# HG changeset patch
# User haydensun
# Date 1516614043 18000
# Node ID 52225f471c5779eb572dad78521588b82f150cf7
# Parent  9cd4a30cb4f85148eee6d3ee7b591510bf109ed6
planemo upload for repository https://github.com/shao-lab/MAnorm/tree/master/galaxy-tool

diff -r 9cd4a30cb4f8 -r 52225f471c57 test-data/output_dir/output_figures/sample1_vs_sample2_MA_plot_after_normalization.png
Binary file test-data/output_dir/output_figures/sample1_vs_sample2_MA_plot_after_normalization.png has changed
diff -r 9cd4a30cb4f8 -r 52225f471c57 test-data/output_dir/output_figures/sample1_vs_sample2_MA_plot_before_normalization.png
Binary file test-data/output_dir/output_figures/sample1_vs_sample2_MA_plot_before_normalization.png has changed
diff -r 9cd4a30cb4f8 -r 52225f471c57 test-data/output_dir/output_figures/sample1_vs_sample2_MA_plot_with_P-value.png
Binary file test-data/output_dir/output_figures/sample1_vs_sample2_MA_plot_with_P-value.png has changed
diff -r 9cd4a30cb4f8 -r 52225f471c57 test-data/output_dir/output_figures/sample1_vs_sample2_read_density_on_common_peaks.png
Binary file test-data/output_dir/output_figures/sample1_vs_sample2_read_density_on_common_peaks.png has changed
diff -r 9cd4a30cb4f8 -r 52225f471c57 test-data/output_dir/output_filters/sample1_M_above_1.0_biased_peaks.bed
--- a/test-data/output_dir/output_filters/sample1_M_above_1.0_biased_peaks.bed	Mon Jan 22 04:03:44 2018 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,194 +0,0 @@
-chr22	17600765	17601507	sample1_unique	1.57851
-chr22	17601560	17603428	sample1_unique	2.94106
-chr22	17678918	17681229	sample1_unique	3.41949
-chr22	17737650	17739303	sample1_unique	2.92689
-chr22	17741606	17742657	sample1_unique	2.11613
-chr22	17744938	17746309	sample1_unique	1.94216
-chr22	17746387	17748139	sample1_unique	2.60893
-chr22	17859934	17861030	sample1_unique	2.55944
-chr22	17861056	17861822	sample1_unique	2.71216
-chr22	17915381	17916720	sample1_unique	2.16246
-chr22	18592645	18594259	sample1_unique	2.72675
-chr22	18921128	18924431	sample1_unique	2.24131
-chr22	18957348	18959277	sample1_unique	1.41867
-chr22	19510336	19512720	sample1_unique	3.36377
-chr22	20790008	20793276	sample1_unique	1.87549
-chr22	21310579	21312984	sample1_unique	2.80007
-chr22	21385901	21387790	sample1_unique	1.18896
-chr22	23907485	23909535	sample1_unique	3.12739
-chr22	24302547	24304742	sample1_unique	4.01623
-chr22	24320984	24322905	sample1_unique	2.93401
-chr22	24550956	24553548	sample1_unique	2.73583
-chr22	24819545	24821142	sample1_unique	1.22608
-chr22	24889958	24891411	sample1_unique	3.21148
-chr22	25392838	25393613	sample1_unique	2.02837
-chr22	25677589	25680097	sample1_unique	5.42196
-chr22	26564072	26566978	sample1_unique	4.5006
-chr22	27298785	27300640	sample1_unique	2.80103
-chr22	27348486	27349644	sample1_unique	3.16036
-chr22	28137535	28139572	sample1_unique	2.16246
-chr22	28144619	28146590	sample1_unique	1.9905
-chr22	28171408	28172993	sample1_unique	2.27443
-chr22	28186726	28187813	sample1_unique	2.46426
-chr22	28190074	28192014	sample1_unique	4.72866
-chr22	28192341	28195285	sample1_unique	3.439
-chr22	28196189	28199406	sample1_unique	4.33893
-chr22	29313232	29314596	sample1_unique	2.34471
-chr22	29399801	29401859	sample1_unique	3.48784
-chr22	29450884	29452035	sample1_unique	2.09682
-chr22	29710525	29712251	sample1_unique	1.67411
-chr22	29865384	29866959	sample1_unique	2.08337
-chr22	30098795	30100183	sample1_unique	2.79291
-chr22	30116747	30117753	sample1_unique	2.39582
-chr22	30641030	30643381	sample1_unique	2.59123
-chr22	30792332	30794552	sample1_unique	3.25371
-chr22	30969514	30971406	sample1_unique	3.59691
-chr22	31197776	31200064	sample1_unique	2.29229
-chr22	31217749	31219444	sample1_unique	2.55325
-chr22	31500570	31501688	sample1_unique	2.91371
-chr22	31534784	31536832	sample1_unique	3.68647
-chr22	32571278	32573074	sample1_unique	3.80362
-chr22	32598218	32601736	sample1_unique	3.68647
-chr22	33196708	33200016	sample1_unique	2.80525
-chr22	33446573	33448945	sample1_unique	4.76742
-chr22	33449302	33454799	sample1_unique	4.78362
