCBCFFFFFCCGGGGGGGGGGGFGGGGGGGHGHHAHHGGGGGHHGGHGGGHHHHHHGHFHGHGFGHGGGFFGGGCGHHGGGGGGHGHHHHHGHHGGFFGGGGGHHHHHHHHHHGGF?CCGGCGGGFGGGGGGFGFFFFDFFFFFFEFFFFFFBFFFFDFFBFFFFFFFBEFFFEBF=B;DCFFFFFBFFFFBFFFBFBFFFFFF0.-DDAFFFFF;--@DF99.00:;;/::0BFFFBFE00;/EFFFF-
-@SRR3745455.2 2 length=251
-GTCTTCGGTGCGGTAGCGCCGAATGTCCAACGGAGAGTGCAAAATACCATGAAGCTCATTCTCACGGCCGATGTCGATCACCTCGGGTCCATCGGCGACACTGTCGAGGTCAAGGACGGGTATGGCCGTAACTTTCTGCTCCCGCGCGGCCTGGCGATCGTCGCCTCGCGCGGAGCCCAGAAGCAGGCTGACGAGATCCGCCGGGCCCGCGAAACCAAAAGCGTACGCGACCTAGAGCACGCCAACGAGAT
-+SRR3745455.2 2 length=251
-AAAAAFAB>A?DGEEGGGGGFGGGHGHHFGFGGFGGGFFHFFHHHHHHFHHHHHHHFHFGHHHHHEGGGGGGGHHGFGHEGFFAF?CGGHFFFGGGGGCGGHFDGGCC/CHGHGFHHGGG@DHHFHHGGGGCHHHHHBGGHHGDGC?BCAGGEGGGGFEC9ADC?.ADFFFFFAFFFE?E./BBFFFDFFFEDFBFFF/;.;@@;ACFFF-=;-BFEEEFFFDF?--.;9-9AFBFB/BFFF.D>ED.9..
--- a/test-data/Mbov_Cattle_NI_SRR10993937	Sun Jan 03 15:54:36 2021 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,1 +0,0 @@
-Mbov_Cattle_NI_SRR10993937
--- a/test-data/Mbov_Cattle_NI_SRR10993937.fastq	Sun Jan 03 15:54:36 2021 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
-@M00963:204:000000000-B953L:1:1102:18443:7739 1:N:0:16
-GCACCTGAGATTGACACCGCCCGCGAATACGAAGTAACCGCCGAATACCAGTCCTGGCGGGCCGTCTAGGGAAGCGACGCAGCATTACTTACGGTCGGCGTCGGGATAGGCCCGGCCATCCCCCTCGGGTGGCTCACGTTAGCGAACCGGCACCCGGACAAACCTGGGGCGGCCGCGAACCCAGCCCCTGCGGGGCTAACAACACGGTCCGCGCCCACCGCCGCCCCCCCGTCAACCGAGCCAATACCACA
-+
-AAAAAFFFBFFFG11G11E1A0EGCGG?/1A//AFD2AAE/A/A>/FFGBCGHBFGHFGG////>/0/21?BGA///><</ACGDF1?111=<.0.------;---.;////.-:@--/9....-;@A@-@--9//;9--;9;---@-9-9-9--9--9---;9/9-------@-----;@-----;A--9---9-9-/;BB9-;9-9B-9-------------@----;-;A--/---9;@/-//99//;
-@M00963:204:000000000-B953L:1:1102:15355:7851 1:N:0:16
-GTTCGGCGCGCCGGTGGGTCCTGATCCGCTGGCGGGTTTCGTCAACGACAGCGGCCTGCGACCCCGATATCCCGCGATTGAGATCTACCGGGTGAGCGCGCCCGCCAACCCCGGGGCGCCCTACTTCGCCGCGACCGACCAGCTCGCCCGCGTCGACGGCGGACCCGAGGTCCTGCTGCGGCTGGACGAACGACGCCGGCTGCAGGGCCAGCCCCCCCTGGGGCCGGTGCTGATGACCGCGGACGCCCGAG
Binary file test-data/Mcap_Deer_DE_SRR650221.fastq.gz has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/sample_names.txt	Wed Jun 16 17:06:16 2021 +0000
@@ -0,0 +1,1 @@
+CMC_20E1