Mercurial > repos > gregor.m > spyboat
comparison run_tests.sh @ 5:d5a4180410c4 draft default tip
"planemo upload commit 7bc843096b70fe1c8fc149e69d8f87fceac4eb3b"
| author | gregor.m |
|---|---|
| date | Sat, 28 Nov 2020 18:50:09 +0000 |
| parents | a4c6fcf2c456 |
| children |
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| 4:a4c6fcf2c456 | 5:d5a4180410c4 |
|---|---|
| 2 | 2 |
| 3 | 3 |
| 4 INPUT_PATH='./test-data/test-movie.tif' | 4 INPUT_PATH='./test-data/test-movie.tif' |
| 5 SCRIPT_PATH='.' | 5 SCRIPT_PATH='.' |
| 6 | 6 |
| 7 python3 $SCRIPT_PATH/spyboat_cli.py --input_path $INPUT_PATH --phase_out phase_test-movie.tif --period_out period_test-movie.tif --power_out power_test-movie.tif --amplitude_out amplitude_test-movie.tif --dt 1 --Tmin 20 --Tmax 30 --nT 200 --ncpu 6 --masking dynamic --preprocessed_out preproc_two_sines.tif --gauss_sigma 2 --rescale 80 --Tcutoff 40 --masking static --mask_frame 10 --mask_thresh 300 | 7 # set to galaxy defaults!! |
| 8 python3 $SCRIPT_PATH/spyboat_cli.py --input_path $INPUT_PATH --phase_out phase_out.tif --period_out period_out.tif --dt 1 --Tmin 20 --Tmax 30 --nT 150 --ncpu 6 --Tcutoff 40 | |
| 9 | |
| 10 # additional paramters | |
| 11 #--masking static --mask_frame 10 --mask_thresh 300 --rescale 80 --gauss_sigma 1 | |
| 8 | 12 |
| 9 printf "\n" | 13 printf "\n" |
| 10 # printf "\nError examples:\n" | 14 # printf "\nError examples:\n" |
| 11 | 15 |