-chr22	34246954	34247915	sample1_unique	2.71216
-chr22	34292262	34294389	sample1_unique	3.39372
-chr22	34310090	34311030	sample1_unique	2.52991
-chr22	35237347	35238515	sample1_unique	3.11087
-chr22	35776556	35778208	sample1_unique	3.41403
-chr22	36230908	36233275	sample1_unique	2.62113
-chr22	36357171	36358601	sample1_unique	2.22553
-chr22	36804968	36807061	sample1_unique	2.88213
-chr22	37098915	37100443	sample1_unique	3.21148
-chr22	37212002	37213974	sample1_unique	3.19341
-chr22	37447358	37448832	sample1_unique	2.19497
-chr22	37583226	37585298	sample1_unique	2.18622
-chr22	37608007	37609134	sample1_unique	2.91371
-chr22	37720256	37721687	sample1_unique	3.44478
-chr22	37729985	37732489	sample1_unique	3.17436
-chr22	37815317	37817211	sample1_unique	3.51581
-chr22	37821678	37824142	sample1_unique	2.63327
-chr22	37941359	37942767	sample1_unique	1.84467
-chr22	38220361	38222098	sample1_unique	3.63419
-chr22	38367000	38368082	sample1_unique	2.17064
-chr22	38378602	38381101	sample1_unique	3.40089
-chr22	38492727	38493363	sample1_unique	1.95047
-chr22	38493390	38494446	sample1_unique	1.5661
-chr22	39198210	39199591	sample1_unique	1.71308
-chr22	39509799	39511274	sample1_unique	1.76834
-chr22	39609938	39611320	sample1_unique	2.59298
-chr22	40390363	40392503	sample1_unique	3.74778
-chr22	40588493	40591096	sample1_unique	2.65796
-chr22	41109691	41111432	sample1_unique	2.34471
-chr22	41633456	41634887	sample1_unique	3.23004
-chr22	42310358	42312369	sample1_unique	1.77072
-chr22	42371815	42374628	sample1_unique	3.22608
-chr22	42469788	42471274	sample1_unique	2.78654
-chr22	42678824	42680520	sample1_unique	3.57893
-chr22	42699793	42700985	sample1_unique	1.9905
-chr22	42736491	42737758	sample1_unique	2.70355
-chr22	42760459	42762524	sample1_unique	2.89261
-chr22	43115353	43117914	sample1_unique	4.04113
-chr22	43737903	43739021	sample1_unique	3.65275
-chr22	43739383	43740594	sample1_unique	3.67825
-chr22	43807042	43808943	sample1_unique	2.45566
-chr22	44257050	44258781	sample1_unique	2.10684
-chr22	44286929	44288726	sample1_unique	4.984
-chr22	44542746	44544775	sample1_unique	4.3796
-chr22	44725999	44727571	sample1_unique	2.42826
-chr22	44727837	44728624	sample1_unique	2.23097
-chr22	45097407	45099932	sample1_unique	2.15909
-chr22	45147813	45150353	sample1_unique	2.14414
-chr22	45150960	45152809	sample1_unique	2.958
-chr22	45401343	45407151	sample1_unique	3.95303
-chr22	45663405	45664386	sample1_unique	1.94318
-chr22	45680384	45681686	sample1_unique	3.85529
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-chr22	45897661	45901977	sample1_unique	4.8626
-chr22	46240706	46242100	sample1_unique	3.0478
-chr22	46262137	46264216	sample1_unique	4.16246
-chr22	46366694	46368245	sample1_unique	3.54227
-chr22	46371772	46373065	sample1_unique	3.34099
-chr22	46439871	46441878	sample1_unique	2.72675
-chr22	46456654	46458268	sample1_unique	2.32391
-chr22	46467242	46469458	sample1_unique	5.20107
-chr22	46932542	46935154	sample1_unique	3.82682
-chr22	48765018	48767195	sample1_unique	3.76834
-chr22	48884474	48885110	sample1_unique	4.94829
-chr22	48885284	48888080	sample1_unique	5.69983
-chr22	48892274	48893299	sample1_unique	2.60647
-chr22	48972090	48973035	sample1_unique	3.9962
-chr22	49929666	49931058	sample1_unique	1.68636
-chr22	50025408	50026900	sample1_unique	1.7425
-chr22	50063784	50065606	sample1_unique	2.12102
-chr22	50164641	50165788	sample1_unique	2.45566
-chr22	50241425	50243736	sample1_unique	2.03295
-chr22	50496346	50498533	sample1_unique	2.71562
-chr22	50731085	50732274	sample1_unique	3.39372
-chr22	50737897	50738966	sample1_unique	3.0478
-chr22	50968440	50971303	sample1_unique	3.61209
-chr22	51041942	51042912	sample1_unique	2.76742
-chr22	51079736	51081273	sample1_unique	1.36485
-chr22	51111225	51112598	sample1_unique	3.96435
-chr22	51113030	51114747	sample1_unique	1.84142
-chr22	17847452	17852425	merged_common_peaks	3.38915
-chr22	24308072	24310450	merged_common_peaks	1.3214
-chr22	24315031	24317800	merged_common_peaks	1.43595
-chr22	24949253	24953941	merged_common_peaks	1.46137
-chr22	24987892	24989695	merged_common_peaks	1.56088
