Mercurial > repos > greg > vsnp_statistics

diff vsnp_statistics.xml @ 25:b908bb18008a draft

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Uploaded
author greg
date Thu, 16 Sep 2021 00:56:07 +0000
parents d4ef7003c539
children e219f5c06dc0
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line diff
--- a/vsnp_statistics.xml	Fri Aug 27 20:04:26 2021 +0000
+++ b/vsnp_statistics.xml	Thu Sep 16 00:56:07 2021 +0000
@@ -76,7 +76,7 @@
             <param name="read1" value="Mcap_Deer_DE_SRR650221.fastq.gz" ftype="fastqsanger.gz" dbkey="89"/>
             <param name="samtools_idxstats" value="samtools_idxstats1.tabular" ftype="tabular" dbkey="89"/>
             <param name="vsnp_azc_metrics" value="add_zc_metrics1.tabular" ftype="tabular" dbkey="89"/>
-            <output name="output" file="vsnp_statistics1.tabular" ftype="tabular"/>
+            <output name="output" file="vsnp_statistics1.tabular" ftype="tabular" compare="contains"/>
         </test>
         <!-- A set of paired fastq files -->
         <test expect_num_outputs="1">
@@ -85,7 +85,7 @@
             <param name="read2" value="13-1941-6_S4_L001_R2_600000.fastq.gz" ftype="fastqsanger.gz" dbkey="89"/>
             <param name="samtools_idxstats" value="samtools_idxstats2.tabular" ftype="tabular" dbkey="89"/>
             <param name="vsnp_azc_metrics" value="add_zc_metrics2.tabular" ftype="tabular" dbkey="89"/>
-            <output name="output" file="vsnp_statistics2.tabular" ftype="tabular"/>
+            <output name="output" file="vsnp_statistics2.tabular" ftype="tabular" compare="contains"/>
         </test>
         <!-- A collection of paired fastq files -->
         <test expect_num_outputs="1">
@@ -98,7 +98,7 @@
             </param>
             <param name="samtools_idxstats" value="samtools_idxstats5.tabular" ftype="tabular" dbkey="89"/>
             <param name="vsnp_azc_metrics" value="add_zc_metrics5.tabular" ftype="tabular" dbkey="89"/>
-            <output name="output" file="vsnp_statistics4.tabular" ftype="tabular"/>
+            <output name="output" file="vsnp_statistics4.tabular" ftype="tabular" compare="contains"/>
         </test>
     </tests>
     <help>