Mercurial > repos > guerler > springsuite

diff spring_minz.xml @ 12:0ea00dce62ab draft

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"planemo upload commit 373d73ef3a09902e75f10084e30b271d84a6d7b1"
author guerler
date Fri, 25 Sep 2020 19:39:11 +0000
parents 21a7dd67b483
children f8ba4dd48cbd
line wrap: on
line diff
--- a/spring_minz.xml	Fri Sep 25 19:07:14 2020 +0000
+++ b/spring_minz.xml	Fri Sep 25 19:39:11 2020 +0000
@@ -8,8 +8,9 @@
             echo '${input.element_identifier}' >> 'input_list' &&
         #end for
         #for target in $targets
-            python3 '$__tool_directory__/spring_minz.py' -m '$minscore' -t '${str(target)}' -n '${target.element_identifier}' -c '$crossreference' -x '$idx' -o '$output' -l input_list -i inputs
+            python3 '$__tool_directory__/spring_minz.py' -m '$minscore' -t '${str(target)}' -n '${target.element_identifier}' -c '$crossreference' -x '$idx' -o '$output' -l input_list -i inputs &&
         #end for
+        echo 0
     ]]></command>
     <inputs>
         <param format="txt" name="targets" type="data_collection" label="Target Profiles" help="Homology search result of target/query profiles `hhr`."/>
@@ -25,20 +26,29 @@
         <test>
             <param name="targets">
                 <collection type="list">
+                    <element name="6W4H_A.hhr" value="6W4H_A.hhr" />
+                    <element name="6W4H_B.hhr" value="6W4H_B.hhr" />
+                    <element name="6W9C_A.hhr" value="6W9C_A.hhr" />
+                    <element name="6W9Q_A.hhr" value="6W9Q_A.hhr" />
+                    <element name="6W37_A.hhr" value="6W37_A.hhr" />
+                    <element name="6WEY_A.hhr" value="6WEY_A.hhr" />
+                    <element name="6WJI_A.hhr" value="6WJI_A.hhr" />
+                    <element name="6WLC_A.hhr" value="6WLC_A.hhr" />
                     <element name="7BQY_A.hhr" value="7BQY_A.hhr" />
                 </collection>
             </param>
             <param name="idx" value="10"/>
             <param name="inputs">
                 <collection type="list">
-                    <element name="6W37_A.hhr" value="6W37_A.hhr" />
                     <element name="6W4H_A.hhr" value="6W4H_A.hhr" />
                     <element name="6W4H_B.hhr" value="6W4H_B.hhr" />
                     <element name="6W9C_A.hhr" value="6W9C_A.hhr" />
                     <element name="6W9Q_A.hhr" value="6W9Q_A.hhr" />
+                    <element name="6W37_A.hhr" value="6W37_A.hhr" />
                     <element name="6WEY_A.hhr" value="6WEY_A.hhr" />
                     <element name="6WJI_A.hhr" value="6WJI_A.hhr" />
                     <element name="6WLC_A.hhr" value="6WLC_A.hhr" />
+                    <element name="7BQY_A.hhr" value="7BQY_A.hhr" />
                 </collection>
             </param>
             <param name="crossreference" value="dbCAN_random.txt"/>