# HG changeset patch
# User guerler
# Date 1596269779 14400
# Node ID 860bd6f8f4802119a77583d83e408d4c8e1c4050
# Parent 4ac5d5a9b21c82cea052378ea52019307813b3cc
"planemo upload commit 4b670114bbbbbe3c5207cee572a20dc48f27494a"
diff -r 4ac5d5a9b21c -r 860bd6f8f480 spring_minz.xml
--- a/spring_minz.xml Sat Aug 01 02:13:31 2020 -0400
+++ b/spring_minz.xml Sat Aug 01 04:16:19 2020 -0400
@@ -14,13 +14,31 @@
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@@ -30,8 +48,8 @@
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CAG81347.1|CBM19|426-466|7e-13
+Probab=38.48 E-value=0.21 Score=21.26 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=20.7 Template_Neff=3.400
+
+Q 6W37_A 32 HPLADNKFALTCFSTQFAFACPDGV 56 (66)
+Q Consensus 32 hpladnkfaltcfstqfafacpdgv 56 (66)
+ .=-+|.||++.-+..-.-+.||.|.
+T Consensus 16 sCt~~g~f~iC~~G~WV~~~Cp~gt 40 (44)
+T CAG81347.1|CBM 16 ACTADGKFAVCDHGKWVTTECPSGT 40 (44)
+Confidence 3346889999999988899999886
+
+
+No 2
+>BAE59978.1|GT59|35-538|9.4e-149
+Probab=5.38 E-value=4.6 Score=21.57 Aligned_cols=12 Identities=50% Similarity=0.609 Sum_probs=8.3 Template_Neff=4.400
+
+Q 6W37_A 27 GNSPFHP--LADNK 38 (66)
+Q Consensus 27 gnspfhp--ladnk 38 (66)
+ -++..|| ||||+
+T Consensus 308 ~fTivHPflLADNR 321 (418)
+T BAE59978.1|GT5 308 FFTIVHPFLLADNR 321 (418)
+Confidence 3566677 78885
+
+
+No 3
+>ADI26643.1|GH52|20-439|6.2e-219
+Probab=3.69 E-value=7.4 Score=20.97 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=17.5 Template_Neff=2.800
+
+Q 6W37_A 25 YEGNSPFHPLA------DNKFALTCFSTQFAFACPD 54 (66)
+Q Consensus 25 yegnspfhpla------dnkfaltcfstqfafacpd 54 (66)
+ |||+.|+.|+. +.+..=.....+.+||+++
+T Consensus 141 ~eg~~~~s~mr~l~d~~~~~~~G~~~gr~~g~at~~ 176 (418)
+T ADI26643.1|GH5 141 LEGTDPYSSMRRISDDTDGQLIGVGQGRITGIATNS 176 (418)
+Confidence 67887776654 2344434445566777765
+
+
+No 4
+>AWM09982.1|GH5_39.hmm|1.8e-97|57-349
+Probab=2.60 E-value=11 Score=18.56 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=19.6 Template_Neff=4.500
+
+Q 6W37_A 15 LLKEPCSSGTYEGNSPFHPLADNKFA 40 (66)
+Q Consensus 15 llkepcssgtyegnspfhpladnkfa 40 (66)
+ |+-.|+.-+.+|+---++||+|.+..
+T Consensus 153 lIv~g~~w~~~e~L~~l~PlaD~Nvv 178 (305)
+T AWM09982.1|GH5 153 LIVSGANWQRIESLVALRPLADPNVI 178 (305)
+Confidence 44456666678889999999998754
+
+
+No 5
+>ACY95489.1|CBM14|33-88|9.4e-16
+Probab=2.45 E-value=12 Score=14.02 Aligned_cols=18 Identities=39% Similarity=0.743 Sum_probs=10.1 Template_Neff=6.300
+
+Q 6W37_A 5 YQECVRGTTVLLKEPCSSGT 24 (66)
+Q Consensus 5 yqecvrgttvllkepcssgt 24 (66)
+ |-.|+.|..++ ..|..|.
+T Consensus 29 Yy~C~~g~~~~--~~Cp~g~ 46 (81)
+T ACY95489.1|CBM 29 YYICVNGKPVE--FSCPPGL 46 (81)
+Confidence 55676665433 3666554
+
+
+No 6
+>ABO94043.1|GH5_32.hmm|1.7e-156|162-501
+Probab=2.36 E-value=13 Score=19.21 Aligned_cols=17 Identities=35% Similarity=0.595 Sum_probs=10.6 Template_Neff=2.300
+
+Q 6W37_A 45 STQFAFACPDGVKHVYQ 61 (66)
+Q Consensus 45 stqfafacpdgvkhvyq 61 (66)
+ ++.-||+|.|-+.+|-|
+T Consensus 238 ~~Gca~sCsD~~e~va~ 254 (341)
+T ABO94043.1|GH5 238 PRGCAFSCSDSEEQVAQ 254 (341)
+Confidence 34457777777776543
+
+
+No 7
+>ABQ06203.1|PL36.hmm|2.8e-93|60-255
+Probab=2.05 E-value=15 Score=17.27 Aligned_cols=15 Identities=33% Similarity=0.722 Sum_probs=11.5 Template_Neff=1.000
+
+Q 6W37_A 43 CFSTQFAFACPDGVK 57 (66)
+Q Consensus 43 cfstqfafacpdgvk 57 (66)
+ --|..|.+-||.|..
+T Consensus 75 ggsarfmwycpngsn 89 (197)
+T ABQ06203.1|PL3 75 GGSARFMWYCPNGSN 89 (197)
+Confidence 347788899998864
+
+
+No 8
+>AXR41035.1|GH43_27.hmm|1.6e-119|344-677
+Probab=1.96 E-value=16 Score=18.30 Aligned_cols=18 Identities=56% Similarity=0.637 Sum_probs=14.2 Template_Neff=3.500
+
+Q 6W37_A 48 FAFACPDGVKHVYQLRAR 65 (66)
+Q Consensus 48 fafacpdgvkhvyqlrar 65 (66)
+ ||-|-|-||-.|.|-|.|
+T Consensus 2 ~~~~~~~~~~~~~~~~~R 19 (323)
+T AXR41035.1|GH4 2 FADAQPTGVLDVVQTRGR 19 (323)
+Confidence 566788999888887765
+
+
+No 9
+>CCA69005.1|AA7||49-484
+Probab=1.92 E-value=16 Score=18.89 Aligned_cols=10 Identities=50% Similarity=0.408 Sum_probs=6.3 Template_Neff=4.100
+
+Q 6W37_A 57 KHVYQLRARS 66 (66)
+Q Consensus 57 khvyqlrars 66 (66)
+ ++=.|+|+||
+T Consensus 34 ~~gv~vr~RS 43 (456)
+T CCA69005.1|AA7 34 KLGVQVRIRS 43 (456)
+Confidence 3336778776
+
+
+No 10
+>CAA54566.1|PL22|32-145|1.6e-32
+Probab=1.89 E-value=17 Score=15.88 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=14.4 Template_Neff=5.400
+
+Q 6W37_A 41 LTCFSTQFAFACPDGVKHVYQL 62 (66)
+Q Consensus 41 ltcfstqfafacpdgvkhvyql 62 (66)
+ .+--|..+-|..|||.+-.|+.
+T Consensus 21 ~~~dg~~~~f~~~d~~~~~~~~ 42 (177)
+T CAA54566.1|PL2 21 FEGDGCTHEFWVPDGSAFDYVS 42 (177)
+Confidence 3344667788888887665543
+
+
diff -r 4ac5d5a9b21c -r 860bd6f8f480 test-data/6W4H_A.hhr
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/6W4H_A.hhr Sat Aug 01 04:16:19 2020 -0400
@@ -0,0 +1,140 @@
+Query 6W4H_A
+Match_columns 333
+No_of_seqs 1 out of 1
+Neff 1
+Searched_HMMs 641
+Date Sat Aug 1 03:09:03 2020
+Command hhsearch -e 0.001 -i /Users/guerler/galaxy/database/files/000/dataset_688.dat -d hhdb -o /Users/guerler/galaxy/database/files/000/dataset_829.dat
+
+ No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
+ 1 CAA16605.1|GT77|149-346|1.8e-5 6.5 3.6 0.0056 24.7 0.0 27 230-256 189-217 (227)
+ 2 EOY02636.1|GT96||31-333 6.2 3.9 0.006 26.8 0.0 29 226-254 124-158 (304)
+ 3 AAF14068.1|GT11|63-333|1e-95 4.2 6.3 0.0098 22.9 0.0 12 206-217 227-238 (272)
+ 4 AAC45780.1|CBM26|490-567|2.8e- 2.9 10 0.016 19.0 0.0 6 9-14 30-35 (77)
+ 5 CAG86794.1|GT91|125-678|5e-175 2.0 15 0.024 23.6 0.0 31 281-315 282-312 (458)
+ 6 CAA70732.1|GT16|90-439|6e-176 1.5 22 0.034 22.3 0.0 13 68-80 276-288 (350)
+ 7 BAE58124.1|GH93|42-352|1.5e-12 1.4 24 0.037 21.2 0.0 42 76-118 222-274 (311)
+ 8 BAI50574.1|PL18|188-375|3.3e-1 1.4 24 0.037 20.3 0.0 26 93-126 61-86 (188)
+ 9 AEO58137.1|AA3_1|AA8|CBM1|1.1. 1.3 25 0.039 24.1 0.0 64 53-119 690-759 (815)
+ 10 ABQ42392.1|CE8|283-579|4.2e-11 1.3 25 0.039 20.3 0.0 26 86-111 208-233 (290)
+
+No 1
+>CAA16605.1|GT77|149-346|1.8e-54
+Probab=6.55 E-value=3.6 Score=24.70 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=17.0 Template_Neff=6.000
+
+Q 6W4H_A 230 IGCNYLGKPR--REQQIDGYYVMHANYII 256 (333)
+Q Consensus 230 igcnylgkpr--reqqidgyyvmhanyii 256 (333)
+ -||.|.-.-+ .++....-|.|||||++
+T Consensus 189 ng~~~F~~~~~~~~~~~~~p~~vHan~~~ 217 (227)
+T CAA16605.1|GT7 189 NGCTYFVQRRKDYSRDKLKPYTVHANYCP 217 (227)
+Confidence 3565544333 33345567999999986
+
+
+No 2
+>EOY02636.1|GT96||31-333
+Probab=6.19 E-value=3.9 Score=26.80 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=22.1 Template_Neff=3.200
+
+Q 6W4H_A 226 AFLLIGCNY------LGKPRREQQIDGYYVMHANY 254 (333)
+Q Consensus 226 aflligcny------lgkprreqqidgyyvmhany 254 (333)
+ -.-||||.- ...|+|-+|..|..+||..=
+T Consensus 124 Y~YL~G~dN~lAk~h~~~~~~~dkVGG~~imh~dD 158 (304)
+T EOY02636.1|GT9 124 YGYLIGCDNELAKLHTRHPERCDKVGGVIIMHIDD 158 (304)
+Confidence 345788853 34578999999999999764
+
+
+No 3
+>AAF14068.1|GT11|63-333|1e-95
+Probab=4.20 E-value=6.3 Score=22.91 Aligned_cols=12 Identities=33% Similarity=1.326 Sum_probs=9.7 Template_Neff=7.300
+
+Q 6W4H_A 206 GHFAWWTAFVTN 217 (333)
+Q Consensus 206 ghfawwtafvtn 217 (333)
+ +-|+||.|+...
