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comparison spring_minz.xml @ 4:bde9a1a44a36 draft

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"planemo upload commit 3002402473e9f6dcdac5bfb4013cd2d81884a938"
author guerler
date Fri, 31 Jul 2020 10:58:12 -0400
parents c4b2e16845ab
children e44b8a76d754
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3:c4b2e16845ab 4:bde9a1a44a36
2 <description>Filter operation</description> 2 <description>Filter operation</description>
3 <code file="spring_minz.py"/> 3 <code file="spring_minz.py"/>
4 <command detect_errors="exit_code"><![CDATA[ 4 <command detect_errors="exit_code"><![CDATA[
5 mkdir -p inputs && 5 mkdir -p inputs &&
6 #for input in $inputs 6 #for input in $inputs
7 link '${str(input)}' 'inputs/${input.name}' && 7 link '${str(input)}' 'inputs/${input.element_identifier}' &&
8 echo '${input.name}' >> 'input_list' && 8 echo '${input.element_identifier}' >> 'input_list' &&
9 #end for 9 #end for
10 python3 '$__tool_directory__/spring_minz.py' -m '$minscore' -t '$target' -c '$crossreference' -o '$output' -l input_list -i inputs 10 python3 '$__tool_directory__/spring_minz.py' -m '$minscore' -t '$target' -c '$crossreference' -o '$output' -l input_list -i inputs
11 ]]></command> 11 ]]></command>
12 <inputs> 12 <inputs>
13 <param format="data" name="target" type="data" label="Target Sequence" help="Homology search results of query sequence `hhr`. (-t)"/> 13 <param format="data" name="target" type="data" label="Target Sequence" help="Homology search results of query sequence `hhr`. (-t)"/>