comparison spring_map.xml @ 38:80a4b98121b6 draft

"planemo upload commit 22cd6b0fa88ce0ddc4052beab306f5ba10754f12"

37:0be0af9e695d

    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        python3 '$__tool_directory__/spring_map.py' -l '$list' -i '$index' -d '$database' -c '$cross' -o '$output' -g '$log' -t temp
    ]]></command>
    <inputs>
        <param format="tabular" name="list" type="data" label="PDB Chain Identifiers" help="List of PDB chains [PDB_CHAIN]."/>
        <param format="tabular" name="index" type="data" label="PDB Database Index" help="Database Index file (ffindex)."/>
        <param format="data" name="database" type="data" label="PDB Database" help="Database Data file (ffdata)."/>
        <param format="tabular" name="cross" type="data" label="Unmapped Cross Reference" help="SPRING PDB Cross Reference (unmapped)."/>
    </inputs>
    <outputs>
        <data format="tabular" name="output" label="SPRING Map Cross Reference"/>
        <data format="txt" name="log" label="SPRING Map Log"/>
    </outputs>

38:80a4b98121b6

    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        python3 '$__tool_directory__/spring_map.py' -l '$list' -i '$index' -d '$database' -c '$cross' -o '$output' -g '$log' -t temp
    ]]></command>
    <inputs>
        <param format="tabular" name="list" type="data" label="PDB Chain Identifiers" help="List of PDB chains `PDB_CHAIN`."/>
        <param format="ffindex" name="index" type="data" label="PDB Database Index" help="Database Index file."/>
        <param format="ffdata" name="database" type="data" label="PDB Database" help="Database Data file."/>
        <param format="tabular" name="cross" type="data" label="Cross Reference (unmapped)" help="Unmapped SPRING PDB Cross Reference as produced by SPRING Cross tool."/>
    </inputs>
    <outputs>
        <data format="tabular" name="output" label="SPRING Map Cross Reference"/>
        <data format="txt" name="log" label="SPRING Map Log"/>
    </outputs>