+T Consensus 227 STFSWW~A~L~~ 238 (272)
+T AAF14068.1|GT1 227 STFSWWAAYLNK 238 (272)
+Confidence 469999998764
+
+
+No 4
+>AAC45780.1|CBM26|490-567|2.8e-23
+Probab=2.89 E-value=10 Score=18.95 Aligned_cols=6 Identities=83% Similarity=1.353 Sum_probs=3.3 Template_Neff=5.200
+
+Q 6W4H_A 9 PGVAMP 14 (333)
+Q Consensus 9 pgvamp 14 (333)
+ ||++|-
+T Consensus 30 PG~~Mt 35 (77)
+T AAC45780.1|CBM 30 PGVAMT 35 (77)
+Confidence 555554
+
+
+No 5
+>CAG86794.1|GT91|125-678|5e-175
+Probab=2.02 E-value=15 Score=23.58 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=21.4 Template_Neff=4.600
+
+Q 6W4H_A 281 LKLRRGTAVMSLKEGQIINDMILSSLLSKGRRLII 315 (333)
+Q Consensus 281 lklrrgtavmslkegqiindmilssllskgrrlii 315 (333)
+ -.||.||..+.+. |.|.. +...+.++|.+-|
+T Consensus 282 g~LRGGT~lv~ip--~~ip~--~~~~l~~~ReiWv 312 (458)
+T CAG86794.1|GT9 282 GPLRGGTNLVNIP--QLIPS--LKKHLPKNREIWV 312 (458)
+Confidence 3589999998877 44443 6667777777654
+
+
+No 6
+>CAA70732.1|GT16|90-439|6e-176
+Probab=1.51 E-value=22 Score=22.30 Aligned_cols=13 Identities=54% Similarity=0.861 Sum_probs=10.4 Template_Neff=2.900
+
+Q 6W4H_A 68 VPYNMRVIHFGAG 80 (333)
+Q Consensus 68 vpynmrvihfgag 80 (333)
+ +|-..||+|||--
+T Consensus 276 ~~~~PRv~H~G~C 288 (350)
+T CAA70732.1|GT1 276 VPRGPRVFHFGDC 288 (350)
+Confidence 7788899999743
+
+
+No 7
+>BAE58124.1|GH93|42-352|1.5e-123
+Probab=1.39 E-value=24 Score=21.15 Aligned_cols=42 Identities=29% Similarity=0.470 Sum_probs=24.0 Template_Neff=4.700
+
+Q 6W4H_A 76 HFGAGSDKGVAPGTAVLRR-------QWL----PTGTLLLVDSDLNDDFVVSDA 118 (333)
+Q Consensus 76 hfgagsdkgvapgtavlrr-------qwl----ptgtlllvdsdlnddfvvsda 118 (333)
+ +||...+ |...-|+.-+. -|+ |.|+|+++.....+-|.....
+T Consensus 222 ~Wg~~~~-g~~v~t~~g~~~~gaPyV~w~p~gg~nG~lvvs~~t~~~~~~n~~~ 274 (311)
+T BAE58124.1|GH9 222 NWGDPTD-GTRVRTADGGQPAGAPYVTWLPDGGPNGTLVVSGQTDESSFGNQAG 274 (311)
+Confidence 4555555 44444443221 378 788888887766665554433
+
+
+No 8
+>BAI50574.1|PL18|188-375|3.3e-111
+Probab=1.38 E-value=24 Score=20.30 Aligned_cols=26 Identities=38% Similarity=0.423 Sum_probs=18.7 Template_Neff=1.800
+
+Q 6W4H_A 93 RRQWLPTGTLLLVDSDLNDDFVVSDADSSTLIGD 126 (333)
+Q Consensus 93 rrqwlptgtlllvdsdlnddfvvsdadsstligd 126 (333)
+ ...--.|||+++| .|||.++|-++..
+T Consensus 61 QhHa~DTgTi~kv--------YvsDt~esgf~ds 86 (188)
+T BAI50574.1|PL1 61 QHHASDTGTISKV--------YVSDTDESGFIDS 86 (188)
+Confidence 3344568888876 5889999888743
+
+
+No 9
+>AEO58137.1|AA3_1|AA8|CBM1|1.1.99.18|7-827
+Probab=1.33 E-value=25 Score=24.07 Aligned_cols=64 Identities=27% Similarity=0.385 Sum_probs=42.3 Template_Neff=3.200
+
+Q 6W4H_A 53 KYTQLCQYLNTLTLAVPYNMRVIHFG----AGSDKGVAPGTAVLRR--QWLPTGTLLLVDSDLNDDFVVSDAD 119 (333)
+Q Consensus 53 kytqlcqylntltlavpynmrvihfg----agsdkgvapgtavlrr--qwlptgtlllvdsdlnddfvvsdad 119 (333)
+ .-+-+.+|++.+ -|-+||-=|+= -|.|.|-..||+|..- +-.-|.-|.+||-.+-.+.+.....
+T Consensus 690 ~~~T~~~yV~~~---~~~~~~sNHWvGTakmGtddGr~~GtaVVD~NTKVyGTdNLFVVDASI~P~mptgNp~ 759 (815)
+T AEO58137.1|AA3 690 STTTAEDYVDSY---DPSNRRSNHWMGTAKMGTDDGRSGGTAVVDLNTKVYGTDNLFVVDASIFPGMPTGNPS 759 (815)
+Confidence 334456777777 57788888874 3777788999999754 3344555777776666655554443
+
+
+No 10
+>ABQ42392.1|CE8|283-579|4.2e-119
+Probab=1.32 E-value=25 Score=20.29 Aligned_cols=26 Identities=27% Similarity=0.608 Sum_probs=20.8 Template_Neff=5.700
+
+Q 6W4H_A 86 APGTAVLRRQWLPTGTLLLVDSDLND 111 (333)
+Q Consensus 86 apgtavlrrqwlptgtlllvdsdlnd 111 (333)
+ +++...|-|-|-|.+..++.++.+.+
+T Consensus 208 ~~~~~yLGRpW~~~~~vvf~~t~~~~ 233 (290)
+T ABQ42392.1|CE8 208 PDGKVYLGRPWRPYSRVVFMNSYMGD 233 (290)
+Confidence 35678899999999888888887743
+
+
diff -r 4ac5d5a9b21c -r 860bd6f8f480 test-data/6W4H_B.hhr
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/6W4H_B.hhr Sat Aug 01 04:16:19 2020 -0400
@@ -0,0 +1,140 @@
+Query 6W4H_B
+Match_columns 121
+No_of_seqs 1 out of 1
+Neff 1
+Searched_HMMs 641
+Date Sat Aug 1 03:09:04 2020
+Command hhsearch -e 0.001 -i /Users/guerler/galaxy/database/files/000/dataset_687.dat -d hhdb -o /Users/guerler/galaxy/database/files/000/dataset_830.dat
+
+ No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
+ 1 CAR47543.1|CBM41|103-205|3.4e- 8.7 2.5 0.0038 19.7 0.0 27 76-102 41-67 (106)
+ 2 ACD98010.1|GH129||3-627 3.5 7.8 0.012 24.0 0.0 15 4-18 235-249 (657)
+ 3 ACI15933.1|GH162|22-524 3.3 8.6 0.013 23.0 0.0 59 5-72 186-244 (498)
+ 4 ACY95489.1|CBM14|33-88|9.4e-16 3.0 9.7 0.015 16.0 0.0 25 93-120 43-68 (81)
+ 5 ABN52033.1|CE3|36-223|2.1e-57 2.4 13 0.02 18.3 0.0 12 68-79 177-188 (195)
+ 6 AAI70505.1|CBM47|47-174|1.7e-4 2.2 13 0.021 16.9 0.0 12 77-88 106-117 (128)
+ 7 BAE59978.1|GT59|35-538|9.4e-14 2.2 14 0.021 20.8 0.0 28 45-73 3-30 (418)
+ 8 AJQ99710.1|GH13_18.hmm|7.1e-11 1.9 16 0.026 19.9 0.0 32 6-37 229-261 (343)
+ 9 AIQ50255.1|CBM77|PL1||627-727 1.7 19 0.03 16.8 0.0 14 17-30 30-43 (103)
+ 10 CAA44713.1|GT15|70-340|4.1e-13 1.7 19 0.03 18.9 0.0 16 5-20 228-243 (279)
+
+No 1
+>CAR47543.1|CBM41|103-205|3.4e-19
+Probab=8.71 E-value=2.5 Score=19.70 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=22.3 Template_Neff=6.300
+
+Q 6W4H_B 76 CDLKGKYVQIPTTCANDPVGFTLLKNT 102 (121)
+Q Consensus 76 cdlkgkyvqipttcandpvgftllknt 102 (121)
+ -|--|+|+.||..-....+||.+.++.
+T Consensus 41 ~D~yGay~~v~l~~~~~~vgfIv~~~~ 67 (106)
+T CAR47543.1|CBM 41 KDDYGAYADVPLKEGASKIGFIVRNGD 67 (106)
+Confidence 345799999999888888999998854
+
+
+No 2
+>ACD98010.1|GH129||3-627
+Probab=3.53 E-value=7.8 Score=23.98 Aligned_cols=15 Identities=47% Similarity=0.831 Sum_probs=12.4 Template_Neff=2.800
+
+Q 6W4H_B 4 VDAAKAYKDYLASSG 18 (121)
+Q Consensus 4 vdaakaykdylassg 18 (121)
+ ||.||+|+.|...+|
+T Consensus 235 vdmaK~YR~ya~e~G 249 (657)
+T ACD98010.1|GH1 235 VDMCKAYRSYANERG 249 (657)
+Confidence 788999999977665
+
+
+No 3
+>ACI15933.1|GH162|22-524
+Probab=3.28 E-value=8.6 Score=22.96 Aligned_cols=59 Identities=20% Similarity=0.374 Sum_probs=38.9 Template_Neff=3.000
+
+Q 6W4H_B 5 DAAKAYKDYLASSGGQPITNCVKMLCTHTGTGQAITVVTTPEANMDQESFGGASCCLYCRCHIDHPNP 72 (121)
+Q Consensus 5 daakaykdylassggqpitncvkmlcthtgtgqaitvvttpeanmdqesfggascclycrchidhpnp 72 (121)
+ +.||.|..|+.- -+.|.+++.-.-.|-=.|+|.+..-.+.+....+... |.|++|.|-.
+T Consensus 186 ~La~rw~~~~~~----m~~na~~iFY~g~G~I~aVt~I~d~~~~~~~~~Y~~~-----~~~~LdDPYE 244 (498)
+T ACI15933.1|GH1 186 DLAKRWQAWLDY----MANNAATIFYNGNGKIRAVTQIKDISAPVTPNNYQNE-----GTCYLDDPYE 244 (498)
+Confidence 456666666543 3456777776666666677777666666666666655 7889998864
+
+
+No 4
+>ACY95489.1|CBM14|33-88|9.4e-16
+Probab=2.96 E-value=9.7 Score=15.97 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=12.9 Template_Neff=6.300
+
+Q 6W4H_B 93 PVGFTLLKNTTVCTVCGMWKGY-GCSCDQ 120 (121)
+Q Consensus 93 pvgftllknttvctvcgmwkgy-gcscdq 120 (121)
+ |.|+..-..+..|.. ..-. .||||.
+T Consensus 43 p~g~~FD~~~~~C~~---~~~v~~C~~~~ 68 (81)
+T ACY95489.1|CBM 43 PPGLVFDPETQTCDW---PENVDDCSNCS 68 (81)
+Confidence 345555555555533 2223 588875
+
+
+No 5
+>ABN52033.1|CE3|36-223|2.1e-57
+Probab=2.35 E-value=13 Score=18.27 Aligned_cols=12 Identities=33% Similarity=0.700 Sum_probs=8.1 Template_Neff=5.600
+
+Q 6W4H_B 68 DHPNPKGFCDLK 79 (121)
+Q Consensus 68 dhpnpkgfcdlk 79 (121)
+ -|||..|+-.+.
