view Hammock/matrices/blosum40.txt @ 4:22b245c1bb94 draft

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#  Matrix made by matblas from blosum40.iij
#  * column uses minimum score
#  BLOSUM Clustered Scoring Matrix in 1/4 Bit Units
#  Blocks Database = /data/blocks_5.0/blocks.dat
#  Cluster Percentage: >= 40
#  Entropy =   0.2851, Expected =  -0.2090
   A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  Z  X  *
A  5 -2 -1 -1 -2  0 -1  1 -2 -1 -2 -1 -1 -3 -2  1  0 -3 -2  0 -1 -1  0 -6 
R -2  9  0 -1 -3  2 -1 -3  0 -3 -2  3 -1 -2 -3 -1 -2 -2 -1 -2 -1  0 -1 -6 
N -1  0  8  2 -2  1 -1  0  1 -2 -3  0 -2 -3 -2  1  0 -4 -2 -3  4  0 -1 -6 
D -1 -1  2  9 -2 -1  2 -2  0 -4 -3  0 -3 -4 -2  0 -1 -5 -3 -3  6  1 -1 -6 
C -2 -3 -2 -2 16 -4 -2 -3 -4 -4 -2 -3 -3 -2 -5 -1 -1 -6 -4 -2 -2 -3 -2 -6 
Q  0  2  1 -1 -4  8  2 -2  0 -3 -2  1 -1 -4 -2  1 -1 -1 -1 -3  0  4 -1 -6 
E -1 -1 -1  2 -2  2  7 -3  0 -4 -2  1 -2 -3  0  0 -1 -2 -2 -3  1  5 -1 -6 
G  1 -3  0 -2 -3 -2 -3  8 -2 -4 -4 -2 -2 -3 -1  0 -2 -2 -3 -4 -1 -2 -1 -6 
H -2  0  1  0 -4  0  0 -2 13 -3 -2 -1  1 -2 -2 -1 -2 -5  2 -4  0  0 -1 -6 
I -1 -3 -2 -4 -4 -3 -4 -4 -3  6  2 -3  1  1 -2 -2 -1 -3  0  4 -3 -4 -1 -6 
L -2 -2 -3 -3 -2 -2 -2 -4 -2  2  6 -2  3  2 -4 -3 -1 -1  0  2 -3 -2 -1 -6 
K -1  3  0  0 -3  1  1 -2 -1 -3 -2  6 -1 -3 -1  0  0 -2 -1 -2  0  1 -1 -6 
M -1 -1 -2 -3 -3 -1 -2 -2  1  1  3 -1  7  0 -2 -2 -1 -2  1  1 -3 -2  0 -6 
F -3 -2 -3 -4 -2 -4 -3 -3 -2  1  2 -3  0  9 -4 -2 -1  1  4  0 -3 -4 -1 -6 
P -2 -3 -2 -2 -5 -2  0 -1 -2 -2 -4 -1 -2 -4 11 -1  0 -4 -3 -3 -2 -1 -2 -6 
S  1 -1  1  0 -1  1  0  0 -1 -2 -3  0 -2 -2 -1  5  2 -5 -2 -1  0  0  0 -6 
T  0 -2  0 -1 -1 -1 -1 -2 -2 -1 -1  0 -1 -1  0  2  6 -4 -1  1  0 -1  0 -6 
W -3 -2 -4 -5 -6 -1 -2 -2 -5 -3 -1 -2 -2  1 -4 -5 -4 19  3 -3 -4 -2 -2 -6 
Y -2 -1 -2 -3 -4 -1 -2 -3  2  0  0 -1  1  4 -3 -2 -1  3  9 -1 -3 -2 -1 -6 
V  0 -2 -3 -3 -2 -3 -3 -4 -4  4  2 -2  1  0 -3 -1  1 -3 -1  5 -3 -3 -1 -6 
B -1 -1  4  6 -2  0  1 -1  0 -3 -3  0 -3 -3 -2  0  0 -4 -3 -3  5  2 -1 -6 
Z -1  0  0  1 -3  4  5 -2  0 -4 -2  1 -2 -4 -1  0 -1 -2 -2 -3  2  5 -1 -6 
X  0 -1 -1 -1 -2 -1 -1 -1 -1 -1 -1 -1  0 -1 -2  0  0 -2 -1 -1 -1 -1 -1 -6 
* -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6  1