comparison spring_minz.xml @ 7:2b9ed61195e2 draft

"planemo upload commit ab5e686c62d07a0d45216b474d435b855745222d-dirty"

6:323f11769abf

            echo '${input.element_identifier}' >> 'input_list' &&
        #end for
        python3 '$__tool_directory__/spring_minz.py' -m '$minscore' -t '$target' -c '$crossreference' -o '$output' -l input_list -i inputs
    ]]></command>
    <inputs>
        <param format="txt" name="target" type="data" label="Target Profile" help="Homology search results of query sequence `hhr`. (-t)"/>
        <param format="txt" name="inputs" type="data_collection" collection_type="list" label="Input Profiles" help="Homology search results of target sequences `hhr`. (-i)"/>
        <param format="txt" name="crossreference" type="data" label="Cross Reference" help="Cross reference of interacting proteins pairs. (-c)"/>
        <param name="minscore" type="integer" label="min-Z score threshold" value="10" min="1" max="100" help="Matching complex templates with a score lower than this threshold will be excluded. (-c)"/>
    </inputs>
    <outputs>
        <data format="txt" name="output" />
    </outputs>
    <tests>

7:2b9ed61195e2

            echo '${input.element_identifier}' >> 'input_list' &&
        #end for
        python3 '$__tool_directory__/spring_minz.py' -m '$minscore' -t '$target' -c '$crossreference' -o '$output' -l input_list -i inputs
    ]]></command>
    <inputs>
        <param format="txt" name="target" type="data" label="Target Profile" help="Homology search result of target/query profile `hhr`."/>
        <param format="txt" name="inputs" type="data_collection" collection_type="list" label="Input Profiles" help="Homology search results of input profiles `hhr`."/>
        <param format="txt" name="crossreference" type="data" label="Cross Reference" help="Cross reference of interacting proteins pairs from SPRING database protocol."/>
        <param name="minscore" type="integer" label="min-Z score threshold" value="10" min="1" max="100" help="Matching interaction pairs with a score lower than this threshold will be excluded."/>
    </inputs>
    <outputs>
        <data format="txt" name="output" />
    </outputs>
    <tests>