+T Consensus 177 vHPn~~Gy~kmA 188 (195)
+T ABN52033.1|CE3 177 VHPNDAGYKKMA 188 (195)
+Confidence 489988865443
+
+
+No 6
+>AAI70505.1|CBM47|47-174|1.7e-41
+Probab=2.25 E-value=13 Score=16.85 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=9.4 Template_Neff=5.800
+
+Q 6W4H_B 77 DLKGKYVQIPTT 88 (121)
+Q Consensus 77 dlkgkyvqiptt 88 (121)
+ .++|+||.|--.
+T Consensus 106 ~~~GRYV~V~l~ 117 (128)
+T AAI70505.1|CBM 106 GMEGRYVRVVLP 117 (128)
+Confidence 589999987654
+
+
+No 7
+>BAE59978.1|GT59|35-538|9.4e-149
+Probab=2.21 E-value=14 Score=20.79 Aligned_cols=28 Identities=39% Similarity=0.606 Sum_probs=22.2 Template_Neff=4.400
+
+Q 6W4H_B 45 PEANMDQESFGGASCCLYCRCHIDHPNPK 73 (121)
+Q Consensus 45 peanmdqesfggascclycrchidhpnpk 73 (121)
+ ||.-|| |.|-=..+=-||+-+-++=+||
+T Consensus 3 pePYmD-EiFHIpQaQ~YC~G~f~~WDpK 30 (418)
+T BAE59978.1|GT5 3 PEPYMD-EIFHIPQAQRYCRGRFRQWDPK 30 (418)
+Confidence 667777 6677777888999998887776
+
+
+No 8
+>AJQ99710.1|GH13_18.hmm|7.1e-110|80-422
+Probab=1.91 E-value=16 Score=19.88 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=23.3 Template_Neff=4.200
+
+Q 6W4H_B 6 AAKAYKDYLASSGG-QPITNCVKMLCTHTGTGQ 37 (121)
+Q Consensus 6 aakaykdylassgg-qpitncvkmlcthtgtgq 37 (121)
+ -+++.++++++... +.-++++.+|-+|-|-|-
+T Consensus 229 ~~~~L~~W~~~~p~~~~~~~~fnflasHDGIGl 261 (343)
+T AJQ99710.1|GH1 229 NARALAKWLKSLPPPSDGTTYFNFLASHDGIGL 261 (343)
+Confidence 35667777776544 445789999999999874
+
+
+No 9
+>AIQ50255.1|CBM77|PL1||627-727
+Probab=1.67 E-value=19 Score=16.83 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=10.7 Template_Neff=2.600
+
+Q 6W4H_B 17 SGGQPITNCVKMLC 30 (121)
+Q Consensus 17 sggqpitncvkmlc 30 (121)
+ ..|...|.|.||--
+T Consensus 30 YnGltLTqcLKiEs 43 (103)
+T AIQ50255.1|CBM 30 YNGLTLTQCLKIES 43 (103)
+Confidence 35778899999853
+
+
+No 10
+>CAA44713.1|GT15|70-340|4.1e-134
+Probab=1.67 E-value=19 Score=18.92 Aligned_cols=16 Identities=44% Similarity=0.769 Sum_probs=11.2 Template_Neff=4.200
+
+Q 6W4H_B 5 DAAKAYKDYLASSGGQ 20 (121)
+Q Consensus 5 daakaykdylassggq 20 (121)
+ ++-.+|-+||.++||.
+T Consensus 228 ~~Y~~yF~~LD~~GGF 243 (279)
+T CAA44713.1|GT1 228 EAYRDYFEYLDKSGGF 243 (279)
+Confidence 3445667788888884
+
+
diff -r 4ac5d5a9b21c -r 860bd6f8f480 test-data/6W9C_A.hhr
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/6W9C_A.hhr Sat Aug 01 04:16:19 2020 -0400
@@ -0,0 +1,156 @@
+Query 6W9C_A
+Match_columns 313
+No_of_seqs 1 out of 1
+Neff 1
+Searched_HMMs 641
+Date Sat Aug 1 03:09:06 2020
+Command hhsearch -e 0.001 -i /Users/guerler/galaxy/database/files/000/dataset_686.dat -d hhdb -o /Users/guerler/galaxy/database/files/000/dataset_831.dat
+
+ No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
+ 1 ACY47587.1|GH78|346-867|5.6e-2 14.0 1.3 0.002 29.4 0.0 93 67-162 209-319 (496)
+ 2 AAO76127.1|GH143 5.8 4.2 0.0066 28.3 0.0 34 63-96 261-299 (574)
+ 3 AUO30192.1|GH149|2.4.1.-|0|1-1 5.1 5 0.0077 29.9 0.0 53 96-162 947-1007(1153)
+ 4 AHA42547.2|GH5_2 4.1 6.5 0.01 21.7 0.0 27 5-31 66-96 (97)
+ 5 AAW84061.1|PL10.hmm|1e-110|56- 3.6 7.5 0.012 24.2 0.0 86 57-144 37-135 (288)
+ 6 ADJ39760.1|GT63|1-340|1.6e-218 3.6 7.6 0.012 24.8 0.0 29 44-72 289-329 (340)
+ 7 ANS64378.1|GH43_22.hmm|8.3e-76 3.0 9.5 0.015 22.6 0.0 16 47-62 17-32 (244)
+ 8 ACY49347.1|GH105|46-385|1.1e-1 2.1 14 0.022 21.8 0.0 28 90-119 169-196 (329)
+ 9 ABG84856.1|PL8|420-695|7e-98 1.8 17 0.027 20.6 0.0 14 4-17 152-165 (263)
+ 10 AHG92795.1|GH43_29.hmm|2.4e-57 1.5 22 0.034 21.2 0.0 24 89-112 52-76 (279)
+
+No 1
+>ACY47587.1|GH78|346-867|5.6e-200
+Probab=14.01 E-value=1.3 Score=29.37 Aligned_cols=93 Identities=17% Similarity=0.196 Sum_probs=55.5 Template_Neff=7.200
+
+Q 6W9C_A 67 FEYYHTTDPSFLGRYMSALNHTKKWKYPQVNG--LT------SIKWAD-----N-----NCYLATALLTLQQIELKFNPP 128 (313)
+Q Consensus 67 feyyhttdpsflgrymsalnhtkkwkypqvng--lt------sikwad-----n-----ncylatalltlqqielkfnpp 128 (313)
+ --|.++-|.++|.++..++..--.|-..+++. -. -..|.+ + |++++-+|..+.+|.-....+
+T Consensus 209 ~~Y~~~GD~~~l~~~y~~~~~~l~~~~~~~~~~g~~~l~~~~~gDW~~~~~~~~~~~~~~a~~~~~l~~~a~lA~~LG~~ 288 (496)
+T ACY47587.1|GH7 209 DYYRYYGDKEFLEEQYPSMKRWLDYLESRADDDGNWGLWDTGFGDWLDDPPAGGTDLVATAYYYYSLRLMAELAEALGKT 288 (496)
+Confidence 34567889999988877776555555555533 11 255555 2 778888888888887777766
+
+
+Q 6W9C_A 129 ALQDAYYRARAGEAANFCALILAYCNKTVGELGD 162 (313)
+Q Consensus 129 alqdayyrarageaanfcalilaycnktvgelgd 162 (313)
+ +.. +.|+.+|.+... |+.-.+-|..-|...|
+T Consensus 289 ~~a-~~y~~~a~~lk~--a~~~~~~~~~~G~y~~ 319 (496)
+T ACY47587.1|GH7 289 EDA-ARYRALAERLKA--AFNKEFWDPDTGRYAD 319 (496)
+Confidence 553 345666555432 2222333444454544
+
+
+No 2
+>AAO76127.1|GH143
+Probab=5.76 E-value=4.2 Score=28.33 Aligned_cols=34 Identities=35% Similarity=0.699 Sum_probs=26.2 Template_Neff=2.500
+
+Q 6W9C_A 63 RVEAFEYYHTTDPSFLGRYMSALN-----HTKKWKYPQV 96 (313)
+Q Consensus 63 rveafeyyhttdpsflgrymsaln-----htkkwkypqv 96 (313)
+ ..+||.|||-.|-...|-+-.||- .-|.|.|+.+
+T Consensus 261 ~ykAFsyYhlpDGrvVgLWK~altsiS~D~GktW~y~p~ 299 (574)
+T AAO76127.1|GH1 261 GYKAFSYYHLPDGRVVGLWKHALTSISEDGGKTWSYNPL 299 (574)
+Confidence 358999999999988887776664 3467887654
+
+
+No 3
+>AUO30192.1|GH149|2.4.1.-|0|1-1154
+Probab=5.08 E-value=5 Score=29.90 Aligned_cols=53 Identities=36% Similarity=0.506 Sum_probs=33.5 Template_Neff=3.200
+
+Q 6W9C_A 96 VNGLTSIKWADNNCYLATALLTLQQIELKF-----NP---PALQDAYYRARAGEAANFCALILAYCNKTVGELGD 162 (313)
+Q Consensus 96 vngltsikwadnncylatalltlqqielkf-----np---palqdayyrarageaanfcalilaycnktvgelgd 162 (313)
+ -.||-||-|-- .+-.||..|..-++. ++ .+|.+.||+.|+|-. .||+-.+-|-
+T Consensus 947 YEGLGsIYWHM----VSKLLLAvqE~~~~Ai~~~~~~~~~~~L~~~YyeIr~GIG----------~~KsPe~YGA 1007 (1153)
+T AUO30192.1|GH1 947 YEGLGSIYWHM----VSKLLLAVQENCLDAIEQGADSEVIGKLADHYYEIRAGIG----------FNKSPELYGA 1007 (1153)
+Confidence 46999999952 333444444433322 32 468999999999954 3566665554
+
+
+No 4
+>AHA42547.2|GH5_2
+Probab=4.12 E-value=6.5 Score=21.71 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=19.9 Template_Neff=1.800
+
+Q 6W9C_A 5 VFTTVDN----INLHTQVVDMSMTYGQQFGP 31 (313)
+Q Consensus 5 vfttvdn----inlhtqvvdmsmtygqqfgp 31 (313)
+ =||||++ -+|...|+..+-.|.-|||.
+T Consensus 66 gfttVatat~nc~lYiyvkqAp~Sf~lqFgs 96 (97)
+T AHA42547.2|GH5 66 GFTTVATATMNCALYIYVKQAPSSFTLQFGS 96 (97)
+Confidence 3777775 45667788888888888873
+
+
+No 5
+>AAW84061.1|PL10.hmm|1e-110|56-346
+Probab=3.63 E-value=7.5 Score=24.18 Aligned_cols=86 Identities=29% Similarity=0.338 Sum_probs=59.3 Template_Neff=4.300
+
+Q 6W9C_A 57 PNDDT---LRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYP-----QVNGL-----TSIKWADNNCYLATALLTLQQIEL 123 (313)
+Q Consensus 57 pnddt---lrveafeyyhttdpsflgrymsalnhtkkwkyp-----qvngl-----tsikwadnncylatalltlqqiel 123 (313)
+ .|+-| ||.-|--|-.|.|+.+..-....|+..-+-.|| |+--+ ..|...||- +.-.|..|+.|.-
+T Consensus 37 DN~AT~tei~~LA~~y~~t~~~~Yr~A~~kGl~yLL~aQY~nGGWPQ~yP~~~~Y~~~ITfNDdA--M~~vl~lL~di~~ 114 (288)
+T AAW84061.1|PL1 37 DNGATTTEIRFLARAYKATGDERYRDAALKGLDYLLAAQYPNGGWPQFYPLRGGYHDHITFNDDA--MVNVLELLRDIAE 114 (288)
+Confidence 45544 566677788888888887777777766555543 33322 246666664 4556777788887
+
+
+Q 6W9C_A 124 KFNPPALQDAYYRARAGEAAN 144 (313)
+Q Consensus 124 kfnppalqdayyrarageaan 144 (313)
+ +-+|-++-|+-+|+||.+|.+
+T Consensus 115 ~~~~f~fvd~~~r~ra~~A~~ 135 (288)
+T AAW84061.1|PL1 115 GKPPFDFVDAARRARARQAVD 135 (288)
+Confidence 777778888889999988765
+
+
+No 6
+>ADJ39760.1|GT63|1-340|1.6e-218
+Probab=3.62 E-value=7.6 Score=24.76 Aligned_cols=29 Identities=34% Similarity=0.527 Sum_probs=23.1 Template_Neff=1.400
+
+Q 6W9C_A 44 PHNSHEGKTFYV------------LPNDDTLRVEAFEYYHT 72 (313)
+Q Consensus 44 phnshegktfyv------------lpnddtlrveafeyyht 72 (313)
+ .||--+...||| +.|||.||.|..+|-|.
