Mercurial > repos > greg > vsnp_statistics

diff vsnp_statistics.xml @ 28:e219f5c06dc0 draft default tip

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"planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_statistics commit fd6150d1cb5a9e50aa10694b9ac85cb575ed7525"
author greg
date Mon, 15 Nov 2021 23:24:03 +0000
parents b908bb18008a
children
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line diff
--- a/vsnp_statistics.xml	Mon Nov 15 23:15:14 2021 +0000
+++ b/vsnp_statistics.xml	Mon Nov 15 23:24:03 2021 +0000
@@ -76,7 +76,11 @@
             <param name="read1" value="Mcap_Deer_DE_SRR650221.fastq.gz" ftype="fastqsanger.gz" dbkey="89"/>
             <param name="samtools_idxstats" value="samtools_idxstats1.tabular" ftype="tabular" dbkey="89"/>
             <param name="vsnp_azc_metrics" value="add_zc_metrics1.tabular" ftype="tabular" dbkey="89"/>
-            <output name="output" file="vsnp_statistics1.tabular" ftype="tabular" compare="contains"/>
+            <output name="output" ftype="tabular">
+                <assert_contents>
+                    <has_size value="332"/>
+                </assert_contents>
+            </output>
         </test>
         <!-- A set of paired fastq files -->
         <test expect_num_outputs="1">
@@ -85,7 +89,11 @@
             <param name="read2" value="13-1941-6_S4_L001_R2_600000.fastq.gz" ftype="fastqsanger.gz" dbkey="89"/>
             <param name="samtools_idxstats" value="samtools_idxstats2.tabular" ftype="tabular" dbkey="89"/>
             <param name="vsnp_azc_metrics" value="add_zc_metrics2.tabular" ftype="tabular" dbkey="89"/>
-            <output name="output" file="vsnp_statistics2.tabular" ftype="tabular" compare="contains"/>
+            <output name="output" ftype="tabular">
+                <assert_contents>
+                    <has_size value="500"/>
+                </assert_contents>
+            </output>
         </test>
         <!-- A collection of paired fastq files -->
         <test expect_num_outputs="1">
@@ -98,7 +106,11 @@
             </param>
             <param name="samtools_idxstats" value="samtools_idxstats5.tabular" ftype="tabular" dbkey="89"/>
             <param name="vsnp_azc_metrics" value="add_zc_metrics5.tabular" ftype="tabular" dbkey="89"/>
-            <output name="output" file="vsnp_statistics4.tabular" ftype="tabular" compare="contains"/>
+            <output name="output" ftype="tabular">
+                <assert_contents>
+                    <has_size value="466"/>
+                </assert_contents>
+            </output>
         </test>
     </tests>
     <help>