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annotate run_tests.sh @ 0:1d62de03829d draft

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"planemo upload commit c6cd06d44dce1eef9136017289d362f144687dc1"
author gregor.m
date Mon, 23 Nov 2020 13:31:47 +0000
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children 4d7f30a7e2f6
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1 #!/usr/bin/env bash
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3 # example command, minimal options: no detrending,
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4 # no rescaling, no masking, no amplitude norm., no blurring
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6 INPUT_PATH='./test-data/test-movie.tif'
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7 # INPUT_PATH='./test-data/SCN_L20_Evans2013-half.tif'
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8 SCRIPT_PATH='.'
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10 python3 $SCRIPT_PATH/cl_wrapper.py --input_path $INPUT_PATH --phase_out phase_twosines_out.tif --period_out period_twosines_out.tif --power_out power_twosines_out.tif --amplitude_out amplitude_twosines_out.tif --dt .5 --Tmin 20 --Tmax 30 --nT 200 --ncpu 6 --masking dynamic --preprocessed_out preproc_two_sines.tif --gauss_sigma 3 --rescale 50 --Tcutoff 40 --masking fixed --mask_frame 10 --mask_thresh 8
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12 printf "\n"
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13 # printf "\nError examples:\n"
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15 # python3 $SCRIPT_PATH/cl_wrapper.py --input_path $INPUT_PATH --phase_out phase_twosines_out.tif --period_out period_twosines_out.tif --power_out power_twosines_out.tif --amplitude_out amplitude_twosines_out.tif --dt 2. --Tmin 20 --Tmax 30 --nT 200 --ncpu 6 --save_input True --masking fixed