+T Consensus 289 ~~~i~~~~~fyv~nr~elid~in~~k~~~~~r~e~l~~qh~ 329 (340)
+T ADJ39760.1|GT6 289 KHRIINDARFYVNNRAELIDRVNELKHSDVLRKEMLSIQHD 329 (340)
+Confidence 366667778887 56889999999999885
+
+
+No 7
+>ANS64378.1|GH43_22.hmm|8.3e-76|54-270
+Probab=3.00 E-value=9.5 Score=22.64 Aligned_cols=16 Identities=31% Similarity=0.746 Sum_probs=13.6 Template_Neff=5.100
+
+Q 6W9C_A 47 SHEGKTFYVLPNDDTL 62 (313)
+Q Consensus 47 shegktfyvlpnddtl 62 (313)
+ |++|.+||+++-|+.+
+T Consensus 17 s~dgdkfyiiATDL~i 32 (244)
+T ANS64378.1|GH4 17 SPDGDKFYIIATDLRI 32 (244)
+Confidence 7899999999988654
+
+
+No 8
+>ACY49347.1|GH105|46-385|1.1e-131
+Probab=2.15 E-value=14 Score=21.82 Aligned_cols=28 Identities=29% Similarity=0.627 Sum_probs=22.0 Template_Neff=6.200
+
+Q 6W9C_A 90 KWKYPQVNGLTSIKWADNNCYLATALLTLQ 119 (313)
+Q Consensus 90 kwkypqvngltsikwadnncylatalltlq 119 (313)
+ .|--| .|...+-|+-.|...+.||..+-
+T Consensus 169 ~wa~~--t~~s~~fW~RgnGW~~~aL~~~L 196 (329)
+T ACY49347.1|GH1 169 NWADP--TGGSPAFWGRGNGWVAMALVDVL 196 (329)
+Confidence 34444 78899999999999999887653
+
+
+No 9
+>ABG84856.1|PL8|420-695|7e-98
+Probab=1.83 E-value=17 Score=20.63 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=10.3 Template_Neff=6.200
+
+Q 6W9C_A 4 KVFTTVDNINLHTQ 17 (313)
+Q Consensus 4 kvfttvdninlhtq 17 (313)
+ .|.|||||-.+...
+T Consensus 152 ~v~TTi~qr~~~~~ 165 (263)
+T ABG84856.1|PL8 152 PVETTIEQRKLNGK 165 (263)
+Confidence 46788888877665
+
+
+No 10
+>AHG92795.1|GH43_29.hmm|2.4e-57|84-380
+Probab=1.51 E-value=22 Score=21.20 Aligned_cols=24 Identities=17% Similarity=0.476 Sum_probs=16.6 Template_Neff=4.100
+
+Q 6W9C_A 89 KKWK-YPQVNGLTSIKWADNNCYLA 112 (313)
+Q Consensus 89 kkwk-ypqvngltsikwadnncyla 112 (313)
+ +.|+ ++.+-.++.++||+++.+-+
+T Consensus 52 ~nWtdhg~~l~~~~F~WA~~~AwA~ 76 (279)
+T AHG92795.1|GH4 52 VNWTDHGSVLSPKDFSWAKGDAWAS 76 (279)
+Confidence 4554 45677788999998665543
+
+
diff -r 4ac5d5a9b21c -r 860bd6f8f480 test-data/6W9Q_A.hhr
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/6W9Q_A.hhr Sat Aug 01 04:16:19 2020 -0400
@@ -0,0 +1,140 @@
+Query 6W9Q_A
+Match_columns 123
+No_of_seqs 1 out of 1
+Neff 1
+Searched_HMMs 641
+Date Sat Aug 1 03:09:07 2020
+Command hhsearch -e 0.001 -i /Users/guerler/galaxy/database/files/000/dataset_685.dat -d hhdb -o /Users/guerler/galaxy/database/files/000/dataset_832.dat
+
+ No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
+ 1 AJP22991.1|PL8_1.hmm|1.4e-102| 4.4 6 0.0093 22.3 0.0 21 37-57 7-27 (271)
+ 2 ACE81431.1|GH5_15.hmm|2.3e-124 4.2 6.2 0.0097 22.5 0.0 31 29-61 223-253 (300)
+ 3 CAG81347.1|CBM19|426-466|7e-13 3.5 8 0.012 16.1 0.0 9 21-29 33-41 (44)
+ 4 ATY34423.1|PL10_2.hmm|5.1e-141 2.8 10 0.016 21.0 0.0 58 13-70 168-226 (275)
+ 5 AAK94929.1|CBM55|16-61|2.6e-25 2.3 13 0.02 15.5 0.0 11 19-29 25-35 (46)
+ 6 ABS47913.1|PL8_2.hmm|2.6e-99|6 2.0 15 0.024 19.3 0.0 17 59-78 57-73 (248)
+ 7 SCV09658.1|GH137 2.0 15 0.024 20.7 0.0 31 37-69 210-248 (367)
+ 8 EEO46747.1|CBM58|202-318|3.8e- 2.0 16 0.025 17.7 0.0 12 93-104 37-48 (116)
+ 9 QDM21448.1|AA3||6-537 1.7 19 0.029 21.2 0.0 33 50-83 80-112 (644)
+ 10 CBJ37966.1|GH28|235-654|7.7e-4 1.7 19 0.029 18.3 0.0 17 18-34 3-19 (345)
+
+No 1
+>AJP22991.1|PL8_1.hmm|1.4e-102|443-692
+Probab=4.39 E-value=6 Score=22.31 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=16.8 Template_Neff=2.700
+
+Q 6W9Q_A 37 NALAYYNTTKGGRFVLALLSD 57 (123)
+Q Consensus 37 nalayynttkggrfvlallsd 57 (123)
+ .-++|||..++=-|.|.+-|+
+T Consensus 7 Dkl~y~Na~~dF~FaLSm~S~ 27 (271)
+T AJP22991.1|PL8 7 DKLAYYNAEKDFAFGLSMHSK 27 (271)
+Confidence 357899998888888888765
+
+
+No 2
+>ACE81431.1|GH5_15.hmm|2.3e-124|99-401
+Probab=4.23 E-value=6.2 Score=22.52 Aligned_cols=31 Identities=32% Similarity=0.473 Sum_probs=17.3 Template_Neff=2.300
+
+Q 6W9Q_A 29 TQTACTDDNALAYYNTTKGGRFVLALLSDLQDL 61 (123)
+Q Consensus 29 tqtactddnalayynttkggrfvlallsdlqdl 61 (123)
+ -+++|+||- .---.+--|.+-|..=+++|+-
+T Consensus 223 i~tsCtd~~--~~~~p~ivGEWSLsvpdn~q~t 253 (300)
+T ACE81431.1|GH5 223 IETSCTDDV--NTHGPTIVGEWSLSVPDNVQDT 253 (300)
+Confidence 467888882 1111233466667666666653
+
+
+No 3
+>CAG81347.1|CBM19|426-466|7e-13
+Probab=3.47 E-value=8 Score=16.11 Aligned_cols=9 Identities=44% Similarity=0.892 Sum_probs=6.1 Template_Neff=3.400
+
+Q 6W9Q_A 21 QMSCAAGTT 29 (123)
+Q Consensus 21 qmscaagtt 29 (123)
+ .+.|++|++
+T Consensus 33 ~~~Cp~gt~ 41 (44)
+T CAG81347.1|CBM 33 TTECPSGTT 41 (44)
+Confidence 467777765
+
+
+No 4
+>ATY34423.1|PL10_2.hmm|5.1e-141|81-355
+Probab=2.82 E-value=10 Score=21.01 Aligned_cols=58 Identities=19% Similarity=0.363 Sum_probs=37.2 Template_Neff=2.400
+
+Q 6W9Q_A 13 ELSPVALRQMSCAAGTTQTACTD-DNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 70 (123)
+Q Consensus 13 elspvalrqmscaagttqtactd-dnalayynttkggrfvlallsdlqdlkwarfpksd 70 (123)
+ ++.|+--|-.--+|=+++|.|+. .+-+-||.-|..-+|.-.+=..+.=|.-.++|...
+T Consensus 168 dl~Pa~ARtyEP~a~~~htTa~~i~~l~~fY~lTgD~kyLaripeAi~wLesvk~p~~~ 226 (275)
+T ATY34423.1|PL1 168 DLKPAGARTYEPAALATHTTAANIRQLMDFYELTGDKKYLARIPEAIDWLESVKLPPDQ 226 (275)
+Confidence 56777777666565555555554 34567888888877765555545555556677766
+
+
+No 5
+>AAK94929.1|CBM55|16-61|2.6e-25
+Probab=2.30 E-value=13 Score=15.48 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=7.6 Template_Neff=2.700
+
+Q 6W9Q_A 19 LRQMSCAAGTT 29 (123)
+Q Consensus 19 lrqmscaagtt 29 (123)
+ -.+|+|.+|+.
+T Consensus 25 ~~~~~C~~gtv 35 (46)
+T AAK94929.1|CBM 25 GKPMKCPGGTV 35 (46)
+Confidence 35678888863
+
+
+No 6
+>ABS47913.1|PL8_2.hmm|2.6e-99|635-880
+Probab=2.03 E-value=15 Score=19.29 Aligned_cols=17 Identities=41% Similarity=0.851 Sum_probs=11.8 Template_Neff=4.100
+
+Q 6W9Q_A 59 QDLKWARFPKSDGTGTIYTE 78 (123)
+Q Consensus 59 qdlkwarfpksdgtgtiyte 78 (123)
+ .-..|.|+| ||-||...
+T Consensus 57 ~GWDWNR~P---GtTtihLP 73 (248)
+T ABS47913.1|PL8 57 EGWDWNRYP---GTTTIHLP 73 (248)
+Confidence 457899998 56666543
+
+
+No 7
+>SCV09658.1|GH137
+Probab=2.03 E-value=15 Score=20.73 Aligned_cols=31 Identities=35% Similarity=0.761 Sum_probs=22.2 Template_Neff=2.600
+
+Q 6W9Q_A 37 NALAYYNTT--------KGGRFVLALLSDLQDLKWARFPKS 69 (123)
+Q Consensus 37 nalayyntt--------kggrfvlallsdlqdlkwarfpks 69 (123)
+ .-.-|||.. ++-|.-+|.-.|+ +.|.||++.