-chr22	25201265	25203647	merged_common_peaks	1.24649
-chr22	25347699	25350657	merged_common_peaks	2.31569
-chr22	25506227	25508640	merged_common_peaks	2.22576
-chr22	25959090	25962619	merged_common_peaks	1.26381
-chr22	26824052	26826572	merged_common_peaks	1.3102
-chr22	26907083	26909970	merged_common_peaks	1.07513
-chr22	27052651	27055759	merged_common_peaks	2.3505
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-chr22	29661962	29667333	merged_common_peaks	1.40762
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-chr22	31737224	31744105	merged_common_peaks	2.55589
-chr22	32143388	32147265	merged_common_peaks	1.23148
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-chr22	35652289	35655527	merged_common_peaks	1.12646
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-chr22	36234421	36237207	merged_common_peaks	3.03459
-chr22	36422598	36426283	merged_common_peaks	1.3968
-chr22	37170885	37173518	merged_common_peaks	1.8813
-chr22	38092153	38094082	merged_common_peaks	2.54682
-chr22	38213482	38215519	merged_common_peaks	1.30809
-chr22	38710768	38714851	merged_common_peaks	1.56519
-chr22	38788808	38794930	merged_common_peaks	1.15844
-chr22	38898442	38903805	merged_common_peaks	1.33914
-chr22	39266363	39270312	merged_common_peaks	1.05973
-chr22	39637588	39641429	merged_common_peaks	1.73965
-chr22	39710804	39717393	merged_common_peaks	1.142
-chr22	40057706	40059603	merged_common_peaks	1.77793
-chr22	40439063	40442471	merged_common_peaks	1.08381
-chr22	40571251	40580168	merged_common_peaks	1.44791
-chr22	40741354	40745059	merged_common_peaks	1.11444
-chr22	41249963	41254610	merged_common_peaks	1.1798
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-chr22	41775926	41779369	merged_common_peaks	1.31669
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-chr22	42015334	42018772	merged_common_peaks	1.07246
-chr22	42664338	42667609	merged_common_peaks	1.13327
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-chr22	42833341	42834796	merged_common_peaks	1.83157
-chr22	42913946	42916913	merged_common_peaks	1.02258
-chr22	43008877	43012533	merged_common_peaks	1.13355
-chr22	43409061	43412522	merged_common_peaks	1.07789
-chr22	43505562	43508360	merged_common_peaks	1.67553
-chr22	44206995	44209536	merged_common_peaks	1.79622
-chr22	44318513	44322111	merged_common_peaks	2.48361
-chr22	45557722	45562030	merged_common_peaks	1.34414
-chr22	45635258	45637705	merged_common_peaks	1.16222
-chr22	45664473	45665850	merged_common_peaks	1.06164
-chr22	46066767	46069454	merged_common_peaks	1.20928
-chr22	46464731	46466968	merged_common_peaks	1.31515
-chr22	46691354	46694232	merged_common_peaks	1.03062
diff -r 9cd4a30cb4f8 -r 52225f471c57 test-data/output_dir/output_filters/sample1_M_below_-1.0_biased_peaks.bed
--- a/test-data/output_dir/output_filters/sample1_M_below_-1.0_biased_peaks.bed	Mon Jan 22 04:03:44 2018 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,323 +0,0 @@
-chr22	19962335	19962994	sample1_unique	-1.95946
-chr22	23487142	23488439	sample1_unique	-1.72312
-chr22	16190882	16193697	merged_common_peaks	-3.66041
-chr22	17079937	17087399	merged_common_peaks	-3.57132
-chr22	17651478	17653756	merged_common_peaks	-1.23247
-chr22	18890969	18892794	merged_common_peaks	-2.63305
-chr22	19130306	19132984	merged_common_peaks	-1.16139
-chr22	19162799	19167844	merged_common_peaks	-1.60734
-chr22	19277752	19280584	merged_common_peaks	-1.73842
-chr22	19416108	19421837	merged_common_peaks	-1.49719
-chr22	19464710	19470616	merged_common_peaks	-1.1155
-chr22	19700698	19703180	merged_common_peaks	-2.96178
-chr22	19704677	19713364	merged_common_peaks	-3.23373
-chr22	19717589	19719520	merged_common_peaks	-2.65522
-chr22	19742528	19745398	merged_common_peaks	-1.4251
-chr22	19748601	19751068	merged_common_peaks	-2.67719
-chr22	19838872	19844530	merged_common_peaks	-1.48846
-chr22	19927248	19932232	merged_common_peaks	-3.47565
-chr22	19945987	19948655	merged_common_peaks	-1.38893
-chr22	20002005	20005747	merged_common_peaks	-2.07336
-chr22	20006882	20011217	merged_common_peaks	-2.32528
