Mercurial > repos > guerler > springsuite
comparison spring_minz.py @ 15:4a4888bf0338 draft
"planemo upload commit 5520427eafa1144d04445e0b87112a7ff615aed1"
| author | guerler |
|---|---|
| date | Sun, 27 Sep 2020 20:52:58 +0000 |
| parents | 21a7dd67b483 |
| children | 16eb2acaaa20 |
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| 14:b53a98b90354 | 15:4a4888bf0338 |
|---|---|
| 41 interactions.append((name, minz)) | 41 interactions.append((name, minz)) |
| 42 print("Predicting: %s, min-Z: %s" % (name, minz)) | 42 print("Predicting: %s, min-Z: %s" % (name, minz)) |
| 43 interactions.sort(key=lambda tup: tup[1], reverse=True) | 43 interactions.sort(key=lambda tup: tup[1], reverse=True) |
| 44 with open(args.output, 'a+') as output_file: | 44 with open(args.output, 'a+') as output_file: |
| 45 for i in interactions: | 45 for i in interactions: |
| 46 output_file.write("%s %s %s\n" % (args.name, i[0], i[1])) | 46 output_file.write("%s\t%s\t%s\n" % (args.name, i[0], i[1])) |
| 47 | 47 |
| 48 def get_template_scores(hhr_file, min_score, identifier_length): | 48 def get_template_scores(hhr_file, min_score, identifier_length): |
| 49 result = {} | 49 result = {} |
| 50 identifier_length = identifier_length + 4 | 50 identifier_length = identifier_length + 4 |
| 51 if os.path.isfile(hhr_file): | 51 if os.path.isfile(hhr_file): |