+T Consensus 210 ~FvmyYNA~g~s~~~~~k~EriGmAvS~Dm--~~W~Ry~~n 248 (367)
+T SCV09658.1|GH1 210 PFVMYYNAKGDSLKNNKKGERIGMAVSDDM--VHWKRYGKN 248 (367)
+Confidence 345677754 5578888887777 469999875
+
+
+No 8
+>EEO46747.1|CBM58|202-318|3.8e-68
+Probab=1.97 E-value=16 Score=17.68 Aligned_cols=12 Identities=50% Similarity=0.949 Sum_probs=8.9 Template_Neff=1.700
+
+Q 6W9Q_A 93 PKVKYLYFIKGL 104 (123)
+Q Consensus 93 pkvkylyfikgl 104 (123)
+ ...|||||-.|+
+T Consensus 37 ~~akYLY~Gegi 48 (116)
+T EEO46747.1|CBM 37 DGAKYLYFGEGI 48 (116)
+Confidence 345999997765
+
+
+No 9
+>QDM21448.1|AA3||6-537
+Probab=1.71 E-value=19 Score=21.21 Aligned_cols=33 Identities=24% Similarity=0.487 Sum_probs=15.6 Template_Neff=4.300
+
+Q 6W9Q_A 50 FVLALLSDLQDLKWARFPKSDGTGTIYTELEPPC 83 (123)
+Q Consensus 50 fvlallsdlqdlkwarfpksdgtgtiyteleppc 83 (123)
+ ||--...|-++.+-...--.-..|++|+ +.||-
+T Consensus 80 fv~hy~d~~~~~r~~~~t~~~~~G~~yv-~~pP~ 112 (644)
+T QDM21448.1|AA3 80 FVRHYADDTRQARDPKYTYRTPDGGYYV-LDPPA 112 (644)
+Confidence 4444444333333222222345677887 66653
+
+
+No 10
+>CBJ37966.1|GH28|235-654|7.7e-46
+Probab=1.70 E-value=19 Score=18.26 Aligned_cols=17 Identities=35% Similarity=0.651 Sum_probs=7.9 Template_Neff=6.800
+
+Q 6W9Q_A 18 ALRQMSCAAGTTQTACT 34 (123)
+Q Consensus 18 alrqmscaagttqtact 34 (123)
+ .|.|-.|.|..-..+|.
+T Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (345)
+T CBJ37966.1|GH2 3 NLAQTACTASWAAAACA 19 (345)
+Confidence 34444554444444443
+
+
diff -r 4ac5d5a9b21c -r 860bd6f8f480 test-data/6WEY_A.hhr
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/6WEY_A.hhr Sat Aug 01 04:16:19 2020 -0400
@@ -0,0 +1,140 @@
+Query 6WEY_A
+Match_columns 193
+No_of_seqs 1 out of 1
+Neff 1
+Searched_HMMs 641
+Date Sat Aug 1 03:09:15 2020
+Command hhsearch -e 0.001 -i /Users/guerler/galaxy/database/files/000/dataset_683.dat -d hhdb -o /Users/guerler/galaxy/database/files/000/dataset_834.dat
+
+ No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
+ 1 O29635_ARCFU/4-168 7.5 3 0.0047 19.8 0.0 18 44-61 61-78 (170)
+ 2 AAO69110.1|GH13_26.hmm|1.3e-96 7.0 3.3 0.0051 25.1 0.0 51 69-119 6-56 (300)
+ 3 ADI28148.1|GH4|6-186|8.8e-81 3.1 9.2 0.014 20.2 0.0 21 22-42 124-144 (179)
+ 4 ADH08008.1|GH5_48.hmm|7.7e-154 2.6 11 0.018 22.3 0.0 31 107-137 46-77 (316)
+ 5 AAZ26198.1|GH13_27.hmm|4.2e-15 2.2 14 0.021 21.9 0.0 30 125-154 222-251 (319)
+ 6 AAM37385.1|GH121|19-1450|0 2.2 14 0.022 25.7 0.0 64 11-76 188-256 (1400)
+ 7 CAA37453.1|CBM25|698-758|0.095 2.1 14 0.022 16.9 0.0 38 38-76 13-50 (78)
+ 8 BAF60961.1|GT26|55-224|9.8e-76 1.9 16 0.026 18.1 0.0 19 20-38 89-107 (171)
+ 9 ACS87816.1|GT40|137-346|7.4e-9 1.9 17 0.026 20.2 0.0 23 44-66 37-59 (212)
+ 10 ADV06884.1|GH35|10-328|8.8e-12 1.6 20 0.031 19.6 0.0 31 38-71 251-281 (301)
+
+No 1
+>O29635_ARCFU/4-168
+Probab=7.50 E-value=3 Score=19.76 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=13.2 Template_Neff=9.500
+
+Q 6WEY_A 44 LKHGGGVAGALNKATNNA 61 (193)
+Q Consensus 44 lkhgggvagalnkatnna 61 (193)
+ ...+.|.++|+|++...|
+T Consensus 61 ~~~n~G~~~A~n~g~~~a 78 (170)
+T O29635_ARCFU/4 61 RPRNRGKAGARNAGLRAA 78 (170)
+Confidence 344558999999887665
+
+
+No 2
+>AAO69110.1|GH13_26.hmm|1.3e-96|23-309
+Probab=6.97 E-value=3.3 Score=25.12 Aligned_cols=51 Identities=31% Similarity=0.444 Sum_probs=36.3 Template_Neff=4.200
+
+Q 6WEY_A 69 YIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVVNNKKGGEEDIQLLKSAY 119 (193)
+Q Consensus 69 yiatngplkvggscvlsghnlakhclhvvgpnvvnnkkggeediqllksay 119 (193)
+ |++.-|--.+=-|-++...-=..|...|+-|+-+|..-|||+..+.|..+.
+T Consensus 6 Yl~~LGishlY~SPil~A~pGStHGYDvvDp~~inpelGge~gl~~L~~~l 56 (300)
+T AAO69110.1|GH1 6 YLADLGISHLYASPILTARPGSTHGYDVVDPTRINPELGGEEGLRRLAAAL 56 (300)
+Confidence 444333333334555555555679999999999999999999988876654
+
+
+No 3
+>ADI28148.1|GH4|6-186|8.8e-81
+Probab=3.07 E-value=9.2 Score=20.22 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=16.8 Template_Neff=5.400
+
+Q 6WEY_A 22 DIVEEAKKVKPTTVVVNAANV 42 (193)
+Q Consensus 22 diveeakkvkpttvvvnaanv 42 (193)
+ ||.+..++.-|...++|.+|-
+T Consensus 124 ~ia~~ie~~~P~AwliNytNP 144 (179)
+T ADI28148.1|GH4 124 DIAKDMEEYCPDAWLLNYTNP 144 (179)
+Confidence 567777778899999998874
+
+
+No 4
+>ADH08008.1|GH5_48.hmm|7.7e-154|75-403
+Probab=2.59 E-value=11 Score=22.34 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=23.7 Template_Neff=2.900
+
+Q 6WEY_A 107 GGEEDIQLLKSAYENFNQ-HEEVLLAPLLSAG 137 (193)
+Q Consensus 107 ggeediqllksayenfnq-heevllapllsag 137 (193)
+ --++|+++||.....+.+ ...|.|+||-.-|
+T Consensus 46 Lv~~Dl~~Lk~~LD~A~~aglKVVltpLSLPg 77 (316)
+T ADH08008.1|GH5 46 LVKADLAKLKAVLDAAHAAGLKVVLTPLSLPG 77 (316)
+Confidence 357899999999988765 4678888875444
+
+
+No 5
+>AAZ26198.1|GH13_27.hmm|4.2e-155|41-357
+Probab=2.23 E-value=14 Score=21.92 Aligned_cols=30 Identities=30% Similarity=0.497 Sum_probs=23.7 Template_Neff=2.600
+
+Q 6WEY_A 125 HEEVLLAPLLSAGIFGADDPPIIHSLRVCV 154 (193)
+Q Consensus 125 heevllapllsagifgaddppiihslrvcv 154 (193)
+ .++..|.|.|..--.||-|-|...++|-..
+T Consensus 222 ~y~~FL~PyL~~T~~~AYDFPLf~tir~Af 251 (319)
+T AAZ26198.1|GH1 222 DYELFLQPYLQETRHGAYDFPLFNTIRKAF 251 (319)
+Confidence 456778999999999999999887766543
+
+
+No 6
+>AAM37385.1|GH121|19-1450|0
+Probab=2.18 E-value=14 Score=25.65 Aligned_cols=64 Identities=31% Similarity=0.440 Sum_probs=43.2 Template_Neff=2.400
+
+Q 6WEY_A 11 LTDNNVYIKNADIVEEAKKVKPTTVVVNAANVYLKHGGGV-----AGALNKATNNAMQVESDDYIATNGPL 76 (193)
+Q Consensus 11 ltdnnvyiknadiveeakkvkpttvvvnaanvylkhgggv-----agalnkatnnamqvesddyiatngpl 76 (193)
+ +|+|||-+.|-.|- ...-.++|+.+-|+.-|-.|+.|- -.+.|+.|.-.-....|.+.+..|.|
+T Consensus 188 IT~nNv~Vtnl~v~--~~~~a~~t~~l~a~SP~a~~~~g~eLtG~~~~~N~lTti~pRlsGdgf~~~g~~L 256 (1400)
+T AAM37385.1|GH1 188 ITYNNVAVANLTVS--STGGAPHTVTLQAASPYAQHGDGNELTGRVDAKNNLTTIFPRLSGDGFTVSGGRL 256 (1400)
+Confidence 58999988876553 344567889999999999998752 34555555555555555555555544
+
+
+No 7
+>CAA37453.1|CBM25|698-758|0.095
+Probab=2.14 E-value=14 Score=16.91 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=26.5 Template_Neff=5.000
+
+Q 6WEY_A 38 NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 76 (193)
+Q Consensus 38 naanvylkhgggvagalnkatnnamqvesddyiatngpl 76 (193)
+ ++.++||-.|-|-. +-..+..-+|+-+.+.+....=+|
+T Consensus 13 g~~~vylHyg~~~~-~Wt~vp~~~M~~~~~g~~~~TI~~ 50 (78)
+T CAA37453.1|CBM 13 GWSNVYLHYGYGGG-SWTNVPGVAMEKACDGWWKKTIDL 50 (78)
+Confidence 56778887754433 777788889998888865554444
+
+
+No 8
+>BAF60961.1|GT26|55-224|9.8e-76
+Probab=1.90 E-value=16 Score=18.13 Aligned_cols=19 Identities=21% Similarity=0.386 Sum_probs=14.3 Template_Neff=6.300
+
+Q 6WEY_A 20 NADIVEEAKKVKPTTVVVN 38 (193)
+Q Consensus 20 nadiveeakkvkpttvvvn 38 (193)
+ +.+++++.++.+|+-|+|-
+T Consensus 89 ~~~i~~~I~~~~~d~l~vg 107 (171)
+T BAF60961.1|GT2 89 EEAIIERINASGPDILFVG 107 (171)
+Confidence 5677788888888877764
+
+
+No 9
+>ACS87816.1|GT40|137-346|7.4e-95