-chr22	20066007	20069962	merged_common_peaks	-1.0948
-chr22	20117937	20121121	merged_common_peaks	-1.63639
-chr22	20285487	20288769	merged_common_peaks	-1.45408
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diff -r 9cd4a30cb4f8 -r 52225f471c57 test-data/output_dir/output_filters/sample1_vs_sample2_unbiased_peaks.bed
--- a/test-data/output_dir/output_filters/sample1_vs_sample2_unbiased_peaks.bed	Mon Jan 22 04:03:44 2018 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,254 +0,0 @@
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diff -r 9cd4a30cb4f8 -r 52225f471c57 test-data/output_dir/output_tracks/sample1_vs_sample2_A_values.wig
--- a/test-data/output_dir/output_tracks/sample1_vs_sample2_A_values.wig	Mon Jan 22 04:03:44 2018 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,848 +0,0 @@
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diff -r 9cd4a30cb4f8 -r 52225f471c57 test-data/output_dir/output_tracks/sample1_vs_sample2_M_values.wig
--- a/test-data/output_dir/output_tracks/sample1_vs_sample2_M_values.wig	Mon Jan 22 04:03:44 2018 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,848 +0,0 @@
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diff -r 9cd4a30cb4f8 -r 52225f471c57 test-data/output_dir/output_tracks/sample1_vs_sample2_P_values.wig
--- a/test-data/output_dir/output_tracks/sample1_vs_sample2_P_values.wig	Mon Jan 22 04:03:44 2018 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,848 +0,0 @@
-track type=wiggle_0 name=sample1_vs_sample2_-log10(P_value) visibility=full autoScale=on color=255,0,0 yLineMark=0 yLineOnOff=on priority=10
-variableStep chrom=chr22 span=100
-16096296	4.30044060987
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-16201657	10.4501352195
-16404772	1.33892459842
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diff -r 9cd4a30cb4f8 -r 52225f471c57 test-data/output_dir/sample1_vs_sample2_all_MAvalues.xls
--- a/test-data/output_dir/sample1_vs_sample2_all_MAvalues.xls	Mon Jan 22 04:03:44 2018 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,847 +0,0 @@
-chr	start	end	summit	M_value	A_value	P_value	Peak_Group	normalized_read_density_in_sample1	normalized_read_density_in_sample2
-chr22	17089331	17090971	355	-0.77275	4.22147	0.0175888164449	sample1_unique	14.2718	24.3837
-chr22	17600766	17601507	570	1.57851	3.24593	0.00485157966614	sample1_unique	16.39501	5.4895
-chr22	17601561	17603428	1126	2.94106	3.85712	1.7362239646e-08	sample1_unique	40.15896	5.2292
-chr22	17678919	17681229	1189	3.41949	4.19508	6.15682960343e-13	sample1_unique	59.91416	5.59964
-chr22	17737651	17739303	553	2.92689	2.29248	0.00091552734375	sample1_unique	13.50971	1.7765
-chr22	17741607	17742657	590	2.11613	2.58995	0.0042724609375	sample1_unique	12.53609	2.89163
-chr22	17744939	17746309	794	1.94216	2.94741	0.00369644165039	sample1_unique	15.12109	3.93491
-chr22	17746388	17748139	1072	2.60893	2.5222	0.00091552734375	sample1_unique	14.18865	2.32581
-chr22	17859935	17861030	198	2.55944	2.5	0.00091552734375	sample1_unique	13.73438	2.32992
-chr22	17861057	17861822	403	2.71216	2.19616	0.00277709960938	sample1_unique	11.73089	1.79015
-chr22	17915382	17916720	788	2.16246	2.32193	0.0047607421875	sample1_unique	10.57921	2.36313
-chr22	18404489	18405788	584	1.57145	2.78112	0.0138854980469	sample1_unique	11.85025	3.98725
-chr22	18592646	18594259	1266	2.72675	3.09984	3.42726707458e-05	sample1_unique	22.05777	3.33218
-chr22	18647168	18647907	552	1.10468	3.55817	0.0161167234182	sample1_unique	17.27376	8.03239
-chr22	18648072	18649118	393	1.02225	3.60473	0.0232797116041	sample1_unique	17.33787	8.53627
-chr22	18921129	18924431	2202	2.24131	4.50351	5.44949123197e-08	sample1_unique	49.32219	10.43136
-chr22	18957349	18959277	909	1.41867	4.59615	0.000165141518873	sample1_unique	39.54669	14.79272
-chr22	19136299	19137531	612	1.12669	2.90689	0.0333251953125	sample1_unique	11.08268	5.07548
-chr22	19273071	19274301	705	-0.23592	3.39232	0.0840940475464	sample1_unique	9.67566	11.39461
-chr22	19510337	19512720	750	3.36377	3.1496	1.04657374322e-06	sample1_unique	28.47226	2.76583
