Mercurial > repos > greg > vsnp_statistics

comparison vsnp_statistics.xml @ 28:e219f5c06dc0 draft default tip

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"planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_statistics commit fd6150d1cb5a9e50aa10694b9ac85cb575ed7525"
author greg
date Mon, 15 Nov 2021 23:24:03 +0000
parents b908bb18008a
children
comparison
equal deleted inserted replaced
27:c9208cc0f5dd 28:e219f5c06dc0
74 <test expect_num_outputs="1"> 74 <test expect_num_outputs="1">
75 <param name="input_type" value="single"/> 75 <param name="input_type" value="single"/>
76 <param name="read1" value="Mcap_Deer_DE_SRR650221.fastq.gz" ftype="fastqsanger.gz" dbkey="89"/> 76 <param name="read1" value="Mcap_Deer_DE_SRR650221.fastq.gz" ftype="fastqsanger.gz" dbkey="89"/>
77 <param name="samtools_idxstats" value="samtools_idxstats1.tabular" ftype="tabular" dbkey="89"/> 77 <param name="samtools_idxstats" value="samtools_idxstats1.tabular" ftype="tabular" dbkey="89"/>
78 <param name="vsnp_azc_metrics" value="add_zc_metrics1.tabular" ftype="tabular" dbkey="89"/> 78 <param name="vsnp_azc_metrics" value="add_zc_metrics1.tabular" ftype="tabular" dbkey="89"/>
79 <output name="output" file="vsnp_statistics1.tabular" ftype="tabular" compare="contains"/> 79 <output name="output" ftype="tabular">
80 <assert_contents>
81 <has_size value="332"/>
82 </assert_contents>
83 </output>
80 </test> 84 </test>
81 <!-- A set of paired fastq files --> 85 <!-- A set of paired fastq files -->
82 <test expect_num_outputs="1"> 86 <test expect_num_outputs="1">
83 <param name="input_type" value="pair"/> 87 <param name="input_type" value="pair"/>
84 <param name="read1" value="13-1941-6_S4_L001_R1_600000.fastq.gz" ftype="fastqsanger.gz" dbkey="89"/> 88 <param name="read1" value="13-1941-6_S4_L001_R1_600000.fastq.gz" ftype="fastqsanger.gz" dbkey="89"/>
85 <param name="read2" value="13-1941-6_S4_L001_R2_600000.fastq.gz" ftype="fastqsanger.gz" dbkey="89"/> 89 <param name="read2" value="13-1941-6_S4_L001_R2_600000.fastq.gz" ftype="fastqsanger.gz" dbkey="89"/>
86 <param name="samtools_idxstats" value="samtools_idxstats2.tabular" ftype="tabular" dbkey="89"/> 90 <param name="samtools_idxstats" value="samtools_idxstats2.tabular" ftype="tabular" dbkey="89"/>
87 <param name="vsnp_azc_metrics" value="add_zc_metrics2.tabular" ftype="tabular" dbkey="89"/> 91 <param name="vsnp_azc_metrics" value="add_zc_metrics2.tabular" ftype="tabular" dbkey="89"/>
88 <output name="output" file="vsnp_statistics2.tabular" ftype="tabular" compare="contains"/> 92 <output name="output" ftype="tabular">
93 <assert_contents>
94 <has_size value="500"/>
95 </assert_contents>
96 </output>
89 </test> 97 </test>
90 <!-- A collection of paired fastq files --> 98 <!-- A collection of paired fastq files -->
91 <test expect_num_outputs="1"> 99 <test expect_num_outputs="1">
92 <param name="input_type" value="paired"/> 100 <param name="input_type" value="paired"/>
93 <param name="reads_collection"> 101 <param name="reads_collection">
96 <element name="reverse" value="13-1941-6_S4_L001_R2_600000.fastq.gz" ftype="fastqsanger.gz"/> 104 <element name="reverse" value="13-1941-6_S4_L001_R2_600000.fastq.gz" ftype="fastqsanger.gz"/>
97 </collection> 105 </collection>
98 </param> 106 </param>
99 <param name="samtools_idxstats" value="samtools_idxstats5.tabular" ftype="tabular" dbkey="89"/> 107 <param name="samtools_idxstats" value="samtools_idxstats5.tabular" ftype="tabular" dbkey="89"/>
100 <param name="vsnp_azc_metrics" value="add_zc_metrics5.tabular" ftype="tabular" dbkey="89"/> 108 <param name="vsnp_azc_metrics" value="add_zc_metrics5.tabular" ftype="tabular" dbkey="89"/>
101 <output name="output" file="vsnp_statistics4.tabular" ftype="tabular" compare="contains"/> 109 <output name="output" ftype="tabular">
110 <assert_contents>
111 <has_size value="466"/>
112 </assert_contents>
113 </output>
102 </test> 114 </test>
103 </tests> 115 </tests>
104 <help> 116 <help>
105 **What it does** 117 **What it does**
106 118