+Probab=1.85 E-value=17 Score=20.18 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=18.6 Template_Neff=2.900
+
+Q 6WEY_A 44 LKHGGGVAGALNKATNNAMQVES 66 (193)
+Q Consensus 44 lkhgggvagalnkatnnamqves 66 (193)
+ -.+.-|-|||+|.....|+|-.-
+T Consensus 37 ~p~N~GYA~AvN~GlR~AL~~p~ 59 (212)
+T ACS87816.1|GT4 37 FPENIGYAGAVNEGLRHALSFPF 59 (212)
+Confidence 34567999999999999998654
+
+
+No 10
+>ADV06884.1|GH35|10-328|8.8e-129
+Probab=1.61 E-value=20 Score=19.64 Aligned_cols=31 Identities=42% Similarity=0.473 Sum_probs=22.2 Template_Neff=5.600
+
+Q 6WEY_A 38 NAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 71 (193)
+Q Consensus 38 naanvylkhgggvagalnkatnnamqvesddyia 71 (193)
+ +..|.|+-|||-=-|.+|-+.. .+.|-||-|
+T Consensus 251 ~~~n~YM~hGGTNfg~~~g~~~---~~tsYDy~A 281 (301)
+T ADV06884.1|GH3 251 TSVNYYMFHGGTNFGFTNGANF---QTTSYDYDA 281 (301)
+Confidence 5678999999987777665544 556777744
+
+
diff -r 4ac5d5a9b21c -r 860bd6f8f480 test-data/6WJI_A.hhr
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/6WJI_A.hhr Sat Aug 01 04:16:19 2020 -0400
@@ -0,0 +1,140 @@
+Query 6WJI_A
+Match_columns 108
+No_of_seqs 1 out of 1
+Neff 1
+Searched_HMMs 641
+Date Sat Aug 1 03:09:16 2020
+Command hhsearch -e 0.001 -i /Users/guerler/galaxy/database/files/000/dataset_682.dat -d hhdb -o /Users/guerler/galaxy/database/files/000/dataset_835.dat
+
+ No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
+ 1 ADJ39760.1|GT63|1-340|1.6e-218 12.6 1.5 0.0023 26.0 0.0 24 81-104 49-72 (340)
+ 2 ABV04693.1|GH104|4-149|1.2e-65 6.8 3.4 0.0053 20.8 0.0 26 71-96 65-90 (144)
+ 3 ADF51355.1|GH89|74-731|1.3e-27 4.6 5.6 0.0088 23.9 0.0 43 51-93 168-217 (663)
+ 4 AOH85032.1|PL22_2.hmm|9.2e-63| 3.3 8.3 0.013 20.7 0.0 23 58-80 200-228 (238)
+ 5 AFR03652.1|PL2_1.hmm|0|24-554 3.1 9.1 0.014 22.4 0.0 22 2-23 232-253 (529)
+ 6 AAM43285.1|GH43_9.hmm|1.1e-139 3.1 9.1 0.014 21.0 0.0 16 27-42 7-22 (292)
+ 7 ADB10624.1|GH53|89-472|9e-82 2.9 9.8 0.015 20.6 0.0 46 53-106 127-173 (341)
+ 8 ABS49747.1|PL2|17-549|2.7e-271 2.9 10 0.016 22.4 0.0 33 2-34 234-270 (530)
+ 9 ADL41529.1|CBM27|38-215|8.3e-5 2.8 10 0.016 18.6 0.0 21 65-85 143-163 (166)
+ 10 CCH00347.1|GH43_15.hmm|2e-122| 2.7 11 0.017 20.5 0.0 24 36-59 37-60 (276)
+
+No 1
+>ADJ39760.1|GT63|1-340|1.6e-218
+Probab=12.60 E-value=1.5 Score=25.95 Aligned_cols=24 Identities=29% Similarity=0.474 Sum_probs=21.0 Template_Neff=1.400
+
+Q 6WJI_A 81 IKLDDKDPNFKDQVILLNKHIDAY 104 (108)
+Q Consensus 81 iklddkdpnfkdqvillnkhiday 104 (108)
+ +..||-|||--|.||..|..|.-|
+T Consensus 49 ~~fd~vd~n~ydr~~vvn~s~nf~ 72 (340)
+T ADJ39760.1|GT6 49 KSFDEVDVNDYDRLIVVNSSINFF 72 (340)
+Confidence 568999999999999999888755
+
+
+No 2
+>ABV04693.1|GH104|4-149|1.2e-65
+Probab=6.81 E-value=3.4 Score=20.75 Aligned_cols=26 Identities=38% Similarity=0.603 Sum_probs=22.8 Template_Neff=4.400
+
+Q 6WJI_A 71 SGTWLTYTGAIKLDDKDPNFKDQVIL 96 (108)
+Q Consensus 71 sgtwltytgaiklddkdpnfkdqvil 96 (108)
+ +.||-.|...++|.|-.|...|++.+
+T Consensus 65 ~~tW~~~~~~l~l~dFsP~~QD~~A~ 90 (144)
+T ABV04693.1|GH1 65 SRTWDEYRKQLGLPDFSPESQDRVAL 90 (144)
+Confidence 45899999999999999999999764
+
+
+No 3
+>ADF51355.1|GH89|74-731|1.3e-276
+Probab=4.59 E-value=5.6 Score=23.93 Aligned_cols=43 Identities=28% Similarity=0.493 Sum_probs=33.7 Template_Neff=4.700
+
+Q 6WJI_A 51 FAPSASAFFGMSRIG-------MEVTPSGTWLTYTGAIKLDDKDPNFKDQ 93 (108)
+Q Consensus 51 fapsasaffgmsrig-------mevtpsgtwltytgaiklddkdpnfkdq 93 (108)
+ ..|-..+|.|+---+ ..|++-|.|-.+...--||..||-|..-
+T Consensus 168 MtPVLPaF~G~VP~~f~~~~P~a~i~~~g~W~gF~~~~~LdP~dplF~~I 217 (663)
+T ADF51355.1|GH8 168 MTPVLPAFAGHVPAAFKEKNPDAKITRQGNWGGFDRPYFLDPEDPLFAKI 217 (663)
+Confidence 356677787775443 4788999999999988999999998753
+
+
+No 4
+>AOH85032.1|PL22_2.hmm|9.2e-63|205-432
+Probab=3.34 E-value=8.3 Score=20.73 Aligned_cols=23 Identities=30% Similarity=0.764 Sum_probs=15.6 Template_Neff=2.600
+
+Q 6WJI_A 58 FFGMSRIG------MEVTPSGTWLTYTGA 80 (108)
+Q Consensus 58 ffgmsrig------mevtpsgtwltytga 80 (108)
+ ...|++-. ...||.|.|+.++.-
+T Consensus 200 LVnm~~H~Y~lEPN~~FtPDgkw~iFrsN 228 (238)
+T AOH85032.1|PL2 200 LVNMSRHNYRLEPNVHFTPDGKWIIFRSN 228 (238)
+Confidence 34566543 346899999998764
+
+
+No 5
+>AFR03652.1|PL2_1.hmm|0|24-554
+Probab=3.10 E-value=9.1 Score=22.39 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=18.3 Template_Neff=1.400
+
+Q 6WJI_A 2 PRQKRTATKAYNVTQAFGRRGP 23 (108)
+Q Consensus 2 prqkrtatkaynvtqafgrrgp 23 (108)
+ ||.|.|.--.|..||+..|..+
+T Consensus 232 prdkktglgvyqftqalkr~et 253 (529)
+T AFR03652.1|PL2 232 PRDKKTGLGVYQFTQALKRAET 253 (529)
+Confidence 7889999999999999877543
+
+
+No 6
+>AAM43285.1|GH43_9.hmm|1.1e-139|60-332
+Probab=3.10 E-value=9.1 Score=21.01 Aligned_cols=16 Identities=38% Similarity=0.981 Sum_probs=14.0 Template_Neff=2.900
+
+Q 6WJI_A 27 QGNFGDQELIRQGTDY 42 (108)
+Q Consensus 27 qgnfgdqelirqgtdy 42 (108)
+ .|+..|..++|.|.||
+T Consensus 7 ~Gd~pDPsilRdG~dY 22 (292)
+T AAM43285.1|GH4 7 AGDYPDPSILRDGDDY 22 (292)
+Confidence 4778899999999988
+
+
+No 7
+>ADB10624.1|GH53|89-472|9e-82
+Probab=2.93 E-value=9.8 Score=20.62 Aligned_cols=46 Identities=28% Similarity=0.414 Sum_probs=32.8 Template_Neff=4.700
+
+Q 6WJI_A 53 PSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDP-NFKDQVILLNKHIDAYKT 106 (108)
+Q Consensus 53 psasaffgmsrigmevtpsgtwltytgaiklddkdp-nfkdqvillnkhidaykt 106 (108)
+ -.+...-.|-.||-|+++.=-| -+.+.+ +|..-.-|||.-|+|-|.
+T Consensus 127 ~~~Gv~pdmVQVGNEin~GmlW--------p~G~~~~~~~~~a~LlnaG~~AVr~ 173 (341)
+T ADB10624.1|GH5 127 KDAGVTPDMVQVGNEINNGMLW--------PDGKSSGNWDNLAQLLNAGIKAVRE 173 (341)
+Confidence 4455566788899998876555 233444 788888899998888764
+
+
+No 8
+>ABS49747.1|PL2|17-549|2.7e-271
+Probab=2.85 E-value=10 Score=22.35 Aligned_cols=33 Identities=30% Similarity=0.546 Sum_probs=26.2 Template_Neff=2.800
+
+Q 6WJI_A 2 PRQKRTATKAYNVTQAFGRRG-P---EQTQGNFGDQE 34 (108)
+Q Consensus 2 prqkrtatkaynvtqafgrrg-p---eqtqgnfgdqe 34 (108)
+ +|++.|.--.|..+|...|.. | .+|+.-|||..
+T Consensus 234 aR~peTGl~vYQFs~p~~r~~~P~dd~~T~S~~GDRA 270 (530)
+T ABS49747.1|PL2 234 ARNPETGLPVYQFSSPLKRQPIPTDDNDTQSWFGDRA 270 (530)
+Confidence 577888888999999987665 4 47889999864
+
+
+No 9
+>ADL41529.1|CBM27|38-215|8.3e-50
+Probab=2.85 E-value=10 Score=18.61 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=15.0 Template_Neff=4.500
+
+Q 6WJI_A 65 GMEVTPSGTWLTYTGAIKLDD 85 (108)
+Q Consensus 65 gmevtpsgtwltytgaikldd 85 (108)
+ +|.+---|.-+.|+|.|-||.
+T Consensus 143 ~l~i~I~G~~~~y~GpIYiDN 163 (166)
+T ADL41529.1|CBM 143 QLVIGIAGQNTNYKGPIYIDN 163 (166)
+Confidence 344445677888999998875
+
+
+No 10
+>CCH00347.1|GH43_15.hmm|2e-122|40-315
+Probab=2.66 E-value=11 Score=20.47 Aligned_cols=24 Identities=29% Similarity=0.714 Sum_probs=17.4 Template_Neff=2.300
+
+Q 6WJI_A 36 IRQGTDYKHWPQIAQFAPSASAFF 59 (108)
+Q Consensus 36 irqgtdykhwpqiaqfapsasaff 59 (108)
+ |-..+|.-||..|....|+++.+.