-chr22	19608751	19609615	602	-1.11373	3.54373	0.0161167234182	sample1_unique	7.92749	17.15545
-chr22	19962336	19962994	196	-1.95946	3.81741	9.78546449915e-05	sample1_unique	7.1487	27.80245
-chr22	20725303	20727187	707	0.76083	3.56593	0.0389666557312	sample1_unique	15.41588	9.09778
-chr22	20790009	20793276	2483	1.87549	4.06593	7.96589040419e-05	sample1_unique	32.08162	8.74334
-chr22	21310580	21312984	1139	2.80007	3.91724	6.65552519763e-08	sample1_unique	39.8712	5.72472
-chr22	21318520	21320010	627	-0.00564	4.22869	0.0642926603177	sample1_unique	18.71172	18.78501
-chr22	21385902	21387790	693	1.18896	3.96832	0.00381633115467	sample1_unique	23.63413	10.36638
-chr22	22279641	22280445	609	0.21568	2.97418	0.0981903076172	sample1_unique	8.46799	7.29213
-chr22	23487143	23488439	626	-1.72312	5.06464	2.2771538717e-07	sample1_unique	18.41845	60.80845
-chr22	23578975	23579942	559	-0.92436	3.78112	0.0186544004828	sample1_unique	9.97931	18.93915
-chr22	23583534	23585842	1538	-0.13827	5.38965	0.039499347846	sample1_unique	39.96084	43.98028
-chr22	23907486	23909535	730	3.12739	3.65189	2.30261321121e-08	sample1_unique	37.15759	4.25216
-chr22	24302548	24304742	1150	4.01623	2.78112	2.02562659979e-07	sample1_unique	27.65053	1.70883
-chr22	24320985	24322905	1007	2.93401	3.39232	2.38185748458e-06	sample1_unique	29.02703	3.7982
-chr22	24353252	24354002	309	0.69714	1.95345	0.109375	sample1_unique	4.93148	3.0417
-chr22	24550957	24553548	792	2.73583	3.62869	1.58578404807e-06	sample1_unique	31.92479	4.79249
-chr22	24819546	24821142	662	1.22608	3.69616	0.00578929670155	sample1_unique	19.82433	8.47445
-chr22	24889959	24891411	388	3.21148	2.79248	1.50799751282e-05	sample1_unique	21.08609	2.27638
-chr22	25392839	25393613	193	2.02837	2.26178	0.008056640625	sample1_unique	9.68643	2.37445
-chr22	25677590	25680097	1587	5.42196	3.41168	2.70627026648e-19	sample1_unique	69.67939	1.62529
-chr22	26564073	26566978	1751	4.5006	3.37073	2.83106871279e-13	sample1_unique	49.21513	2.17412
-chr22	26963929	26964790	278	0.78654	2.89068	0.0610961914062	sample1_unique	9.74019	5.64671
-chr22	27043421	27044757	611	1.51581	2.92899	0.0163421630859	sample1_unique	12.87852	4.50362
-chr22	27056480	27057659	610	0.34014	3.21523	0.0834617614746	sample1_unique	10.44905	8.25438
-chr22	27152818	27153280	224	1.1163	2.37744	0.0604248046875	sample1_unique	7.65069	3.52907
-chr22	27298786	27300640	528	2.80103	3.33267	7.32601620257e-06	sample1_unique	26.59688	3.81625
-chr22	27348487	27349644	512	3.16036	2.39721	0.00029182434082	sample1_unique	15.7512	1.76178
-chr22	27694887	27695868	660	0.46384	2.74593	0.0916442871094	sample1_unique	7.87811	5.71206
-chr22	27707183	27708641	675	1.00293	3.32732	0.0277233123779	sample1_unique	14.20951	7.09034
-chr22	28137536	28139572	336	2.16246	2.32193	0.0047607421875	sample1_unique	10.57921	2.36313
-chr22	28140002	28140699	177	2.11538	1.40368	0.02734375	sample1_unique	5.50739	1.27102
-chr22	28144620	28146590	1522	1.9905	2.76958	0.00259399414062	sample1_unique	13.59336	3.42079
-chr22	28171409	28172993	373	2.27443	2.66096	0.00259399414062	sample1_unique	13.9112	2.87536
-chr22	28186727	28187813	730	2.46426	2.08496	0.008056640625	sample1_unique	9.96652	1.80604
-chr22	28190075	28192014	1062	4.72866	1.67878	6.48498535156e-05	sample1_unique	16.48532	0.62177
-chr22	28192342	28195285	1612	3.439	2.5222	5.00679016113e-05	sample1_unique	18.91816	1.74436
-chr22	28196190	28199406	1603	4.33893	2.92587	4.58385329694e-09	sample1_unique	34.18603	1.68928
-chr22	28200145	28201329	549	1.36419	2.48864	0.02685546875	sample1_unique	9.00505	3.49804
-chr22	29313233	29314596	627	2.34471	2.40368	0.00277709960938	sample1_unique	11.92597	2.34783
-chr22	29399802	29401859	1157	3.48784	2.91645	1.30757689476e-06	sample1_unique	25.28781	2.25407
-chr22	29450885	29452035	681	2.09682	2.29248	0.008056640625	sample1_unique	10.1323	2.36866
-chr22	29710526	29712251	962	1.67411	3.0	0.00583648681641	sample1_unique	14.2912	4.47828
-chr22	29865385	29866959	639	2.08337	3.99718	2.17251556478e-05	sample1_unique	32.87377	7.75698
-chr22	30098796	30100183	1197	2.79291	2.60473	0.00029182434082	sample1_unique	16.01315	2.31061
