Mercurial > repos > guerler > springsuite
comparison spring_roc.xml @ 36:2fe8ffff530d draft
"planemo upload commit 135985d861c02f01fb4fb139834dc4d9b9521f53-dirty"
| author | guerler |
|---|---|
| date | Tue, 24 Nov 2020 18:16:01 +0000 |
| parents | b300ddbbf9d0 |
| children | 80a4b98121b6 |
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| 35:0bcc0a269916 | 36:2fe8ffff530d |
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| 5 </requirements> | 5 </requirements> |
| 6 <command detect_errors="exit_code"><![CDATA[ | 6 <command detect_errors="exit_code"><![CDATA[ |
| 7 python3 '$__tool_directory__/spring_roc.py' -i '$input' -b '$database' -e '$experiment.type' -m '$experiment.method' -t '$throughput' -l '$sampling.locations' -r '$sampling.regions' -n '$sampling.negative' -o '$rocplot' | 7 python3 '$__tool_directory__/spring_roc.py' -i '$input' -b '$database' -e '$experiment.type' -m '$experiment.method' -t '$throughput' -l '$sampling.locations' -r '$sampling.regions' -n '$sampling.negative' -o '$rocplot' |
| 8 ]]></command> | 8 ]]></command> |
| 9 <inputs> | 9 <inputs> |
| 10 <param name="input" type="data" format="tabular" label="Interactions" help="Prediction Input Table with 2-columns containing UniProt Accession codes."/> | 10 <param name="input" type="data" format="tabular" label="Interacting Pairs" help="Prediction input containing UniProt Accession codes (2-columns)."/> |
| 11 <param name="database" type="data" format="tabular" label="BioGRID Database" help="BioGRID Database in TAB 3.0 format."/> | |
| 12 <conditional name="sampling"> | 11 <conditional name="sampling"> |
| 13 <param name="type" type="select" label="Non-interacting Pairs" display="radio" help="Decide how to retrieve non-interacting pairs."> | 12 <param name="type" type="select" label="Non-interacting Pairs" display="radio" help="Specify how to determine non-interacting pairs."> |
| 14 <option value="random">Random Sampling</option> | 13 <option value="random">Random Sampling</option> |
| 15 <option value="uniprot">Sampling with UniProt Localization</option> | 14 <option value="uniprot">Sampling with UniProt Localization</option> |
| 16 <option value="negative">Specify non-interacting pairs</option> | 15 <option value="negative">Specify non-interacting pairs</option> |
| 17 </param> | 16 </param> |
| 18 <when value="uniprot"> | 17 <when value="uniprot"> |
| 30 <param name="locations" type="hidden" value="" /> | 29 <param name="locations" type="hidden" value="" /> |
| 31 <param name="regions" type="hidden" value="" /> | 30 <param name="regions" type="hidden" value="" /> |
| 32 </when> | 31 </when> |
| 33 <when value="negative"> | 32 <when value="negative"> |
| 34 <param name="locations" type="hidden" value="" /> | 33 <param name="locations" type="hidden" value="" /> |
| 35 <param name="negative" type="data" format="tabular" label="Non-interacting Pairs" help="Tabular file containing non-interacting pairs." /> | 34 <param name="negative" type="data" format="tabular" label="Non-interacting Pairs" help="Tabular file containing non-interacting pairs (2-columns)." /> |
| 36 <param name="regions" type="hidden" value="" /> | 35 <param name="regions" type="hidden" value="" /> |
| 37 </when> | 36 </when> |
| 38 </conditional> | 37 </conditional> |
| 38 <param name="database" type="data" format="tabular" label="BioGRID Database" help="BioGRID Database in TAB 3.0 format."/> | |
| 39 <conditional name="experiment"> | 39 <conditional name="experiment"> |
| 40 <param name="type" type="select" label="Experimental Type" display="radio" help="Choose a specific experimental system type."> | 40 <param name="type" type="select" label="Experimental Type" display="radio" help="Choose a specific experimental system type."> |
| 41 <option value="">Any</option> | 41 <option value="">Any</option> |
| 42 <option value="physical">Physical</option> | 42 <option value="physical">Physical</option> |
| 43 <option value="genetic">Genetic</option> | 43 <option value="genetic">Genetic</option> |