+T Consensus 37 I~~S~DlvhWE~V~R~v~pt~s~~ 60 (276)
+T CCH00347.1|GH4 37 ILHSTDLVHWERVSRVVPPTWSFL 60 (276)
+Confidence 445678889999988777665543
+
+
diff -r 4ac5d5a9b21c -r 860bd6f8f480 test-data/6WLC_A.hhr
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/6WLC_A.hhr Sat Aug 01 04:16:19 2020 -0400
@@ -0,0 +1,140 @@
+Query 6WLC_A
+Match_columns 361
+No_of_seqs 1 out of 1
+Neff 1
+Searched_HMMs 641
+Date Sat Aug 1 03:09:18 2020
+Command hhsearch -e 0.001 -i /Users/guerler/galaxy/database/files/000/dataset_681.dat -d hhdb -o /Users/guerler/galaxy/database/files/000/dataset_836.dat
+
+ No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
+ 1 AAQ38148.1|GH12|99-246|3.8e-53 10.0 2 0.0032 24.8 0.0 20 54-73 20-39 (152)
+ 2 BAO41893.1|AA1_2.hmm|8.3e-157| 4.3 6.1 0.0095 25.9 0.0 44 12-62 171-214 (339)
+ 3 ALJ42190.1|194-452 2.4 13 0.02 22.3 0.0 14 86-99 160-173 (257)
+ 4 SCG78792.1|GH43_30.hmm|3.7e-96 2.4 13 0.02 22.8 0.0 33 156-188 134-166 (269)
+ 5 CAL37005.1|GH150|3.2.1.-|0|1-9 2.3 13 0.021 26.7 0.0 45 49-105 73-131 (942)
+ 6 AAF53285.2|GT92|406-770|5.4e-1 2.1 15 0.023 22.5 0.0 23 230-252 20-42 (321)
+ 7 ABQ89210.1|CE7|3-319|2e-146 1.9 17 0.026 22.0 0.0 22 252-273 182-203 (316)
+ 8 APU50764.1|CBM63||136-214 1.8 18 0.028 18.0 0.0 23 279-301 32-54 (78)
+ 9 APK54672.1|GT103 1.7 18 0.028 21.9 0.0 33 207-239 2-34 (232)
+ 10 AAO00509.1|GH107|87-420|2.9e-1 1.6 19 0.03 22.6 0.0 26 226-251 183-210 (329)
+
+No 1
+>AAQ38148.1|GH12|99-246|3.8e-53
+Probab=9.99 E-value=2 Score=24.85 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=17.2 Template_Neff=6.200
+
+Q 6WLC_A 54 KTTLPVNVAFELWAKRNIKP 73 (361)
+Q Consensus 54 kttlpvnvafelwakrnikp 73 (361)
+ .+.++.|+|+++|..|+.++
+T Consensus 20 ~~~~~~n~AyDiw~~~~~~~ 39 (152)
+T AAQ38148.1|GH1 20 PSNGPYNVAYDIWLSRDPNH 39 (152)
+Confidence 57889999999999998663
+
+
+No 2
+>BAO41893.1|AA1_2.hmm|8.3e-157|51-392
+Probab=4.30 E-value=6.1 Score=25.90 Aligned_cols=44 Identities=32% Similarity=0.485 Sum_probs=28.2 Template_Neff=3.800
+
+Q 6WLC_A 12 FNVVNKGHFDGQQGEVPVSIIINNNNTVYTKVDGVDVELFENKTTLPVNVA 62 (361)
+Q Consensus 12 fnvvnkghfdgqqgevpvsiiinnnntvytkvdgvdvelfenkttlpvnva 62 (361)
+ +.++|-|-|-+|. +.|..-+---..|||++||-.+ -..|.+.+|
+T Consensus 171 lRiIN~gaf~~~y------~~iegH~m~IIEvDGv~v~p~~-~~~l~i~va 214 (339)
+T BAO41893.1|AA1 171 LRIINMGAFVSQY------FWIEGHEMTIVEVDGVYVEPYT-TDMLYISVA 214 (339)
+Confidence 4467777776653 3444555555789999999877 344555555
+
+
+No 3
+>ALJ42190.1|194-452
+Probab=2.39 E-value=13 Score=22.33 Aligned_cols=14 Identities=43% Similarity=0.859 Sum_probs=10.5 Template_Neff=5.300
+
+Q 6WLC_A 86 DIAANTVIWDYKRD 99 (361)
+Q Consensus 86 diaantviwdykrd 99 (361)
+ .|+.|..||||-..
+T Consensus 160 ~~t~nI~iWDY~~n 173 (257)
+T ALJ42190.1|194 160 KITNNIYIWDYVVN 173 (257)
+Confidence 35678899999654
+
+
+No 4
+>SCG78792.1|GH43_30.hmm|3.7e-96|10-279
+Probab=2.39 E-value=13 Score=22.76 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=24.4 Template_Neff=4.700
+
+Q 6WLC_A 156 TEGSVKGLQPSVGPKQASLNGVTLIGEAVKTQF 188 (361)
+Q Consensus 156 tegsvkglqpsvgpkqaslngvtligeavktqf 188 (361)
+ ++|...|..+..--.+.+-+|++++|++++-.-
+T Consensus 134 ~DGn~~g~~t~i~lq~l~~DG~~l~G~~~~Ll~ 166 (269)
+T SCG78792.1|GH4 134 NDGNACGQPTWIWLQRLSADGLTLTGEPVELLR 166 (269)
+Confidence 455556666666667788999999999986543
+
+
+No 5
+>CAL37005.1|GH150|3.2.1.-|0|1-942
+Probab=2.29 E-value=13 Score=26.68 Aligned_cols=45 Identities=33% Similarity=0.674 Sum_probs=30.7 Template_Neff=3.000
+
+Q 6WLC_A 49 ELFENKTTLPVNVAFELWAKRNIKPVPEVKILNNLGVD--IAA------------NTVIWDYKRDDAPAHI 105 (361)
+Q Consensus 49 elfenkttlpvnvafelwakrnikpvpevkilnnlgvd--iaa------------ntviwdykrddapahi 105 (361)
+ .|++|+. +--+-|++|+.. +||=|.| +|| +-.+|.||.+++|-.-
+T Consensus 73 ~LW~n~l--Sgfmnhdiw~~D----------InnDG~DEIlaAnAdG~iYClns~GkLLW~Fk~n~~pm~s 131 (942)
+T CAL37005.1|GH1 73 ILWENKL--SGFMNHDIWCED----------INNDGNDEILAANADGTIYCLNSKGKLLWKFKPNEAPMYS 131 (942)
+Confidence 4788876 556779999864 3444444 233 3468999999999653
+
+
+No 6
+>AAF53285.2|GT92|406-770|5.4e-118
+Probab=2.07 E-value=15 Score=22.47 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=16.1 Template_Neff=5.400
+
+Q 6WLC_A 230 MDEFIERYKLEGYAFEHIVYGDF 252 (361)
+Q Consensus 230 mdefieryklegyafehivygdf 252 (361)
+ +-||||-|+|.|-.+=++-.+..
+T Consensus 20 ivEfIEyykL~GathF~fY~~~i 42 (321)
+T AAF53285.2|GT9 20 IVEFIEYYKLQGATHFYFYAGNI 42 (321)
+Confidence 56899999999985544444444
+
+
+No 7
+>ABQ89210.1|CE7|3-319|2e-146
+Probab=1.87 E-value=17 Score=22.01 Aligned_cols=22 Identities=41% Similarity=0.410 Sum_probs=18.4 Template_Neff=5.500
+
+Q 6WLC_A 252 FSHSQLGGLHLLLIGLAKRFKE 273 (361)
+Q Consensus 252 fshsqlgglhllliglakrfke 273 (361)
+ ...||=|||-|...+|..|.+.
+T Consensus 182 ~G~SQGGglala~aaL~~~i~~ 203 (316)
+T ABQ89210.1|CE7 182 TGGSQGGGLALAAAALDPRIKA 203 (316)
+Confidence 3479999999999999887664
+
+
+No 8
+>APU50764.1|CBM63||136-214
+Probab=1.76 E-value=18 Score=17.99 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=18.5 Template_Neff=4.800
+
+Q 6WLC_A 279 EEDFIPMDSTVKNYFITDAQTGS 301 (361)
+Q Consensus 279 eedfipmdstvknyfitdaqtgs 301 (361)
+ ..+++++..+--|||+.+...|.
+T Consensus 32 gg~W~~~~R~~YNyf~~~~g~G~ 54 (78)
+T APU50764.1|CBM 32 GGTWVSLPRTDYNYFVIPSGLGP 54 (78)
+Confidence 55788888888999999776664
+
+
+No 9
+>APK54672.1|GT103
+Probab=1.75 E-value=18 Score=21.89 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=24.5 Template_Neff=2.800
+
+Q 6WLC_A 207 TQSRNLQEFKPRSQMEIDFLELAMDEFIERYKL 239 (361)
+Q Consensus 207 tqsrnlqefkprsqmeidflelamdefierykl 239 (361)
+ .|-...-.+-.++.|..++|-|.+-|-++|-+.
+T Consensus 2 ~~~~~~~s~~~~~~~d~~~i~LsLPET~~RR~~ 34 (232)
+T APK54672.1|GT1 2 SQYKSIFSQCEISPQDVDFICLSLPETIERRRD 34 (232)
+Confidence 344455556677888899999999998888653
+
+
+No 10
+>AAO00509.1|GH107|87-420|2.9e-175
+Probab=1.65 E-value=19 Score=22.59 Aligned_cols=26 Identities=35% Similarity=0.760 Sum_probs=19.6 Template_Neff=2.000
+
+Q 6WLC_A 226 LELAMDEFIERYK--LEGYAFEHIVYGD 251 (361)
+Q Consensus 226 lelamdefieryk--legyafehivygd 251 (361)
+ +|..+.|+-.||. ..|+-|+|-.+||
+T Consensus 183 ~~~Iv~~~a~RYGslIDgWwFDhs~~gd 210 (329)
+T AAO00509.1|GH1 183 AENIVEEYAQRYGSLIDGWWFDHSECGD 210 (329)
+Confidence 4555666777776 5799999998888
+
+
diff -r 4ac5d5a9b21c -r 860bd6f8f480 test-data/7BQY_A.hhr
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/7BQY_A.hhr Sat Aug 01 04:16:19 2020 -0400
@@ -0,0 +1,156 @@
+Query 7BQY_A
+Match_columns 301
+No_of_seqs 1 out of 1
+Neff 1
+Searched_HMMs 641
+Date Sat Aug 1 03:09:19 2020
+Command hhsearch -e 0.001 -i /Users/guerler/galaxy/database/files/000/dataset_680.dat -d hhdb -o /Users/guerler/galaxy/database/files/000/dataset_837.dat
+
+ No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
+ 1 QCE11709.1|AA1||29-571 71.4 0.023 3.6E-05 43.5 0.0 77 64-142 282-369 (613)
+ 2 CAY81704.1|GT62|170-480|2.4e-1 12.6 1.5 0.0023 28.7 0.0 16 28-43 143-159 (267)
+ 3 ABO94043.1|GH5_32.hmm|1.7e-156 12.2 1.5 0.0024 29.5 0.0 62 157-224 78-141 (341)
+ 4 CAK38741.1|GT69|68-319|4.4e-96 11.9 1.6 0.0025 27.7 0.0 15 29-43 113-127 (236)
+ 5 F4RB90_MELLP/225-387 11.9 1.6 0.0025 26.5 0.0 21 209-229 119-139 (163)
+ 6 CAC34265.1|CBM50|45-95|0.0083 6.6 3.6 0.0056 18.3 0.0 14 104-117 5-18 (46)
+ 7 ALJ49469.1|GH147|3.2.1.23|0|1- 5.6 4.4 0.0068 29.2 0.0 68 117-190 205-282 (849)
+ 8 EEU61164.1|CBM62|446-579|2.3e- 5.4 4.6 0.0071 23.3 0.0 25 13-41 38-62 (131)
+ 9 AAQ83841.1|GH13_28.hmm|8.2e-50 4.7 5.5 0.0086 25.6 0.0 39 139-186 147-187 (317)
+ 10 CAH09708.1|GH123|60-598|1.6e-2 4.0 6.7 0.01 26.5 0.0 24 231-254 183-206 (535)
+
+No 1
+>QCE11709.1|AA1||29-571
+Probab=71.37 E-value=0.023 Score=43.54 Aligned_cols=77 Identities=31% Similarity=0.490 Sum_probs=55.1 Template_Neff=4.600
+
+Q 7BQY_A 64 HNFLVQAGN-VQLRVIGHSMQNCVLKLKVD----------TANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRP 132 (301)
+Q Consensus 64 hnflvqagn-vqlrvighsmqncvlklkvd----------tanpktpkykfvriqpgqtfsvlacyngspsgvyqcamrp 132 (301)
+ ..|-|+.|. ..||+|.-.+ ||-|.++++ -.--|.-++..+.|-|||+++||.-.|.+| +-|.-+.++
+T Consensus 282 ~~~~V~~GKtYrLRiINA~l-n~~l~f~IanH~lTVVe~DGsYtkP~~td~i~I~pGQt~dVLltAdQ~~-g~Yym~a~~ 359 (613)
+T QCE11709.1|AA1 282 FKFTVEPGKTYRLRIINAGL-NTELFFSIANHNLTVVEVDGSYTKPFTTDSLDIHPGQTYDVLLTADQPP-GDYYMAASP 359 (613)
+Confidence 345555553 4678887777 777666654 444555678889999999999999998865 679999999
+
+
+Q 7BQY_A 133 NFTIKGSFLN 142 (301)
+Q Consensus 133 nftikgsfln 142 (301)
+ .++-...|-|
+T Consensus 360 ~~~~~~~fdn 369 (613)
+T QCE11709.1|AA1 360 YFSCQVPFDN 369 (613)
+Confidence 8865533433
+
+
+No 2
+>CAY81704.1|GT62|170-480|2.4e-129
+Probab=12.64 E-value=1.5 Score=28.69 Aligned_cols=16 Identities=44% Similarity=0.736 Sum_probs=13.3 Template_Neff=3.500
+
+Q 7BQY_A 28 NGLWLD-DVVYCPRHVI 43 (301)
+Q Consensus 28 nglwld-dvvycprhvi 43 (301)
+ --+|+| ||+-||..+|
+T Consensus 143 WVlW~DaDI~~~P~tlI 159 (267)
+T CAY81704.1|GT6 143 WVLWRDADIVETPPTII 159 (267)
+Confidence 358998 8999998887
+
+
+No 3
+>ABO94043.1|GH5_32.hmm|1.7e-156|162-501
+Probab=12.23 E-value=1.5 Score=29.53 Aligned_cols=62 Identities=32% Similarity=0.530 Sum_probs=39.9 Template_Neff=2.300
+
+Q 7BQY_A 157 VSFCYMHHMELPTGVHAGTDLEGNF--YGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFT 224 (301)
+Q Consensus 157 vsfcymhhmelptgvhagtdlegnf--ygpfvdrqtaqaagtdttitvnvlawlyaavingdrwflnrft 224 (301)
+ -..|+||.| |-|..+||- .|-+ |..|.++.+-| .+..||+-|.|.|+- ..-..|+-+..-|+
+T Consensus 78 rv~~~lh~m--PGGas~gt~-~Gv~Ph~~~f~~~~~v~--~~G~~~~~n~l~W~~-~L~~d~k~~v~G~t 141 (341)
+T ABO94043.1|GH5 78 RVVCDLHNM--PGGASNGTY-NGVWPHPPMFWRHKDVQ--DTGRTIIHNFLNWLN-SLSEDDKMAVHGFT 141 (341)
+Confidence 457999987 666666652 3332 34477777766 455789999999974 44555665554443
+
+
+No 4
+>CAK38741.1|GT69|68-319|4.4e-96
+Probab=11.92 E-value=1.6 Score=27.69 Aligned_cols=15 Identities=53% Similarity=1.165 Sum_probs=12.7 Template_Neff=4.300
+
+Q 7BQY_A 29 GLWLDDVVYCPRHVI 43 (301)
+Q Consensus 29 glwlddvvycprhvi 43 (301)
+ =+||.||+.||..++
+T Consensus 113 vlFlNDV~f~p~DvL 127 (236)
+T CAK38741.1|GT6 113 VLFLNDVVFCPDDVL 127 (236)
+Confidence 479999999998764
+
+
+No 5
+>F4RB90_MELLP/225-387
+Probab=11.89 E-value=1.6 Score=26.48 Aligned_cols=21 Identities=43% Similarity=0.771 Sum_probs=17.4 Template_Neff=4.000
+
+Q 7BQY_A 209 YAAVINGDRWFLNRFTTTLND 229 (301)
+Q Consensus 209 yaavingdrwflnrftttlnd 229 (301)
+ -+--||..|||+|-|..-|+.