-chr22	30115407	30115890	296	2.51952	1.58496	0.015625	sample1_unique	7.18366	1.25284
-chr22	30116748	30117753	262	2.39582	2.05426	0.008056640625	sample1_unique	9.52798	1.81045
-chr22	30641031	30643381	1151	2.59123	4.38698	6.41116615525e-09	sample1_unique	51.36077	8.52302
-chr22	30792333	30794552	1373	3.25371	3.33621	1.74157321453e-07	sample1_unique	31.19115	3.27015
-chr22	30901132	30901972	368	1.16357	3.18316	0.018482208252	sample1_unique	13.59444	6.06865
-chr22	30969515	30971406	797	3.59691	2.96537	3.78116965294e-07	sample1_unique	27.16778	2.24531
-chr22	31197777	31200064	865	2.29229	3.27729	0.000188499689102	sample1_unique	21.45787	4.38065
-chr22	31217750	31219444	958	2.55325	3.68316	2.74297781289e-06	sample1_unique	31.12032	5.30199
-chr22	31500571	31501688	369	2.91371	1.76178	0.0048828125	sample1_unique	9.30906	1.23535
-chr22	31518633	31519721	455	0.84631	2.78112	0.0610961914062	sample1_unique	9.21686	5.12647
-chr22	31534785	31536832	1159	3.68647	3.29436	1.53449946083e-08	sample1_unique	35.20223	2.73421
-chr22	31665632	31666923	552	1.59707	2.35712	0.02685546875	sample1_unique	8.91142	2.94565
-chr22	32571279	32573074	992	3.80362	2.16096	3.43322753906e-05	sample1_unique	16.71151	1.19677
-chr22	32598219	32601736	2409	3.68647	3.29436	1.53449946083e-08	sample1_unique	35.20223	2.73421
-chr22	33196709	33200016	1630	2.80525	3.65984	9.13027179195e-07	sample1_unique	33.41595	4.78068
-chr22	33446574	33448945	1129	4.76742	1.69616	3.43322753906e-05	sample1_unique	16.91076	0.62091
-chr22	33449303	33454799	4406	4.78362	4.22199	4.19040447663e-25	sample1_unique	97.93822	3.55581
-chr22	33965387	33966106	551	1.47832	1.6427	0.08203125	sample1_unique	5.21208	1.87065
-chr22	34246955	34247915	341	2.71216	2.19616	0.00277709960938	sample1_unique	11.73089	1.79015
-chr22	34292263	34294389	735	3.39372	1.9771	0.00042724609375	sample1_unique	12.76357	1.2144
-chr22	34310091	34311030	587	2.52991	2.11441	0.008056640625	sample1_unique	10.40615	1.80182
-chr22	35237348	35238515	645	3.11087	1.85022	0.00146484375	sample1_unique	10.59752	1.2267
-chr22	35419779	35420616	647	0.73	2.40368	0.08056640625	sample1_unique	6.81484	4.10869
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-chr22	29492395	29493842	602	-2.15533	2.90368	0.00231027603149	sample2_unique	3.54556	15.79444
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-chr22	29778230	29779814	469	-2.99928	2.61441	0.000163078308105	sample2_unique	2.1656	17.31619
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-chr22	30682940	30683579	290	-2.74797	2.76958	0.000317096710205	sample2_unique	2.63097	17.6741
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-chr22	31005132	31006248	654	-1.14445	3.35712	0.0203304290771	sample2_unique	6.89187	15.23529
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-chr22	37669123	37669950	487	-3.23735	1.91645	0.00079345703125	sample2_unique	1.22925	11.59254
-chr22	37881936	37883129	653	-0.94738	3.13339	0.0354080200195	sample2_unique	6.31902	12.18539
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-chr22	38859005	38860072	369	-1.2554	3.30735	0.0129375457764	sample2_unique	6.407	15.29566
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-chr22	39361810	39362830	526	-1.72557	2.66096	0.00694274902344	sample2_unique	3.4778	11.50146
-chr22	39377564	39379373	1080	-3.09925	3.62869	4.15593603975e-08	sample2_unique	4.22533	36.20997
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-chr22	39688296	39689489	636	-3.90318	2.29248	9.53674316406e-06	sample2_unique	1.26654	18.94927
-chr22	39695867	39697196	848	-2.51133	3.10473	0.000188499689102	sample2_unique	3.60267	20.54044
-chr22	39848350	39849523	770	-3.63797	2.1427	6.48498535156e-05	sample2_unique	1.25155	15.58067
-chr22	39860944	39861915	342	-5.13189	1.19616	0.000228881835938	sample2_unique	0.38695	13.56771
-chr22	39867379	39871193	1981	-4.31438	3.35712	2.00373051484e-12	sample2_unique	2.29729	45.70595
-chr22	39884240	39886662	1912	-2.47633	3.08496	0.000316679477692	sample2_unique	3.597	20.0166
-chr22	39924606	39926121	545	-1.82429	3.37744	0.00171534717083	sample2_unique	5.5224	19.55662
