Mercurial > repos > guerler > springsuite
comparison spring_cross.xml @ 38:80a4b98121b6 draft
"planemo upload commit 22cd6b0fa88ce0ddc4052beab306f5ba10754f12"
| author | guerler |
|---|---|
| date | Wed, 25 Nov 2020 17:38:24 +0000 |
| parents | 0be0af9e695d |
| children | 172398348efd |
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| 37:0be0af9e695d | 38:80a4b98121b6 |
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| 2 <description>reference builder</description> | 2 <description>reference builder</description> |
| 3 <command detect_errors="exit_code"><![CDATA[ | 3 <command detect_errors="exit_code"><![CDATA[ |
| 4 python3 '$__tool_directory__/spring_cross.py' -l '$list' -i '$index' -d '$database' -o '$output' -g '$log' -t temp | 4 python3 '$__tool_directory__/spring_cross.py' -l '$list' -i '$index' -d '$database' -o '$output' -g '$log' -t temp |
| 5 ]]></command> | 5 ]]></command> |
| 6 <inputs> | 6 <inputs> |
| 7 <param format="tabular" name="list" type="data" label="PDB Chain Identifiers" help="List of PDB chains [PDB_CHAIN]."/> | 7 <param format="tabular" name="list" type="data" label="PDB Chain Identifiers" help="List of PDB chains `PDB_CHAIN`."/> |
| 8 <param format="tabular" name="index" type="data" label="PDB Database Index" help="Database Index file (ffindex)."/> | 8 <param format="ffindex" name="index" type="data" label="PDB Database Index" help="Database Index file."/> |
| 9 <param format="data" name="database" type="data" label="PDB Database" help="Database Data file (ffdata)."/> | 9 <param format="ffdata" name="database" type="data" label="PDB Database" help="Database Data file."/> |
| 10 </inputs> | 10 </inputs> |
| 11 <outputs> | 11 <outputs> |
| 12 <data format="tabular" name="output" label="SPRING Cross Reference"/> | 12 <data format="tabular" name="output" label="SPRING Cross Reference"/> |
| 13 <data format="txt" name="log" label="SPRING Cross Log"/> | 13 <data format="txt" name="log" label="SPRING Cross Log"/> |
| 14 </outputs> | 14 </outputs> |