annotate test-data/vsnp_statistics.tabular @ 0:c21d338dbdc4 draft

Uploaded
author greg
date Tue, 21 Apr 2020 10:19:53 -0400 (2020-04-21)
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
1 Sample 13-1941-6
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
2 Reference 89
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
3 Read1 File 13-1941-6_S4_L001_R1_600000_fastq_gz
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
4 Read1 File Size 5.1 KB
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
5 Read1 Total Reads 25
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
6 Read1 Mean Read Length 230.6
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
7 Read1 Mean Read Quality 30.8
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
8 Read1 Reads Passing Q30 60.0%
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
9 Read2 File 13-1941-6_S4_L001_R2_600000_fastq_gz
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
10 Read2 File Size 5.6 KB
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
11 Read2 Total Reads 25
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
12 Read2 Mean Read Length 239.7
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
13 Read2 Mean Read Quality 22.2
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
14 Read2 Reads Passing Q30 4.0%
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
15 Total Reads 50
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
16 All Mapped Reads 45
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
17 Unmapped Reads 5
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
18 Unmapped Reads Percentage of Total 10.0%
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
19 Average Depth of Coverage 10.338671
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
20 Reference with Coverage 98.74%
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
21
c21d338dbdc4 Uploaded
greg
parents:
diff changeset
22 Good SNP Count 611