-chr22	39952902	39953738	645	0.30443	3.43518	0.0770862102509	sample2_unique	12.02025	9.73354
-chr22	40119263	40121008	987	-3.94693	3.1496	2.42289388552e-09	sample2_unique	2.25971	34.84947
-chr22	40169764	40170759	377	-2.42107	2.58496	0.00259399414062	sample2_unique	2.59265	13.88538
-chr22	40228144	40229604	962	-3.75711	2.67878	2.421438694e-06	sample2_unique	1.74137	23.54477
-chr22	40296463	40298579	638	-3.30641	3.08496	1.89058482647e-06	sample2_unique	2.69775	26.68885
-chr22	40298805	40299656	200	-4.55522	2.0	9.53674316406e-06	sample2_unique	0.82496	19.39496
-chr22	40301073	40302393	644	-3.98062	2.33621	5.00679016113e-06	sample2_unique	1.27094	20.06376
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-chr22	40342060	40347165	1878	-5.35149	4.49114	2.6891765316e-38	sample2_unique	3.51956	143.69689
-chr22	40383881	40385414	579	-4.30993	2.5222	1.00582838058e-07	sample2_unique	1.28988	25.58391
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-chr22	40472617	40473933	718	-1.76903	2.87744	0.00583648681641	sample2_unique	3.98043	13.5663
-chr22	40582929	40584106	632	-1.78789	2.69616	0.00694274902344	sample2_unique	3.48755	12.04285
-chr22	40585902	40587289	1201	-2.57193	3.33089	2.21198424697e-05	sample2_unique	4.12652	24.53646
-chr22	40831918	40833075	521	-2.36519	3.0222	0.000872015953064	sample2_unique	3.57912	18.44036
-chr22	40858203	40859813	1181	-3.42596	3.40368	1.53449946083e-08	sample2_unique	3.22813	34.6951
-chr22	41017040	41018298	340	-4.66968	2.06464	2.62260437012e-06	sample2_unique	0.8292	21.10452
-chr22	41047034	41049149	967	-4.20012	4.25042	1.37231525445e-20	sample2_unique	4.43939	81.59902
-chr22	41050441	41051171	570	-3.30286	1.95345	0.00079345703125	sample2_unique	1.23287	12.16682
-chr22	41361658	41362561	200	-3.53574	2.08496	0.000228881835938	sample2_unique	1.24582	14.44832
-chr22	41762792	41764301	342	-4.25052	2.48864	3.72529029846e-07	sample2_unique	1.28644	24.48625
-chr22	41799567	41800356	334	-2.36671	2.55426	0.0042724609375	sample2_unique	2.58633	13.33934
-chr22	41919275	41920354	570	-3.68618	2.16993	6.48498535156e-05	sample2_unique	1.25426	16.14505
-chr22	41935587	41937156	753	-3.94249	2.31468	5.00679016113e-06	sample2_unique	1.26877	19.50707
-chr22	41958998	41959963	643	-1.87479	2.52764	0.0111083984375	sample2_unique	3.011	11.04281
-chr22	41989968	41990868	431	-2.71427	2.45345	0.00091552734375	sample2_unique	2.13808	14.03138
-chr22	42062546	42064172	562	-1.92315	4.26569	1.8396188576e-05	sample2_unique	9.87729	37.45964
-chr22	42093074	42093915	331	-0.94481	3.01118	0.0472106933594	sample2_unique	5.81095	11.18571
-chr22	42795515	42796250	491	-1.90318	2.29248	0.02685546875	sample2_unique	2.53308	9.47463
-chr22	42808411	42809435	441	-0.8793	2.97418	0.0472106933594	sample2_unique	5.79388	10.65774
-chr22	42932950	42934154	475	-3.04119	2.93518	3.42726707458e-05	sample2_unique	2.66583	21.94431
-chr22	42934841	42935840	556	-3.53574	2.08496	0.000228881835938	sample2_unique	1.24582	14.44832
-chr22	43042123	43043402	571	-2.13648	3.08496	0.000872015953064	sample2_unique	4.04663	17.79253
-chr22	43084056	43084935	287	-0.91116	2.56464	0.0604248046875	sample2_unique	4.3141	8.11291
-chr22	43353550	43356918	2058	-6.42197	3.05426	1.29040175558e-22	sample2_unique	0.89706	76.91777
-chr22	43402941	43404589	1069	-2.54062	2.90368	0.000317096710205	sample2_unique	3.10237	18.05079
-chr22	43499641	43500697	818	-3.73263	2.19616	3.43322753906e-05	sample2_unique	1.25688	16.70809
-chr22	43659226	43660901	1034	-3.42905	2.85712	2.421438694e-06	sample2_unique	2.20778	23.77948
-chr22	43689186	43689878	479	-2.48139	2.32193	0.00277709960938	sample2_unique	2.11585	11.81563
-chr22	43716511	43717778	395	-4.08862	2.39721	1.37090682983e-06	sample2_unique	1.27713	21.72855
-chr22	43795186	43796027	316	-1.591	2.58496	0.0174560546875	sample2_unique	3.45685	10.41405
-chr22	44364609	44366494	1490	-4.24346	2.95345	4.58385329694e-09	sample2_unique	1.77981	33.71176
-chr22	44426355	44427763	500	-4.70566	2.08496	1.37090682983e-06	sample2_unique	0.83054	21.67244
