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author greg
date Thu, 30 Apr 2020 10:26:20 -0400
parents c21d338dbdc4
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1:14e29f7d59ca 2:7fe0cbb8c894
1 name: vsnp_statistics 1 name: vsnp_statistics
2 owner: greg 2 owner: greg
3 description: | 3 description: |
4 Contains a tool that outputs statistics on VCF files. 4 Contains a tool that produces an Excel spreadsheet containing statistics for samples and associated metrics files.
5 homepage_url: https://github.com/USDA-VS/vSNP 5 homepage_url: https://github.com/USDA-VS/vSNP
6 long_description: | 6 long_description: |
7 Contains a tool that outputs statistics on VCF files. 7 Contains a tool Accepts a single fastqsanger sample, a set of paired read samples, or a collections of samples
8 along with associated SAMtools idxstats and vSNP zero coverage metrics files and extracts information from them
9 to produce an Excel spreadsheet containing statistics for each sample.
8 remote_repository_url: https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_statistics 10 remote_repository_url: https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_statistics
9 type: unrestricted 11 type: unrestricted
10 categories: 12 categories:
11 - Sequence Analysis 13 - Sequence Analysis