# HG changeset patch
# User gtrichard
# Date 1565124639 14400
# Node ID f722611c079bd23b9092f8e76ffc72b479e0c4b9
# Parent f407a208747a86aad8a68fc3bfecbf10d080588a
Uploaded
diff -r f407a208747a -r f722611c079b datatypes_conf.xml
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+++ b/datatypes_conf.xml Tue Aug 06 16:50:39 2019 -0400
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diff -r f407a208747a -r f722611c079b deepStats_macros.xml
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+++ b/deepStats_macros.xml Tue Aug 06 16:50:39 2019 -0400
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+ --CPU "\${GALAXY_SLOTS:-4}"
+ 1.0.0
+ https://github.com/gtrichard/deepStats
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+ deepstats
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+ 10.5281/zenodo.3336594
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diff -r f407a208747a -r f722611c079b dsCompareCurves.xml
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+++ b/dsCompareCurves.xml Tue Aug 06 16:50:39 2019 -0400
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+ compares multiple genomic scores at multiple regions sets by bootstraps and per-bin distribution test
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+ dsCompareCurves
+ deepStats_macros.xml
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+ `
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+dsCompareCurves: Comparing multiple genomic scores at multiple regions sets
+===========================================================================
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+**dsCompareCurves** assesses if multiple genomics signals (ChIP-seq, ATAC-seq, etc as .bigwig files) are significantly different or not for multiple region sets (.bed files). ``dsCompareCurves`` uses bootstraps and corrected Wilcoxon Rank-sum tests to do so. This tool uses the output of deepTools ``computeMatrix --outFileNameMatrix``, that thus must be used prior to ``dsCompareCurves``. Eitherway the regions are compared for each signal (``--comparison regions``), or all the signals are compared for each region set (``--comparison scores``).
+
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+_______________
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+Example usage
+-------------
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+Below you can find an example of regions comparison.
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+We consider two set of regions, conserved genes, and unconserved genes in Drosophila melanogaster. The want to know which histone marks from modENCODE are differentially enriched between these two regions sets.
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+Prior to ``dsCompareCurves``, we used **deepTools** ``computeMatrix scale-regions`` with the two bed files as regions, and the three histone marks bigwig tracks as scores. We also added the optional parameter ``outFileNameMatrix`` in order to get the output as a tab-delimited file (.txt).
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+The latter file is then used as input for the present tool in "regions", in order to compare the conserved and unconserved genes for each one of the three histone marks. You can find an image describing the output below using the said data set and the following galaxy parameters:
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+.. class:: bold
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+`Example parameters`_
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+.. _Example parameters: https://raw.githubusercontent.com/gtrichard/deepStats/master/docs/images/dsCompareCurves_galaxy.png
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+:raw-html:` `
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+Output description
+++++++++++++++++++
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+.. image:: https://raw.githubusercontent.com/gtrichard/deepStats/master/docs/images/dsCompareCurves_doc.png
+ :width: 800
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+ ]]>
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