-chr22	44442268	44443222	775	-3.94249	2.31468	5.00679016113e-06	sample2_unique	1.26877	19.50707
-chr22	45071889	45074793	1463	-4.3139	4.31468	1.47408946887e-22	sample2_unique	4.46212	88.74722
-chr22	45080448	45081893	1173	-2.57857	3.1427	0.000111386179924	sample2_unique	3.61355	21.58542
-chr22	45611346	45612968	630	-3.44056	2.5	5.00679016113e-05	sample2_unique	1.7168	18.63935
-chr22	45708465	45711741	1906	-5.81794	2.71313	2.22044604925e-14	sample2_unique	0.87306	49.25164
-chr22	45998587	45999600	443	-2.50007	2.88078	0.000317096710205	sample2_unique	3.09673	17.51859
-chr22	46014387	46015177	296	-1.82075	2.24593	0.02685546875	sample2_unique	2.52373	8.91543
-chr22	46034769	46035377	468	-2.12268	2.41645	0.0111083984375	sample2_unique	2.55817	11.14087
-chr22	46462688	46464235	1095	-4.63266	2.04373	2.62260437012e-06	sample2_unique	0.82783	20.53567
-chr22	46480103	46483502	2119	-6.50267	3.09984	4.29099942762e-24	sample2_unique	0.90032	81.63834
-chr22	46589567	46590561	575	-3.53574	2.08496	0.000228881835938	sample2_unique	1.24582	14.44832
-chr22	46630205	46632040	964	-4.82782	2.81468	6.91215973347e-11	sample2_unique	1.32021	37.49406
-chr22	46786198	46787218	556	-2.17318	2.69616	0.00259399414062	sample2_unique	3.05161	13.76326
-chr22	46851230	46852461	777	-3.73263	2.19616	3.43322753906e-05	sample2_unique	1.25688	16.70809
-chr22	46959098	46960261	566	-1.12879	3.45345	0.0146124958992	sample2_unique	7.40785	16.19914
-chr22	46999309	47001409	653	-3.67385	3.29248	1.53449946083e-08	sample2_unique	2.74262	35.00296
-chr22	47044982	47046222	699	-3.31482	2.42899	0.000163078308105	sample2_unique	1.70714	16.98748
-chr22	47047805	47048545	152	-2.41588	2.28493	0.0047607421875	sample2_unique	2.10963	11.25793
-chr22	47149605	47151076	715	-2.67322	3.19616	6.5378844738e-05	sample2_unique	3.62894	23.14727
-chr22	47330272	47332573	1362	-4.26457	2.96537	4.58385329694e-09	sample2_unique	1.78149	34.24105
-chr22	47732688	47733415	541	-3.82033	1.58496	0.00146484375	sample2_unique	0.79818	11.27554
-chr22	48026267	48029425	1483	-6.48735	3.75191	9.4774232035e-38	sample2_unique	1.42231	127.60889
-chr22	49447787	49448819	651	-1.59848	2.78112	0.0138854980469	sample2_unique	3.95007	11.96178
-chr22	49764635	49765621	465	-5.74732	1.54373	2.62260437012e-06	sample2_unique	0.39779	21.36815
-chr22	50048953	50052069	1968	-4.68868	4.11681	2.45337003701e-23	sample2_unique	3.41638	88.10488
-chr22	50097692	50098812	398	-3.58788	2.11441	0.0001220703125	sample2_unique	1.24874	15.01518
-chr22	50179678	50180601	294	-4.01722	1.69616	0.00042724609375	sample2_unique	0.80527	13.03908
-chr22	50200909	50202776	1122	-4.80832	2.80367	6.91215973347e-11	sample2_unique	1.31906	36.95839
-chr22	50328011	50328960	555	-1.33519	2.95943	0.0236053466797	sample2_unique	4.89679	12.35502
-chr22	50523560	50524565	327	-2.17318	2.69616	0.00259399414062	sample2_unique	3.05161	13.76326
-chr22	50543552	50544765	680	-2.99928	2.61441	0.000163078308105	sample2_unique	2.1656	17.31619
-chr22	50555334	50558338	634	-3.45685	3.16993	3.17580997944e-07	sample2_unique	2.71604	29.82303
-chr22	50606763	50608437	293	-1.16075	3.2539	0.018482208252	sample2_unique	6.37986	14.26369
-chr22	50679295	50680533	605	-3.44056	2.5	5.00679016113e-05	sample2_unique	1.7168	18.63935
-chr22	50707546	50708451	727	-1.16264	3.9915	0.00607143592788	sample2_unique	10.63081	23.79885
-chr22	50752385	50753651	824	-2.50007	2.88078	0.000317096710205	sample2_unique	3.09673	17.51859
-chr22	50756814	50758035	795	-4.29001	1.85022	6.48498535156e-05	sample2_unique	0.81519	15.94713
-chr22	50768593	50770366	746	-4.69318	3.57105	2.05022630817e-16	sample2_unique	2.33668	60.44872
-chr22	50936245	50937827	1085	-3.40584	3.39232	2.82670953311e-08	sample2_unique	3.22523	34.18378
-chr22	50977507	50978750	386	-3.86263	2.26958	1.81198120117e-05	sample2_unique	1.26424	18.39058
-chr22	51051823	51052907	310	-2.57151	2.66993	0.000924110412598	sample2_unique	2.61023	15.516
-chr22	51059873	51061094	486	-1.86169	3.529	0.000701732933521	sample2_unique	6.05512	22.0063
-chr22	51180653	51181336	514	-3.09528	1.83621	0.002685546875	sample2_unique	1.22143	10.43855