comparison EMS_VariantDensityMapping.py @ 4:d2158e476320 draft

Uploaded

3:2e236e914815

#!/usr/bin/python

import sys
import optparse
import csv
from rpy import *

	iv_position_list = []
	v_position_list = []
	x_position_list = []

	for row in reader:
		chromosome = row[0]
		position = row[1]
		ref_allele = row[3]
		alt_allele = row[4]

		if  (ems=='true'):

4:d2158e476320

#!/usr/bin/python

import re
import sys
import optparse
import csv
from rpy import *

	iv_position_list = []
	v_position_list = []
	x_position_list = []

	for row in reader:
		chromosome = row[0].upper()
		chromosome = re.sub("chr", "", chromosome, flags = re.IGNORECASE)
		chromosome = re.sub("CHROMOSOME_", "", chromosome, flags = re.IGNORECASE)

		position = row[1]
		ref_allele = row[3]
		alt_allele = row[4]

		if  (ems=='true'):