Mercurial > repos > gregor.m > spyboat

annotate run_tests.sh @ 3:4d7f30a7e2f6 draft

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"planemo upload commit d070f1ba04a5141a65487f45b29c22767639e44b"
author gregor.m
date Tue, 24 Nov 2020 13:06:26 +0000
parents 1d62de03829d
children a4c6fcf2c456
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1d62de03829d "planemo upload commit c6cd06d44dce1eef9136017289d362f144687dc1"
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1 #!/usr/bin/env bash
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4 INPUT_PATH='./test-data/test-movie.tif'
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5 SCRIPT_PATH='.'
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7 python3 $SCRIPT_PATH/spyboat_cli.py --input_path $INPUT_PATH --phase_out phase_twosines_out.tif --period_out period_twosines_out.tif --power_out power_twosines_out.tif --amplitude_out amplitude_twosines_out.tif --dt 1 --Tmin 2 --Tmax 30 --nT 200 --ncpu 6 --masking dynamic --preprocessed_out preproc_two_sines.tif --gauss_sigma 3 --rescale 80 --Tcutoff 40 --masking static --mask_frame 10 --mask_thresh 8
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9 printf "\n"
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10 # printf "\nError examples:\n"
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12 # python3 $SCRIPT_PATH/cl_wrapper.py --input_path $INPUT_PATH --phase_out phase_twosines_out.tif --period_out period_twosines_out.tif --power_out power_twosines_out.tif --amplitude_out amplitude_twosines_out.tif --dt 2. --Tmin 20 --Tmax 30 --nT 200 --ncpu 6 --save_input True --masking fixed