comparison vsnp_statistics.xml @ 20:d4ef7003c539 draft

"planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_statistics commit a08a9977ae1ac36c46b9fb7898bd4b5c4c302c11"

19:ae006e01b0fa

    </tests>
    <help>
**What it does**

Accepts associated fastq files, SAMtools idxstats files and **vSNP: add zero coverage** metrics files and extracts information from them
to produce an Excel spreadsheet containing statistics for each sample.  The samples can be a single read, a single set of paired reads in
separate datasets or  collection of paired reads.  The output statistics include reference, file size, mean read length, mean read quality,
reads passing Q30, total reads, all mapped reads, unmapped reads, unmapped reads percentage of total, reference with coverage, average depth
of coverage and good SNP count.
    </help>
    <expand macro="citations"/>
</tool>

20:d4ef7003c539

    </tests>
    <help>
**What it does**

Accepts associated fastq files, SAMtools idxstats files and **vSNP: add zero coverage** metrics files and extracts information from them
to produce a tabular file containing statistics for each sample.  The samples can be a single read, a single set of paired reads in
separate datasets or a collection of paired reads.  The output statistics include reference, file size, mean read length, mean read quality,
reads passing Q30, total reads, all mapped reads, unmapped reads, unmapped reads percentage of total, reference with coverage, average depth
of coverage and good SNP count.
    </help>
    <expand macro="citations"/>
</tool>