+T Consensus 119 N~kKiNSHrW~Fnaf~~~L~P 139 (163)
+T F4RB90_MELLP/2 119 NAKKINSHRWFFNAFGPQLQP 139 (163)
+Confidence 466799999999999887764
+
+
+No 6
+>CAC34265.1|CBM50|45-95|0.0083
+Probab=6.57 E-value=3.6 Score=18.31 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=11.3 Template_Neff=6.600
+
+Q 7BQY_A 104 VRIQPGQTFSVLAC 117 (301)
+Q Consensus 104 vriqpgqtfsvlac 117 (301)
+ .++++|+|+.-+|-
+T Consensus 5 y~V~~GDtl~~IA~ 18 (46)
+T CAC34265.1|CBM 5 YTVKSGDTLWSIAK 18 (46)
+Confidence 36889999988884
+
+
+No 7
+>ALJ49469.1|GH147|3.2.1.23|0|1-869
+Probab=5.63 E-value=4.4 Score=29.22 Aligned_cols=68 Identities=37% Similarity=0.423 Sum_probs=41.2 Template_Neff=3.700
+
+Q 7BQY_A 117 CYNGSPSGVYQ------CAMRPNFTIKGSFLNGSCGS----VGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFV 186 (301)
+Q Consensus 117 cyngspsgvyq------camrpnftikgsflngscgs----vgfnidydcvsfcymhhmelptgvhagtdlegnfygpfv 186 (301)
+ |+.|.+.+|-. -|||..-.-|--|-|=|-.. .-++-+-|-.+|- --|||.-+|..|+|||. |.|
+T Consensus 205 ~H~g~~~~vt~YInrMv~a~r~tG~~KPiFYNISes~~~a~A~~~s~idG~TFQ-----WYPtGLv~~~tl~GN~L-P~V 278 (849)
+T ALJ49469.1|GH1 205 HHSGPPEEVTAYINRMVKAIRKTGWKKPIFYNISESPHFADAVCNSNIDGITFQ-----WYPTGLVSGHTLNGNFL-PNV 278 (849)
+Confidence 55566665533 35665555566666655411 1122233455553 35999999999999975 777
+
+
+Q 7BQY_A 187 DRQT 190 (301)
+Q Consensus 187 drqt 190 (301)
+ |+-.
+T Consensus 279 d~Y~ 282 (849)
+T ALJ49469.1|GH1 279 DRYT 282 (849)
+Confidence 7643
+
+
+No 8
+>EEU61164.1|CBM62|446-579|2.3e-53
+Probab=5.42 E-value=4.6 Score=23.35 Aligned_cols=25 Identities=28% Similarity=0.634 Sum_probs=18.8 Template_Neff=3.000
+
+Q 7BQY_A 13 VEGCMVQVTCGTTTLNGLWLDDVVYCPRH 41 (301)
+Q Consensus 13 vegcmvqvtcgtttlnglwlddvvycprh 41 (301)
+ ..||-+++--|...- +..+.||||+
+T Consensus 38 ~~~~w~g~Dlg~~~~----i~~i~Y~PR~ 62 (131)
+T EEU61164.1|CBM 38 ANGGWVGLDLGAGVE----ISAIRYCPRN 62 (131)
+Confidence 356777777776544 7789999998
+
+
+No 9
+>AAQ83841.1|GH13_28.hmm|8.2e-50|58-317
+Probab=4.66 E-value=5.5 Score=25.60 Aligned_cols=39 Identities=31% Similarity=0.603 Sum_probs=26.1 Template_Neff=3.200
+
+Q 7BQY_A 139 SFLNG--SCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFV 186 (301)
+Q Consensus 139 sflng--scgsvgfnidydcvsfcymhhmelptgvhagtdlegnfygpfv 186 (301)
+ .||+- .||.-||..|- .-|.|||.....+ ..++|+.-..
+T Consensus 147 ~fL~~~vd~GaDGFRfDa-------AKHIELp~d~~~~--~~sdfW~~il 187 (317)
+T AAQ83841.1|GH1 147 DFLNDCVDDGADGFRFDA-------AKHIELPDDPDDN--YGSDFWPNIL 187 (317)
+Confidence 35553 57888998775 6899999987644 4455554443
+
+
+No 10
+>CAH09708.1|GH123|60-598|1.6e-247
+Probab=3.98 E-value=6.7 Score=26.51 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=20.9 Template_Neff=3.700
+
+Q 7BQY_A 231 NLVAMKYNYEPLTQDHVDILGPLS 254 (301)
+Q Consensus 231 nlvamkynyepltqdhvdilgpls 254 (301)
+ --||--|+-+|-+|.|.+++.|..
+T Consensus 183 ~avARy~~V~~WS~eHf~~mrp~m 206 (535)
+T CAH09708.1|GH1 183 YAVARYYGVEPWSQEHFDAMRPYM 206 (535)
+Confidence 347888999999999999999964
+
+
diff -r 4ac5d5a9b21c -r 860bd6f8f480 test-data/dbCAN_random.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/dbCAN_random.txt Sat Aug 01 04:16:19 2020 -0400
@@ -0,0 +1,15 @@
+CAA16605.1 0_0_0 CAA16605.1
+EOY02636.1 0_0_0 CAA16605.1
+AAF14068.1 0_0_0 EOY02636.1
+AAC45780.1 0_0_0 AAF14068.1
+AAC45780.1 0_0_0 AAC45780.1
+CAY81704.1 0_0_0 CAR47543.1
+CAK38741.1 0_0_0 ACD98010.1
+AJP22991.1 0_0_0 ACI15933.1
+ABO94043.1 0_0_0 ACY95489.1
+ACE81431.1 0_0_0 ABN52033.1
+AAK94929.1 0_0_0 ACY47587.1
+CAG81347.1 0_0_0 AAO76127.1
+CAG81347.1 0_0_0 AUO30192.1
+ATY34423.1 0_0_0 AHA42547.2
+QCE11709.1 0_0_0 AAW84061.1
\ No newline at end of file
diff -r 4ac5d5a9b21c -r 860bd6f8f480 test-data/dbCAN_result.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/dbCAN_result.txt Sat Aug 01 04:16:19 2020 -0400
@@ -0,0 +1,3 @@
+6W9C_A.hhr 24.2
+6W4H_B.hhr 24.0
+6W37_A.hhr 14.0
diff -r 4ac5d5a9b21c -r 860bd6f8f480 test-data/index.txt
--- a/test-data/index.txt Sat Aug 01 02:13:31 2020 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,16 +0,0 @@
-6W4H_B 0_0_0 1XM9_A
-6YZ1_B 0_0_0 3L6X_A
-6SPB_2 0_0_0 5D5K_C
-3UWD_A 0_0_0 3NMZ_A
-5FFO_H 0_0_0 6N4X_A
-3RJR_C 0_0_0 6N52_B
-5VQF_C 0_0_0 6N51_B
-5NTU_A 0_0_0 6W2Y_A
-2WZB_A 0_0_0 2WZB_A
-1HDI_A 0_0_0 1HDI_A
-6Y3A_A 0_0_0 6Y3A_A
-3UWD_A 0_0_0 3UWD_A
-5FFO_H 0_0_0 5FFO_H
-3RJR_C 0_0_0 3RJR_C
-5VQF_C 0_0_0 5VQF_C
-5NTU_A 0_0_0 5NTU_A
\ No newline at end of file
diff -r 4ac5d5a9b21c -r 860bd6f8f480 test-data/pdb70_random.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/pdb70_random.txt Sat Aug 01 04:16:19 2020 -0400
@@ -0,0 +1,16 @@
+6W4H_B 0_0_0 1XM9_A
+6YZ1_B 0_0_0 3L6X_A
+6SPB_2 0_0_0 5D5K_C
+3UWD_A 0_0_0 3NMZ_A
+5FFO_H 0_0_0 6N4X_A
+3RJR_C 0_0_0 6N52_B
+5VQF_C 0_0_0 6N51_B
+5NTU_A 0_0_0 6W2Y_A
+2WZB_A 0_0_0 2WZB_A
+1HDI_A 0_0_0 1HDI_A
+6Y3A_A 0_0_0 6Y3A_A
+3UWD_A 0_0_0 3UWD_A
+5FFO_H 0_0_0 5FFO_H
+3RJR_C 0_0_0 3RJR_C
+5VQF_C 0_0_0 5VQF_C
+5NTU_A 0_0_0 5NTU_A
\ No newline at end of file
diff -r 4ac5d5a9b21c -r 860bd6f8f480 test-data/pdb70_result.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/pdb70_result.txt Sat Aug 01 04:16:19 2020 -0400
@@ -0,0 +1,2 @@
+NP_000282.1.hhr 875.1
+NP_000290.2.hhr 86.5
diff -r 4ac5d5a9b21c -r 860bd6f8f480 test-data/result.txt
--- a/test-data/result.txt Sat Aug 01 02:13:31 2020 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,2 +0,0 @@
-NP_000282.1.hhr 875.1
-NP_000290.2.hhr 86.5