comparison spring_minz.xml @ 24:802daf2993b0 draft

"planemo upload commit 37a4c6844fd7ab1071ddf90f51915ec1a13c26b3-dirty"

23:5469e19f1f96

        #else
            python3 '$__tool_directory__/spring_minz.py' -tl target_list -tp targets -m '$minscore' -c '$crossreference' -x '$idx' -o '$output' -l '$log'
        #end if
    ]]></command>
    <inputs>
        <param format="txt" name="targets" type="data_collection" collection_type="list" label="Target Profiles" help="Homology search result of target/query profiles `hhr`."/>
        <conditional name="input_type">
            <param name="input_type_selector" type="boolean" label="Identify interactions across sets?" checked="true"/>
            <when value="true">
                <param format="txt" name="inputs" type="data_collection" collection_type="list" label="Input Profiles" help="Homology search results of input profiles `hhr`."/>
            </when>
        </conditional>
        <param format="txt" name="crossreference" type="data" label="Cross Reference" help="Cross reference of interacting proteins `first_id metadata_id second_id`."/>
        <param name="minscore" type="integer" label="Score threshold" value="10" min="1" max="200" help="Matching interaction pairs with a score lower than this threshold will be excluded."/>
        <param name="idx" type="integer" label="Identifier length" value="6" min="1" max="20" help="Specify the length of the identifier e.g. `1ACB_A` has length 6."/>
    </inputs>
    <outputs>
        <data format="tabular" name="output" label="SPRING min-Z Table"/>

24:802daf2993b0

        #else
            python3 '$__tool_directory__/spring_minz.py' -tl target_list -tp targets -m '$minscore' -c '$crossreference' -x '$idx' -o '$output' -l '$log'
        #end if
    ]]></command>
    <inputs>
        <param format="txt" name="targets" type="data_collection" collection_type="list" label="Target profiles" help="Homology search result of target/query profiles `hhr`."/>
        <conditional name="input_type">
            <param name="input_type_selector" type="boolean" label="Identify interactions across sets?" checked="true"/>
            <when value="true">
                <param format="txt" name="inputs" type="data_collection" collection_type="list" label="Input profiles" help="Homology search results of input profiles `hhr`."/>
            </when>
        </conditional>
        <param format="txt" name="crossreference" type="data" label="Cross reference" help="Cross reference of interacting proteins `first_id metadata_id second_id`."/>
        <param name="minscore" type="integer" label="Score threshold" value="10" min="1" max="200" help="Matching interaction pairs with a score lower than this threshold will be excluded."/>
        <param name="idx" type="integer" label="Identifier length" value="6" min="1" max="20" help="Specify the length of the identifier e.g. `1ACB_A` has length 6."/>
    </inputs>
    <outputs>
        <data format="tabular" name="output" label="SPRING min-Z Table"/>