Mercurial > repos > guerler > springsuite
changeset 15:4a4888bf0338 draft
"planemo upload commit 5520427eafa1144d04445e0b87112a7ff615aed1"
| author | guerler |
|---|---|
| date | Sun, 27 Sep 2020 20:52:58 +0000 |
| parents | b53a98b90354 |
| children | 16eb2acaaa20 |
| files | spring_minz.py spring_minz.xml test-data/dbCAN_result.txt test-data/pdb70_result.txt |
| diffstat | 4 files changed, 13 insertions(+), 13 deletions(-) [+] |
line wrap: on
line diff
--- a/spring_minz.py Sun Sep 27 14:13:49 2020 +0000 +++ b/spring_minz.py Sun Sep 27 20:52:58 2020 +0000 @@ -43,7 +43,7 @@ interactions.sort(key=lambda tup: tup[1], reverse=True) with open(args.output, 'a+') as output_file: for i in interactions: - output_file.write("%s %s %s\n" % (args.name, i[0], i[1])) + output_file.write("%s\t%s\t%s\n" % (args.name, i[0], i[1])) def get_template_scores(hhr_file, min_score, identifier_length): result = {}
--- a/spring_minz.xml Sun Sep 27 14:13:49 2020 +0000 +++ b/spring_minz.xml Sun Sep 27 20:52:58 2020 +0000 @@ -20,7 +20,7 @@ <param name="idx" type="integer" label="Identifier length" value="6" min="1" max="20" help="Specify the length of the identifier e.g. `1ACB_A` has length 6."/> </inputs> <outputs> - <data format="txt" name="output" /> + <data format="tabular" name="output" /> </outputs> <tests> <test>
--- a/test-data/dbCAN_result.txt Sun Sep 27 14:13:49 2020 +0000 +++ b/test-data/dbCAN_result.txt Sun Sep 27 20:52:58 2020 +0000 @@ -1,9 +1,9 @@ -6W4H_A.hhr 6W4H_A.hhr 24.7 -6W9Q_A.hhr 6W4H_B.hhr 22.3 -6W9Q_A.hhr 6W9C_A.hhr 21.0 -6W37_A.hhr 6W9C_A.hhr 21.3 -6W37_A.hhr 6W4H_B.hhr 16.0 -6W37_A.hhr 6W37_A.hhr 14.0 -7BQY_A.hhr 6W9C_A.hhr 24.2 -7BQY_A.hhr 6W4H_B.hhr 24.0 -7BQY_A.hhr 6W37_A.hhr 14.0 +6W4H_A.hhr 6W4H_A.hhr 24.7 +6W9Q_A.hhr 6W4H_B.hhr 22.3 +6W9Q_A.hhr 6W9C_A.hhr 21.0 +6W37_A.hhr 6W9C_A.hhr 21.3 +6W37_A.hhr 6W4H_B.hhr 16.0 +6W37_A.hhr 6W37_A.hhr 14.0 +7BQY_A.hhr 6W9C_A.hhr 24.2 +7BQY_A.hhr 6W4H_B.hhr 24.0 +7BQY_A.hhr 6W37_A.hhr 14.0