comparison spring_roc.xml @ 32:11b3fc8b5b48 draft

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    ]]></command>
    <inputs>
        <param name="input" type="data" format="tabular" label="Interactions" help="Prediction Input Table with 2-columns containing UniProt Accession codes."/>
        <param name="database" type="data" format="tabular" label="BioGRID Database" help="BioGRID Database in TAB 3.0 format."/>
        <conditional name="sampling">
            <param name="type" type="boolean" label="Use UniProt Localization" />
            <when value="true">
                <param name="locations" type="data" format="tabular" label="UniProt Localization" help="UniProt tabular export with localization column to sample non-interacting pairs." optional="True" />
                <param name="regions" type="select" multiple="True" label="Choose Subcelluar Locations">
                    <option value="Membrane" selected="True">Membrane</option>
                    <option value="Mitochondrion" selected="True">Mitochondrion</option>
                    <option value="Nucleus">Nucleus</option>
                    <option value="Secreted">Secreted</option>
                 </param>
            </when>
            <when value="false">
                <param name="locations" type="hidden" value="" />
                <param name="regions" type="hidden" value="" />
            </when>
        </conditional>
        <conditional name="experiment">

32:11b3fc8b5b48

    ]]></command>
    <inputs>
        <param name="input" type="data" format="tabular" label="Interactions" help="Prediction Input Table with 2-columns containing UniProt Accession codes."/>
        <param name="database" type="data" format="tabular" label="BioGRID Database" help="BioGRID Database in TAB 3.0 format."/>
        <conditional name="sampling">
            <param name="type" type="select" label="Non-interacting Pairs" display="radio" help="Decide how to retrieve non-interacting pairs.">
                <option value="random">Random Sampling</option>
                <option value="uniprot">Sampling with UniProt Localization</option>
            </param>
            <when value="uniprot">
                <param name="locations" type="data" format="tabular" label="UniProt Localization Database" help="UniProt tabular export with localization column to sample non-interacting pairs." optional="True" />
                <param name="regions" type="select" multiple="True" label="Choose Subcelluar Locations">
                    <option value="Membrane" selected="True">Membrane</option>
                    <option value="Mitochondrion" selected="True">Mitochondrion</option>
                    <option value="Nucleus">Nucleus</option>
                    <option value="Secreted">Secreted</option>
                 </param>
            </when>
            <when value="random">
                <param name="locations" type="hidden" value="" />
                <param name="regions" type="hidden" value="" />
            </when>
        </conditional>
        <conditional name="experiment">